Clone Sequence Records
BO10095.3prime Sequence
925 bp (802 high quality bases) assembled on 2006-04-19
> BO10095.3prime
ATGGTCTAGAAAGCTTGCACCGGCTTTCGAAGCTTCGACAGCAGGACTCC
ACTGGGGATAATCGATCTGGGTGGCTGCCTCATATTCCTGCACCAAGCAG
TCAACCGTGTCCCGTGCGATGTCCAGTTCGGTCAGGTCGTCCTGGAACAT
GGATTCGCGGCGAAAGTTGTCGAGGAAGGCGTTGCGCTTCCTCAGCTTAT
CGTACTGGGCCAAGGCCCTCTTGAAGAGCGAACTGATACCCGTGTGATTG
GCCATCATCAATCCGGATACCTTGTGGGCCGACTGCACATAGGGCGAGCT
GCGCGGCAGAGCCACTTGGATGCTGGCCGGACCCCATGGTATGAAGTTGG
CCAGCTTTCGCTCGCGGATGCGCTGCAGCGACTTGTGCACCTGGGATGGA
TCCACCTCGCCCTGGATGATGTTCAGTATGGAGACGAAGCACTGGCGGCT
CTGCTTGTCCGTCAGCGCGGAAACCATCATGTTCTTCGGCTGCAGAAGGC
GACGCATTACATCCAAAACGGTGGTCTTTCGAACGCTTGTCTTGGTCTCG
CAGTCGGACATTAGCGGAGTATATCCCGTCATCAGGAAGTGCAGCTGGGG
CGTGGGAATGAGCGAGGCGGTCAGACCGATGAGGTTGTTGTTCATGTACG
AGGGATATCGCAGGGTGGTGGTGCTCAGACTCATGATGGTGGACACCAGA
TTGTTGATCTGCGTAAAAGTGGGCGTTTGGATGTGCAATCTTTCGGTGGC
GATGCGGTTCAGTGCGGTATTATCCAGCACCACCACACTGTCCGCGCACT
TGGTCAAACGCTTCAGGGTAAGGATCGAGTTATATGGCTGCACAACCACG
TCGCTGATCTCGTCCTGATTGGGAAAACGCTGTACGTCTGTATGAGCTTC
TTGGGAAGCGTTCGGACAGCGTTCC
BO10095.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17566-PA | 1374 | gammaTub37C-RA | 513..1371 | 877..19 | 4295 | 100 | Minus |
| CG17566-PA | 1374 | gammaTub37C-RA | 482..515 | 907..874 | 170 | 100 | Minus |
| CG3157-PA | 1428 | gammaTub23C-RA | 514..587 | 876..803 | 145 | 87.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:11:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1628 | CG17566-RB | 536..1445 | 925..19 | 4475 | 99.7 | Minus |
| gammaTub37C-RA | 1521 | CG17566-RA | 536..1445 | 925..19 | 4475 | 99.7 | Minus |
| gammaTub23C-RA | 1850 | CG3157-RA | 651..1499 | 906..71 | 960 | 75.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:10:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19184046..19184575 | 19..548 | 2650 | 100 | Plus |
| 2L | 23513712 | 2L | 19184633..19185008 | 547..920 | 1780 | 99.5 | Plus |
| 2L | 23513712 | 2L | 2973690..2974507 | 876..71 | 875 | 74.1 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:10:59 has no hits.
BO10095.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:02 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17566-PA | 462..1374 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:32 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17566-PA | 462..1374 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:33:36 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 536..1448 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:57:49 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 536..1448 | 15..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:57:49 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19184043..19184573 | 15..546 | 99 | <- | Plus |
| 2L | 19184633..19185014 | 547..925 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:33:36 Download gff for
BO10095.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19184043..19184573 | 15..546 | 99 | <- | Plus |
| arm_2L | 19184633..19185014 | 547..925 | 99 | | Plus |
BO10095.5prime Sequence
912 bp (826 high quality bases) assembled on 2006-04-19
> BO10095.5prime
GAAGTTATCAGTCGACATGCCCAGCGAGATTATAACCCTTCAATTGGGCC
AATGTGGCAATCAAATTGGTTTCGAGTTCTGGAAGAGATTGTGCCTGGAG
CACGGCATCTCCCCGGATGGCGTCCTGGAAGACTTCGCCACCGATGGACA
GGATCGCAAGGATGTGTTCTTTTACCAGGCGGACGACAACCATTACATAC
CGCGGGCCGTTCTCATAGACTTAGAGCCCAGAGTCATTAACAACATCATG
ACCTCTCCGTACTCCAAGTTGTACAACCAGGAGAATGTGTTCCTCTCCAA
GCACGGCGGTGGAGCAGGAAACAACTGGGCGTCCGGCTTTAGCCAGGGTG
AGAAGGTGCAGGAGGAGGTGTTCGACATTCTGGACCGCGAGGCCGATGGC
AGCGATTCGCTGGAGGGATTCGTGCTCTGCCACTCGATAGCCGGCGGAAC
TGGGTCCGGAATGGGCTCATATGTCCTGGAACGGCTGTCCGAACGCTTTC
CCAAGAAGCTCATACAGACGTACAGCGTTTTTCCCAATCAGGACGAGATC
AGCGACGTGGTTGTGCAGCCATATAACTCGATCCTTACCCTGAAGCGTTT
GACCAAGTGCGCGGACAGTGTGGTGGTGCTGGATAATACCGCACTGAACC
GCATCGCCACCGAAAGATTGCACATCCAAACGCCCACTTTTACGCAGATC
AACAATCTGGTGTCCACCATCATGAGTCTGAGCACCACCACCCTGCGATA
TCCCTCGTACATGAACAACAACCTCATCGGTCTGACCGCCTCGCTCATTC
CCACGCCCCAGCTGCACTTCCTGATGACGGGATATACTCCGCTAATGTCC
GACTGCGAGACCAAGACAAGCGTTCGAAAGACCACCGTTTTGGATGTAAT
GCGTCGCCTTCT
BO10095.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17566-PA | 1374 | gammaTub37C-RA | 1..896 | 17..912 | 4480 | 100 | Plus |
| CG3157-PA | 1428 | gammaTub23C-RA | 40..98 | 56..114 | 195 | 93.2 | Plus |
| CG3157-PA | 1428 | gammaTub23C-RA | 139..185 | 155..201 | 160 | 93.6 | Plus |
| CG3157-PA | 1428 | gammaTub23C-RA | 514..587 | 530..603 | 145 | 87.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1628 | CG17566-RB | 75..970 | 17..912 | 4480 | 100 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 75..970 | 17..912 | 4480 | 100 | Plus |
| gammaTub23C-RA | 1850 | CG3157-RA | 197..995 | 44..843 | 1485 | 79.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19184633..19185225 | 859..267 | 2965 | 100 | Minus |
| 2L | 23513712 | 2L | 2973432..2974003 | 272..843 | 1045 | 78.8 | Plus |
| 2L | 23513712 | 2L | 19185332..19185534 | 268..66 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 2973166..2973350 | 66..250 | 400 | 81.1 | Plus |
| 2L | 23513712 | 2L | 19184521..19184575 | 912..858 | 275 | 100 | Minus |
| 2L | 23513712 | 2L | 19185604..19185652 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:22:23 has no hits.
BO10095.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:03 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17566-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:35 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17566-PA | 1..896 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:37:35 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 69..970 | 10..912 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:06 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 69..970 | 10..912 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:06 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19184521..19184573 | 860..912 | 100 | <- | Minus |
| 2L | 19184633..19185223 | 269..859 | 100 | <- | Minus |
| 2L | 19185332..19185534 | 66..268 | 100 | <- | Minus |
| 2L | 19185604..19185658 | 10..65 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:37:35 Download gff for
BO10095.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19184521..19184573 | 860..912 | 100 | <- | Minus |
| arm_2L | 19184633..19185223 | 269..859 | 100 | <- | Minus |
| arm_2L | 19185332..19185534 | 66..268 | 100 | <- | Minus |
| arm_2L | 19185604..19185658 | 10..65 | 94 | | Minus |
BO10095.complete Sequence
1405 bp (1405 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631646
> BO10095.complete
GAAGTTATCAGTCGACATGCCCAGCGAGATTATAACCCTTCAATTGGGCC
AATGTGGCAATCAAATTGGTTTCGAGTTCTGGAAGAGATTGTGCCTGGAG
CACGGCATCTCCCCGGATGGCGTCCTGGAAGACTTCGCCACCGATGGACA
GGATCGCAAGGATGTGTTCTTTTACCAGGCGGACGACAACCATTACATAC
CGCGGGCCGTTCTCATAGACTTAGAGCCCAGAGTCATTAACAACATCATG
ACCTCTCCGTACTCCAAGTTGTACAACCAGGAGAATGTGTTCCTCTCCAA
GCACGGCGGTGGAGCAGGAAACAACTGGGCGTCCGGCTTTAGCCAGGGTG
AGAAGGTGCAGGAGGAGGTGTTCGACATTCTGGACCGCGAGGCCGATGGC
AGCGATTCGCTGGAGGGATTCGTGCTCTGCCACTCGATAGCCGGCGGAAC
TGGGTCCGGAATGGGCTCATATGTCCTGGAACGGCTGTCCGAACGCTTTC
CCAAGAAGCTCATACAGACGTACAGCGTTTTTCCCAATCAGGACGAGATC
AGCGACGTGGTTGTGCAGCCATATAACTCGATCCTTACCCTGAAGCGTTT
GACCAAGTGCGCGGACAGTGTGGTGGTGCTGGATAATACCGCACTGAACC
GCATCGCCACCGAAAGATTGCACATCCAAACGCCCACTTTTACGCAGATC
AACAATCTGGTGTCCACCATCATGAGTCTGAGCACCACCACCCTGCGATA
TCCCTCGTACATGAACAACAACCTCATCGGTCTGACCGCCTCGCTCATTC
CCACGCCCCAGCTGCACTTCCTGATGACGGGATATACTCCGCTAATGTCC
GACTGCGAGACCAAGACAAGCGTTCGAAAGACCACCGTTTTGGATGTAAT
GCGTCGCCTTCTGCAGCCGAAGAACATGATGGTTTCCGCGCTGACGGACA
AGCAGAGCCGCCAGTGCTTCGTCTCCATACTGAACATCATCCAGGGCGAG
GTGGATCCATCCCAGGTGCACAAGTCGCTGCAGCGCATCCGCGAGCGAAA
GCTGGCCAACTTCATACCATGGGGTCCGGCCAGCATCCAAGTGGCTCTGC
CGCGCAGCTCGCCCTATGTGCAGTCGGCCCACAAGGTATCCGGATTGATG
ATGGCCAATCACACGGGTATCAGTTCGCTCTTCAAGAGGGCCTTGGCCCA
GTACGATAAGCTGAGGAAGCGCAACGCCTTCCTCGACAACTTTCGCCGCG
AATCCATGTTCCAGGACGACCTGACCGAACTGGACATCGCACGGGACACG
GTTGACTGCTTGGTGCAGGAATATGAGGCAGCCACCCAGATCGATTATCC
CCAGTGGAGTCCTGCTGTCGAAGCTTCGAAAGCCGGTGCAAGCTTTCTAG
ACCAT
BO10095.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:39:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1374 | CG17566-PB | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| gammaTub37C-RA | 1374 | CG17566-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
| gammaTub23C-RA | 1428 | CG3157-PA | 40..1331 | 56..1335 | 1775 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-RB | 1628 | CG17566-RB | 75..1445 | 17..1387 | 6855 | 100 | Plus |
| gammaTub37C-RA | 1521 | CG17566-RA | 75..1445 | 17..1387 | 6855 | 100 | Plus |
| gammaTub23C-RA | 1850 | CG3157-RA | 208..1499 | 56..1335 | 1775 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:39:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19184633..19185225 | 859..267 | 2965 | 100 | Minus |
| 2L | 23513712 | 2L | 19184046..19184575 | 1387..858 | 2650 | 100 | Minus |
| 2L | 23513712 | 2L | 2973432..2974507 | 272..1335 | 1340 | 75.2 | Plus |
| 2L | 23513712 | 2L | 19185332..19185534 | 268..66 | 1015 | 100 | Minus |
| 2L | 23513712 | 2L | 2973166..2973350 | 66..250 | 400 | 81.1 | Plus |
| 2L | 23513712 | 2L | 19185604..19185652 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:39:28 has no hits.
BO10095.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:38 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 1..1374 | 17..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:25 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 52..1431 | 10..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:41:11 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 75..1445 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:38 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 52..1431 | 10..1391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:48 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gammaTub37C-RA | 75..1445 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:48 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19184044..19184573 | 860..1389 | 99 | <- | Minus |
| 2L | 19184633..19185223 | 269..859 | 100 | <- | Minus |
| 2L | 19185332..19185534 | 66..268 | 100 | <- | Minus |
| 2L | 19185604..19185652 | 17..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:41:11 Download gff for
BO10095.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19184044..19184573 | 860..1389 | 99 | <- | Minus |
| arm_2L | 19184633..19185223 | 269..859 | 100 | <- | Minus |
| arm_2L | 19185332..19185534 | 66..268 | 100 | <- | Minus |
| arm_2L | 19185604..19185652 | 17..65 | 100 | | Minus |
BO10095.pep Sequence
Translation from 16 to 1405
> BO10095.pep
MPSEIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFATDGQDRKDV
FFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGA
GNNWASGFSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMG
SYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILTLKRLTKCAD
SVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMSLSTTTLRYPSYMN
NNLIGLTASLIPTPQLHFLMTGYTPLMSDCETKTSVRKTTVLDVMRRLLQ
PKNMMVSALTDKQSRQCFVSILNIIQGEVDPSQVHKSLQRIRERKLANFI
PWGPASIQVALPRSSPYVQSAHKVSGLMMANHTGISSLFKRALAQYDKLR
KRNAFLDNFRRESMFQDDLTELDIARDTVDCLVQEYEAATQIDYPQWSPA
VEASKAGASFLDH
BO10095.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gammaTub37C-PB | 457 | CG17566-PB | 1..457 | 1..457 | 2361 | 100 | Plus |
| gammaTub37C-PA | 457 | CG17566-PA | 1..457 | 1..457 | 2361 | 100 | Plus |
| gammaTub23C-PA | 475 | CG3157-PA | 1..452 | 1..448 | 1964 | 83.2 | Plus |
| betaTub97EF-PC | 457 | CG4869-PC | 3..432 | 4..443 | 732 | 34.9 | Plus |
| betaTub97EF-PB | 457 | CG4869-PB | 3..432 | 4..443 | 731 | 34.5 | Plus |
