Clone BO10110 Report

Search the DGRC for BO10110

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptMnt-RA
Protein status:BO10110.pep: validated full length
Sequenced Size:1780

Clone Sequence Records

BO10110.3prime Sequence

975 bp (817 high quality bases) assembled on 2006-04-19

> BO10110.3prime
ATGGTCTAGAAAGCTTGCCTGTGCCGTTGTCCCTGCACTGAGCCTCAGGA
AAGTGTAATTGCGATCCTTATCGGCCTGATGGAACCCATTCACTGAACCT
CCGCCAGCTGGCACAGCAGCGCCCGCACCGCCATGGAATTTTAGGCCAAC
ACTACGGGCTGTGGCCGTGGGCGTGATTATCTGCTGTTGTTGCGTGGGCG
ACGAAGAACTGGACGACGAACTGGAAGATGATGATGATGAGGAGGATGAG
GACGATGATGAGGAGCCGCCCATAAATGAGGTCGACAACGAGACGCCACT
GGACGAGGAGCTGGGCGACGGCGATGGAGTCGATGGCGTTGGCGAGCCAC
GTGTGATGGTGGCTCCAGTTGTGGCTCCTATTCCCGATGGACTGCCCGCT
GGGCTGCCGTTGTGGTGCTGGTGCAACTGATGATTGTGGCCTCCCGTTGG
TGAGATTGCCAGCATGTTGCCGTTGCTGCCATTGCCATTTTTAATTGTCA
TGATGCCCATGGCCGGAGTCAGTGTGGTTGTTGCACCTCCTGTGTGGTTG
CCATTGTGTTTGCTGCTGGCTGCTGCGGTTGCTCCTCCATTAGTTTTGTT
TATCACAGTTGTTAGCTGCCCAGTGGCACAGGCGTTGCCTGCATCGAATA
GAATTGTGGTTCCATTGTGGCCACTGGCCGCCGTTGGTGGTGCTGTTGTG
GCTGTTGTTGCCAGACAAACTGCTTTGTCGGCCTGTGGAATGATTTGCTG
ATCGGTGGGCGGCGATTCCCTCCTTAAGCTCAGTTGCTTTAGCCGCTTCT
GCAGCTCGATCTTCTGCTTGGCCAGTTTCTCTATCTTCGCCTCCTGCTCG
CAAACTTCATGACTCAAGGAAATGACATATTTGTGGGCCGTGTCAAGTAT
TGTCAAGTTTGATGTTTTCTTTCGGTCCTCGTCACCCATGGGCAGCACCT
TTTTTGAACAGGTCATAGCACTCCT

BO10110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13316-PC 1749 Mnt-RC 811..1746 954..19 4630 99.7 Minus
CG13316-PA 1749 Mnt-RA 811..1746 954..19 4630 99.7 Minus
CG13316-PB 1788 Mnt-RB 1083..1785 721..19 3490 99.8 Minus
CG13316-PB 1788 Mnt-RB 853..1084 954..723 1135 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RK 3734 CG13316-RK 1845..2800 975..19 4715 99.6 Minus
Mnt-RH 3064 CG13316-RH 2067..3022 975..19 4715 99.6 Minus
Mnt-RG 2578 CG13316-RG 1581..2536 975..19 4715 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3699932..3700465 619..86 2670 100 Minus
X 23542271 X 3699339..3699486 870..723 740 100 Minus
X 23542271 X 3699682..3699787 724..619 530 100 Minus
X 23542271 X 3699170..3699271 975..873 450 98.1 Minus
X 23542271 X 3700670..3700738 87..19 330 98.6 Minus
Blast to na_te.dros performed 2015-02-12 13:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2985 712..368 182 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6938 747..512 164 58.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6918 711..523 151 58.4 Minus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 7208..7281 442..516 120 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6769..6923 711..550 117 57.9 Minus
roo 9092 roo DM_ROO 9092bp 1120..1148 711..683 109 86.2 Minus

BO10110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:18 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-PA 791..1749 15..975 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:54 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13316-PA 791..1749 15..975 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:35:31 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RG 1581..2539 15..975 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:07 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RG 1581..2539 15..975 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:07 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3699170..3699273 871..975 97 -> Minus
X 3699339..3699486 723..870 100 -> Minus
X 3699684..3699787 619..722 100 -> Minus
X 3699933..3700464 87..618 100 -> Minus
X 3700671..3700737 20..86 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:35:31 Download gff for BO10110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3593203..3593306 871..975 97 -> Minus
arm_X 3593372..3593519 723..870 100 -> Minus
arm_X 3593717..3593820 619..722 100 -> Minus
arm_X 3593966..3594497 87..618 100 -> Minus
arm_X 3594704..3594770 20..86 98 -> Minus

BO10110.5prime Sequence

905 bp (803 high quality bases) assembled on 2006-04-19

> BO10110.5prime
GAAGTTATCAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCG
AGGCGGCTCAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGC
GGCGGCGGTAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCA
GCAGACGGTGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCA
GCCAGCACAATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACG
CCACCGTTCACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGC
GAGCGCCATTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCA
ACGGTCACAGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCAC
GATTACGAGTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCG
CCCCCACGTCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGC
AACATGCCAACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGT
AACATTGGCGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGC
GGCATCCTCGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGA
GCATTGCCTCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCAT
CACACGGGACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGG
AGCGGGCACCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCC
AGCTGAAGGAGTGCTATGACCTGCTCAAAAAGGTGCTGCCCATGGGTGAC
GAGGACCGAAAGAAACATCAAACTTGACAATACTTGACACGGNCCCACAA
TATGT

BO10110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13316-PC 1749 Mnt-RC 1..849 17..865 4245 100 Plus
CG13316-PA 1749 Mnt-RA 1..849 17..865 4245 100 Plus
CG13316-PB 1788 Mnt-RB 490..891 464..865 2010 100 Plus
CG13316-PC 1749 Mnt-RC 848..877 863..892 150 100 Plus
CG13316-PA 1749 Mnt-RA 848..877 863..892 150 100 Plus
CG13316-PB 1788 Mnt-RB 890..919 863..892 150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 3242 CG13316-RE 563..1452 17..905 4380 99.7 Plus
Mnt-RJ 3335 CG13316-RJ 653..1542 17..905 4380 99.7 Plus
Mnt-RA 2440 CG13316-RA 653..1542 17..905 4380 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3693485..3693932 17..464 2240 100 Plus
X 23542271 X 3698741..3699027 464..750 1435 100 Plus
X 23542271 X 3699113..3699269 750..905 679 96.8 Plus
Blast to na_te.dros performed 2015-02-12 06:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2472 134..235 179 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2650 166..504 164 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2415..2512 134..230 163 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6912 298..531 150 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2982 140..352 148 56 Plus
BS 5142 BS BS 5142bp 2012..2104 140..234 136 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2442 472..562 115 59.8 Plus

BO10110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:19 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-PA 1..890 17..905 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:40:56 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13316-PA 1..890 17..905 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:41:30 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1542 17..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:28:30 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 653..1542 17..905 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:28:30 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3699114..3699269 751..905 98   Plus
X 3698742..3699027 465..750 100 -> Plus
X 3693485..3693932 17..464 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:41:30 Download gff for BO10110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3587518..3587965 17..464 100 -> Plus
arm_X 3592775..3593060 465..750 100 -> Plus
arm_X 3593147..3593302 751..905 98   Plus

BO10110.complete Sequence

1780 bp assembled on 2007-11-01

GenBank Submission: FJ631648

> BO10110.complete
GAAGTTATCAGTCGACATGTCAGGGATCGGGGGCATTGGGGTGCTCCTCG
AGGCGGCTCAATTTCTTGAGCAGCATGAGAAGCTCCCGCAGGCGGGAGGC
GGCGGCGGTAGCGCCCTGGGCGTGGGCGTGGCACTGCCTCAACAGCAGCA
GCAGACGGTGCACTGCAAGAGCAACTCCATTATCAACAACAACAATAGCA
GCCAGCACAATAGAAATAGCAGCAGTAGCAGTAACGGGATTATTGCAACG
CCACCGTTCACGAACGGAAATGGCAACGGTACCGTCGGCGTCGGTAACGC
GAGCGCCATTTTCAACGTTAGCGTCAATGCGAACGGGAACGGTCTGAGCA
ACGGTCACAGCAGTCCGCGCAGTCAATTAGCCGCCGCAGCCACTGCCCAC
GATTACGAGTATAGCGCCGCCGGAGTTGCCAATGGACACAGCGAAGGTCG
CCCCCACGTCTCGGCAGCCAGGGATCAGCAGGACCATCCGCAGCATCAGC
AACATGCCAACCATATGCAGATCCAGCAGCATTACGGCTATATGAGGAGT
AACATTGGCGGCGTGATCTATGGCTTGCACAAGGACTCTGCCGACTCTGC
GGCATCCTCGGCATGTGGAGCGGGAGCGGGAGCAGCAGCGGTGGGCATGA
GCATTGCCTCCTCGGCGCCAGCGGCGGGATCTCAGCTATCGGCGCATCAT
CACACGGGACACGGAGGCCGCAGGCGCACCACCAGTTCCAATAGTAATGG
AGCGGGCACCCGGGAGGTGCACAACAAGCTGGAAAAGGAGCGACGCGCCC
AGCTGAAGGAGTGCTATGACCTGCTCAAAAAGGTGCTGCCCATGGGTGAC
GAGGACCGAAAGAAAACATCAAACTTGACAATACTTGACACGGCCCACAA
ATATGTCAATTCCTTGAGTCATGAAGTTTGCGAGCAGGAGGCGAAGATAG
AGAAACTGGCCAAGCAGAAGATCGAGCTGCAGAAGCGGCTAAAGCAACTG
AGCTTAAGGAGGGAATCGCCGCCCACCGATCAGCAAATCATTCCACAGGC
CGACAAAGCAGTTTGTCTGGCAACAACAGCCACAACAGCACCACCAACGG
CGGCCAGTGGCCACAATGGAACCACAATTCTATTCGATGCAGGCAACGCC
TGTGCCACTGGGCAGCTAACAACTGTGATAAACAAAACTAATGGAGGAGC
AACCGCAGCAGCCAGCAGCAAACACAATGGCAACCACACAGGAGGTGCAA
CAACCACACTGACTCCGGCCATGGGCATCATGACAATTAAAAATGGCAAT
GGCAGCAACGGCAACATGCTGGCAATCTCACCAACGGGAGGCCACAATCA
TCAGTTGCACCAGCACCACAACGGCAGCCCAGCGGGCAGTCCATCGGGAA
TAGGAGCCACAACTGGAGCCACCATCACACGTGGCTCGCCAACGCCATCG
ACTCCATCGCCGTCGCCCAGCTCCTCGTCCAGTGGCGTCTCGTTGTCGAC
CTCATTTATGGGCGGCTCCTCATCATCGTCCTCATCCTCCTCATCATCAT
CATCTTCCAGTTCGTCGTCCAGTTCTTCGTCGCCCACGCAACAACAGCAG
ATAATCACGCCCACGGCCACAGCCCGTAGTGTTGGCCTAAAATTCCATGG
CGGTGCGGGCGCTGCTGTGCCAGCTGGCGGAGGTTCAGTGAATGGGTTCC
ATCAGGCCGATAAGGATCGCAATTACACTTTCCTGAGGCTCAGTGCAGGG
ACAACGGCACAGGCAAGCTTTCTAGACCAT

BO10110.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 1749 CG13316-PE 1..1746 17..1762 8715 99.9 Plus
Mnt-RA 1749 CG13316-PA 1..1746 17..1762 8715 99.9 Plus
Mnt-RC 1749 CG13316-PC 1..1746 17..1762 8715 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-RE 3242 CG13316-RE 563..2308 17..1762 8715 99.9 Plus
Mnt-RA 2440 CG13316-RA 653..2398 17..1762 8715 99.9 Plus
Mnt-RC 2581 CG13316-RC 794..2539 17..1762 8715 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3699932..3700465 1162..1695 2670 100 Plus
X 23542271 X 3693485..3693932 17..464 2240 100 Plus
X 23542271 X 3698741..3699027 464..750 1435 100 Plus
X 23542271 X 3699113..3699273 750..910 805 100 Plus
X 23542271 X 3699339..3699486 911..1058 740 100 Plus
X 23542271 X 3699682..3699787 1057..1162 530 100 Plus
X 23542271 X 3700670..3700738 1694..1762 330 98.6 Plus
Blast to na_te.dros performed 2014-11-27 13:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2617..2985 1069..1413 182 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2370..2472 134..235 179 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2650 166..504 164 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2415..2512 134..230 163 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6698..6912 298..531 150 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..2982 140..352 148 56 Plus
BS 5142 BS BS 5142bp 2012..2104 140..234 136 63.2 Plus
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 7208..7281 1339..1265 120 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2351..2442 472..562 115 59.8 Plus

BO10110.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:00 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 1..1749 17..1766 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:24 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 651..2399 17..1766 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:05:59 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RC 794..2539 17..1764 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:13 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RA 651..2396 17..1764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:02 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
Mnt-RC 794..2539 17..1764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:02 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
X 3693485..3693932 17..464 100 -> Plus
X 3698742..3699027 465..750 100 -> Plus
X 3699114..3699273 751..910 100 -> Plus
X 3699339..3699486 911..1058 100 -> Plus
X 3699684..3699787 1059..1162 100 -> Plus
X 3699933..3700464 1163..1694 100 -> Plus
X 3700671..3700738 1695..1764 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:05:59 Download gff for BO10110.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3593147..3593306 751..910 100 -> Plus
arm_X 3593372..3593519 911..1058 100 -> Plus
arm_X 3593717..3593820 1059..1162 100 -> Plus
arm_X 3587518..3587965 17..464 100 -> Plus
arm_X 3592775..3593060 465..750 100 -> Plus
arm_X 3593966..3594497 1163..1694 100 -> Plus
arm_X 3594704..3594771 1695..1764 95   Plus

BO10110.pep Sequence

Translation from 16 to 1780

> BO10110.pep
MSGIGGIGVLLEAAQFLEQHEKLPQAGGGGGSALGVGVALPQQQQQTVHC
KSNSIINNNNSSQHNRNSSSSSNGIIATPPFTNGNGNGTVGVGNASAIFN
VSVNANGNGLSNGHSSPRSQLAAAATAHDYEYSAAGVANGHSEGRPHVSA
ARDQQDHPQHQQHANHMQIQQHYGYMRSNIGGVIYGLHKDSADSAASSAC
GAGAGAAAVGMSIASSAPAAGSQLSAHHHTGHGGRRRTTSSNSNGAGTRE
VHNKLEKERRAQLKECYDLLKKVLPMGDEDRKKTSNLTILDTAHKYVNSL
SHEVCEQEAKIEKLAKQKIELQKRLKQLSLRRESPPTDQQIIPQADKAVC
LATTATTAPPTAASGHNGTTILFDAGNACATGQLTTVINKTNGGATAAAS
SKHNGNHTGGATTTLTPAMGIMTIKNGNGSNGNMLAISPTGGHNHQLHQH
HNGSPAGSPSGIGATTGATITRGSPTPSTPSPSPSSSSSGVSLSTSFMGG
SSSSSSSSSSSSSSSSSSSSSSPTQQQQIITPTATARSVGLKFHGGAGAA
VPAGGGSVNGFHQADKDRNYTFLRLSAGTTAQASFLDH

BO10110.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Mnt-PE 582 CG13316-PE 1..582 1..582 2993 100 Plus
Mnt-PA 582 CG13316-PA 1..582 1..582 2993 100 Plus
Mnt-PC 582 CG13316-PC 1..582 1..582 2993 100 Plus
Mnt-PJ 583 CG13316-PJ 1..583 1..582 2981 99.8 Plus
Mnt-PG 581 CG13316-PG 1..581 1..582 2977 99.8 Plus