Clone BO10104 Report

Search the DGRC for BO10104

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:4
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO10104.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO10104.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-04-19

> BO10104.3prime
ATGGTCTAGAAAGCTTGCGATATGCTTCTGTGCAGTTGCTCTGCCTCTTG
GGGTGGTACATTGGAACTTTGCCGGGGGGCAGGAGCCCGCGCCCACGCAA
ACAGCCTTGACATTTGGTTTCGTATTCCTCAACTGCAATCTGCACTGCAG
CGCCAACTTTCGGGATGATGAAAGTTTCGAAGCCGAATGAAATTCCAATA
GGAGCGCTTCGTCTCTTTCGCGTGAGTCAACAAGGCTGAGTGCGAGCGAG
AGGGGGTAGCGGGCAGGATGCAGCTGCCGAGTCAGGCGGATAGAAACGTT
AATGTTTTGCTGCGACGCAATTTCGGCAACGGCGGAAGAAGAATGTTGTT
TGGTTTTCCCAATTTTCCCCTTTGTTTTCTTGCTTTTACCCCGCACCGCG
CGCGAACACACACACATGTCGACTGATAACT

BO10104.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31535-PA 402 CG31535-RA 1..399 417..19 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 01:14:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951670..4952068 19..417 1995 100 Plus
Blast to na_te.dros performed 2015-02-11 01:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 389..346 109 75 Minus

BO10104.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:08 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 16..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:42 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 16..417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 13..427 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:32:36 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 13..427 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:55 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 13..427 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:55 Download gff for BO10104.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 13..427 98   Plus

BO10104.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-04-19

> BO10104.5prime
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCGCAAGCTTTCTAGACC

BO10104.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31535-PA 402 CG31535-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 22:42:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951670..4952068 415..17 1995 100 Minus
Blast to na_te.dros performed 2015-02-11 22:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 45..88 109 75 Plus

BO10104.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:09 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:44 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31535-PA 1..402 17..418 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:41 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 7..421 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:41 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4951663..4952074 7..421 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:31 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 7..421 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 07:48:31 Download gff for BO10104.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777385..777796 7..421 98   Minus

BO10104.complete Sequence

433 bp (433 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631647

> BO10104.complete
GAAGTTATCAGTCGACATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAA
GCAAGAAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCC
GCCGTTGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCT
GACTCGGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCC
TTGTTGACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCG
GCTTCGAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCA
GTTGAGGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCT
CCTGCCCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACT
GCACAGAAGCATATCGCAAGCTTTCTAGACCAT

BO10104.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 14:53:05 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 14:53:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4951670..4952068 415..17 1995 100 Minus
Blast to na_te.dros performed 2014-11-27 14:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 5081..5123 45..88 109 75 Plus

BO10104.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 23:02:35 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:02:36 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:52 Download gff for BO10104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4951666..4952068 17..417 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:52 Download gff for BO10104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4951666..4952068 17..417 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:21 Download gff for BO10104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777388..777790 17..417 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:21 Download gff for BO10104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 777388..777790 17..417 99   Minus

BO10104.pep Sequence

Translation from 16 to 433

> BO10104.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHIASFLDH
Sequence BO10104.pep has no blast hits.