Clone Sequence Records
BO10104.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-04-19
> BO10104.3prime
ATGGTCTAGAAAGCTTGCGATATGCTTCTGTGCAGTTGCTCTGCCTCTTG
GGGTGGTACATTGGAACTTTGCCGGGGGGCAGGAGCCCGCGCCCACGCAA
ACAGCCTTGACATTTGGTTTCGTATTCCTCAACTGCAATCTGCACTGCAG
CGCCAACTTTCGGGATGATGAAAGTTTCGAAGCCGAATGAAATTCCAATA
GGAGCGCTTCGTCTCTTTCGCGTGAGTCAACAAGGCTGAGTGCGAGCGAG
AGGGGGTAGCGGGCAGGATGCAGCTGCCGAGTCAGGCGGATAGAAACGTT
AATGTTTTGCTGCGACGCAATTTCGGCAACGGCGGAAGAAGAATGTTGTT
TGGTTTTCCCAATTTTCCCCTTTGTTTTCTTGCTTTTACCCCGCACCGCG
CGCGAACACACACACATGTCGACTGATAACT
BO10104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31535-PA | 402 | CG31535-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 01:14:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951670..4952068 | 19..417 | 1995 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 01:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 389..346 | 109 | 75 | Minus |
BO10104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:08 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:42 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 16..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 13..427 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 13..427 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:55 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 13..427 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:55 Download gff for
BO10104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 13..427 | 98 | | Plus |
BO10104.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-04-19
> BO10104.5prime
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCGCAAGCTTTCTAGACC
BO10104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31535-PA | 402 | CG31535-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 22:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:42:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951670..4952068 | 415..17 | 1995 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:42:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 45..88 | 109 | 75 | Plus |
BO10104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:09 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:44 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31535-PA | 1..402 | 17..418 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:41 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 7..421 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:41 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951663..4952074 | 7..421 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:31 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 7..421 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:31 Download gff for
BO10104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777385..777796 | 7..421 | 98 | | Minus |
BO10104.complete Sequence
433 bp (433 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631647
> BO10104.complete
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCGCAAGCTTTCTAGACCAT
BO10104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:53:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:53:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4951670..4952068 | 415..17 | 1995 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 14:53:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 5081..5123 | 45..88 | 109 | 75 | Plus |
BO10104.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:02:35 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:02:36 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:52 Download gff for
BO10104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951666..4952068 | 17..417 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:52 Download gff for
BO10104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4951666..4952068 | 17..417 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:21 Download gff for
BO10104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777388..777790 | 17..417 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:21 Download gff for
BO10104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 777388..777790 | 17..417 | 99 | | Minus |
BO10104.pep Sequence
Translation from 16 to 433
> BO10104.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHIASFLDH
Sequence BO10104.pep has no blast hits.