Clone Sequence Records
BO10115.3prime Sequence
953 bp (869 high quality bases) assembled on 2006-04-19
> BO10115.3prime
ATGGTCTAGAAAGCTTGCAGAGGAGCGCTGTTCACCCACCAGGGCATAAA
GGGCGTGCTTGTAGTGGCCCGAAGTATCGCCCTTGATCCAGCTCTTGAGG
GACTTGCCGTACAGACGTTCGAACGCTACCTTAATGTCCGTCATATCAAT
CTCGCTGCGCGTGATGATCACACGGATCAACTGGGTGTCATTGGTGCCAA
TTCCGGCCATCGCCTTGTGCAGGCGCGAAGCGAAGTATTCGGCCTTGTTG
GTGACGCACCTGTAGATGGCAATCAGGCCCTCCATCACATCGCCGGAGAA
CTCCTTCTTGATCGCCTTCTCCAGCGAGTGGCCAGTCATGCCCTCGTACT
CTTGGAATATCAGTTTCAATTGCTGATAGTTCCTCTGGCAGAGGATCATG
TTGAACATGCTCTCATCGGTGCCGACGCGCAGTTCGCCGGCTTTCAGTAG
CTCCCTAGCATCGTTCTTGGCCGCCACGGGATCCACGCGACCACTCTCAT
CCCGCGCCGCCGTGCACAAGGAGGTGAGCAGCCGCTTAAAGTTGCCCGAC
GTCTCCGACTTTAGTTCAGACTCCAAATGGGCGCCGTACAATCGTAAGTA
CTGGTTTTTGATCGTATTGATCTCCATGTTGGACAGCGTGCAGAGGATCT
CGATGAGGACCTCCTCGTCGGTGCCCAGGCCAGCCATGGCATCGTTTAGC
TCGGCGCAGTAGTAGTCCACGATGGGACGCAGCAGGCCGACGAGGAGTTT
CTCAAAGTTGCCGCTCGTCTCCGACTTGATGTCCTCGATGAGGTCCTTGC
CGAAGTGCGTCTTGAACTGGCGCTGGATCTCCTGGCGCTGCTCGTTGGAT
CGCCGACAGATGATGTTAATCAGAGCGTCCTCATCTGTTCCAAAGCCCTT
CATGGGCTTTGCGCAGTCGTGAGCATCCTTGACGGCATCGAAGTTTGCGG
CAG
BO10115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9968-PA | 969 | Anxb11-RA | 80..966 | 905..19 | 4410 | 99.8 | Minus |
CG9968-PB | 1536 | Anxb11-RB | 647..1533 | 905..19 | 4410 | 99.8 | Minus |
CG9968-PA | 969 | Anxb11-RA | 32..70 | 953..915 | 195 | 100 | Minus |
CG9968-PB | 1536 | Anxb11-RB | 599..637 | 953..915 | 195 | 100 | Minus |
CG5730-PD | 975 | AnnIX-RD | 325..375 | 678..628 | 180 | 94.1 | Minus |
CG5730-PA | 975 | AnnIX-RA | 325..375 | 678..628 | 180 | 94.1 | Minus |
CG5730-PB | 975 | AnnIX-RB | 325..375 | 678..628 | 180 | 94.1 | Minus |
CG5730-PC | 975 | AnnIX-RC | 325..375 | 678..628 | 180 | 94.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:13:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB11-RG | 2927 | CG9968-RG | 1118..2052 | 953..19 | 4600 | 99.6 | Minus |
AnxB11-RF | 1375 | CG9968-RF | 111..1045 | 953..19 | 4600 | 99.6 | Minus |
AnxB11-RE | 2485 | CG9968-RE | 676..1610 | 953..19 | 4600 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:12:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16418668..16419030 | 591..953 | 1725 | 98.3 | Plus |
X | 23542271 | X | 16418356..16418589 | 357..590 | 1140 | 99.1 | Plus |
X | 23542271 | X | 16418081..16418291 | 151..361 | 1055 | 100 | Plus |
X | 23542271 | X | 16417955..16418026 | 81..152 | 360 | 100 | Plus |
X | 23542271 | X | 16417833..16417897 | 19..83 | 325 | 100 | Plus |
3R | 32079331 | 3R | 21068339..21068413 | 702..628 | 225 | 86.7 | Minus |
Blast to na_te.dros performed 2015-02-03 15:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6376..6439 | 796..857 | 126 | 68.8 | Plus |
BO10115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:29 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9968-PB | 599..1536 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:08 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9968-PB | 599..1536 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:36 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RE | 676..1614 | 14..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:25 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RE | 676..1614 | 14..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:25 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16417829..16417895 | 14..81 | 97 | <- | Plus |
X | 16417956..16418024 | 82..150 | 100 | <- | Plus |
X | 16418081..16418290 | 151..360 | 100 | <- | Plus |
X | 16418360..16418589 | 361..590 | 99 | <- | Plus |
X | 16418668..16419030 | 591..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:36 Download gff for
BO10115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16312701..16313063 | 591..953 | 99 | | Plus |
arm_X | 16311862..16311928 | 14..81 | 97 | <- | Plus |
arm_X | 16311989..16312057 | 82..150 | 100 | <- | Plus |
arm_X | 16312114..16312323 | 151..360 | 100 | <- | Plus |
arm_X | 16312393..16312622 | 361..590 | 99 | <- | Plus |
BO10115.5prime Sequence
867 bp (816 high quality bases) assembled on 2006-04-19
> BO10115.5prime
GAAGTTATCAGTCGTCATGTATCCCTTCGGAACTCCCACGGTGGTGCCTG
CCGCAAACTTCGATGCCGTCAAGGATGCTCACGACTTGCGCAAGGCCATG
AAGGGCTTTGGAACAGATGAGGACGCTCTGATTAACATCATCTGTCGGCG
ATCCAACGAGCAGCGCCAGGAGATCCAGCGCCAGTTCAAGACGCACTTCG
GCAAGGACCTCATCGAGGACATCAAGTCGGAGACGAGCGGCAACTTTGAG
AAACTCCTCGTCGGCCTGCTGCGTCCCATCGTGGACTACTACTGCGCCGA
GCTAAACGATGCCATGGCTGGCCTGGGCACCGACGAGGAGGTCCTCATCG
AGATCCTCTGCACGCTGTCCAACATGGAGATCAATACGATCAAAAACCAG
TACTTACGATTGTACGGCGCCCATTTGGAGTCTGAACTAAAGTCGGAGAC
GTCGGGCAACTTTAAGCGGCTGCTCACCTCCTTGTGCACGGCGGCGCGGG
ATGAGAGTGGTCGCGTGGATCCCGTGGCGGCCAAGAACGATGCTAGGGAG
CTACTGAAAGCCGGCGAACTGCGCGTCGGCACCGATGAGAGCATGTTCAA
CATGATCCTCTGCCAGAGGAACTATCAGCAATTGAAACTGATATTCCAAG
AGTACGAGGGCATGACTGGCCACTCGCTGGAGAAGGCGATCAAGAAGGAG
TTCTCCGGCGATGTGATGGAGGGCCTGATTGCCATCTACAGGTGCGTCAC
CAACAAGGCCGAATACTTCGCTTCGCGCCTGCACAAGGCGATGGCCGGAA
TTGGCACCAATGACACCCAGTTGATCCGTGTGATCATCACGCGCAGCGAG
ATTGATATGACGGACAT
BO10115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9968-PA | 969 | Anxb11-RA | 1..851 | 17..867 | 4230 | 99.8 | Plus |
CG9968-PB | 1536 | Anxb11-RB | 580..1418 | 29..867 | 4170 | 99.8 | Plus |
CG5730-PD | 975 | AnnIX-RD | 325..375 | 323..373 | 180 | 94.1 | Plus |
CG5730-PA | 975 | AnnIX-RA | 325..375 | 323..373 | 180 | 94.1 | Plus |
CG5730-PB | 975 | AnnIX-RB | 325..375 | 323..373 | 180 | 94.1 | Plus |
CG5730-PC | 975 | AnnIX-RC | 325..375 | 323..373 | 180 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB11-RF | 1375 | CG9968-RF | 80..930 | 17..867 | 4240 | 99.9 | Plus |
AnxB11-RC | 1429 | CG9968-RC | 134..984 | 17..867 | 4240 | 99.9 | Plus |
AnxB11-RA | 1233 | CG9968-RA | 134..984 | 17..867 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16418668..16419049 | 410..29 | 1910 | 100 | Minus |
X | 23542271 | X | 16418356..16418589 | 644..411 | 1140 | 99.1 | Minus |
X | 23542271 | X | 16418081..16418291 | 850..640 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 21068339..21068413 | 299..373 | 225 | 86.7 | Plus |
Blast to na_te.dros performed 2015-02-02 12:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6376..6439 | 205..144 | 126 | 68.8 | Minus |
BO10115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:30 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9968-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:09 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9968-PA | 1..851 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:01:22 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RA | 129..984 | 12..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:11 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RA | 129..984 | 12..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:11 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16418008..16418024 | 851..867 | 100 | <- | Minus |
X | 16418081..16418290 | 641..850 | 100 | <- | Minus |
X | 16418360..16418589 | 411..640 | 99 | <- | Minus |
X | 16418668..16419049 | 29..410 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:01:22 Download gff for
BO10115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16312041..16312057 | 851..867 | 100 | <- | Minus |
arm_X | 16312114..16312323 | 641..850 | 100 | <- | Minus |
arm_X | 16312393..16312622 | 411..640 | 99 | <- | Minus |
arm_X | 16312701..16313082 | 29..410 | 100 | <- | Minus |
BO10115.complete Sequence
1000 bp assembled on 2008-08-15
GenBank Submission: FJ631649
> BO10115.complete
GAAGTTATCAGTCGTCATGTATCCCTTCGGAACTCCCACGGTGGTGCCTG
CCGCAAACTTCGATGCCGTCAAGGATGCTCACGACTTGCGCAAGGCCATG
AAGGGCTTTGGAACAGATGAGGACGCTCTGATTAACATCATCTGTCGGCG
ATCCAACGAGCAGCGCCAGGAGATCCAGCGCCAGTTCAAGACGCACTTCG
GCAAGGACCTCATCGAGGACATCAAGTCGGAGACGAGCGGCAACTTTGAG
AAACTCCTCGTCGGCCTGCTGCGTCCCATCGTGGACTACTACTGCGCCGA
GCTAAACGATGCCATGGCTGGCCTGGGCACCGACGAGGAGGTCCTCATCG
AGATCCTCTGCACGCTGTCCAACATGGAGATCAATACGATCAAAAACCAG
TACTTACGATTGTACGGCGCCCATTTGGAGTCTGAACTAAAGTCGGAGAC
GTCGGGCAACTTTAAGCGGCTGCTCACCTCCTTGTGCACGGCGGCGCGGG
ATGAGAGTGGTCGCGTGGATCCCGTGGCGGCCAAGAACGATGCTAGGGAG
CTACTGAAAGCCGGCGAACTGCGCGTCGGCACCGATGAGAGCATGTTCAA
CATGATCCTCTGCCAGAGGAACTATCAGCAATTGAAACTGATATTCCAAG
AGTACGAGGGCATGACTGGCCACTCGCTGGAGAAGGCGATCAAGAAGGAG
TTCTCCGGCGATGTGATGGAGGGCCTGATTGCCATCTACAGGTGCGTCAC
CAACAAGGCCGAATACTTCGCTTCGCGCCTGCACAAGGCGATGGCCGGAA
TTGGCACCAATGACACCCAGTTGATCCGTGTGATCATCACGCGCAGCGAG
ATTGATATGACGGACATTAAGGTAGCGTTCGAACGTCTGTACGGCAAGTC
CCTCAAGAGCTGGATCAAGGGCGATACTTCGGGCCACTACAAGCACGCCC
TTTATGCCCTGGTGGGTGAACAGCGCTCCTCTGCAAGCTTTCTAGACCAT
BO10115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB11-RF | 969 | CG9968-PF | 1..966 | 17..982 | 4815 | 99.9 | Plus |
AnxB11-RC | 969 | CG9968-PC | 1..966 | 17..982 | 4815 | 99.9 | Plus |
AnxB11-RA | 969 | CG9968-PA | 1..966 | 17..982 | 4815 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:32:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB11-RF | 1375 | CG9968-RF | 80..1045 | 17..982 | 4815 | 99.9 | Plus |
AnxB11-RC | 1429 | CG9968-RC | 134..1099 | 17..982 | 4815 | 99.9 | Plus |
AnxB11-RA | 1233 | CG9968-RA | 134..1099 | 17..982 | 4815 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:32:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16418668..16419049 | 410..29 | 1910 | 100 | Minus |
X | 23542271 | X | 16418356..16418589 | 644..411 | 1140 | 99.1 | Minus |
X | 23542271 | X | 16418081..16418291 | 850..640 | 1055 | 100 | Minus |
X | 23542271 | X | 16417955..16418026 | 920..849 | 360 | 100 | Minus |
X | 23542271 | X | 16417833..16417897 | 982..918 | 325 | 100 | Minus |
3R | 32079331 | 3R | 21068339..21068413 | 299..373 | 225 | 86.7 | Plus |
Blast to na_te.dros performed 2014-11-27 20:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
opus | 7521 | opus OPUS 7521bp | 6376..6439 | 205..144 | 126 | 68.8 | Minus |
BO10115.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:20 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Anxb11-RA | 103..1077 | 12..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:52 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RA | 134..1099 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:49 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Anxb11-RA | 108..1073 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:26 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
AnxB11-RA | 134..1099 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:26 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16418081..16418290 | 641..850 | 100 | <- | Minus |
X | 16418360..16418589 | 411..640 | 99 | <- | Minus |
X | 16417831..16417895 | 920..984 | 96 | <- | Minus |
X | 16417956..16418024 | 851..919 | 100 | <- | Minus |
X | 16418668..16419049 | 29..410 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:52 Download gff for
BO10115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16311864..16311928 | 920..984 | 96 | <- | Minus |
arm_X | 16311989..16312057 | 851..919 | 100 | <- | Minus |
arm_X | 16312114..16312323 | 641..850 | 100 | <- | Minus |
arm_X | 16312393..16312622 | 411..640 | 99 | <- | Minus |
arm_X | 16312701..16313082 | 29..410 | 100 | <- | Minus |
BO10115.pep Sequence
Translation from 16 to 1000
> BO10115.pep
MYPFGTPTVVPAANFDAVKDAHDLRKAMKGFGTDEDALINIICRRSNEQR
QEIQRQFKTHFGKDLIEDIKSETSGNFEKLLVGLLRPIVDYYCAELNDAM
AGLGTDEEVLIEILCTLSNMEINTIKNQYLRLYGAHLESELKSETSGNFK
RLLTSLCTAARDESGRVDPVAAKNDARELLKAGELRVGTDESMFNMILCQ
RNYQQLKLIFQEYEGMTGHSLEKAIKKEFSGDVMEGLIAIYRCVTNKAEY
FASRLHKAMAGIGTNDTQLIRVIITRSEIDMTDIKVAFERLYGKSLKSWI
KGDTSGHYKHALYALVGEQRSSASFLDH
BO10115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
AnxB11-PF | 322 | CG9968-PF | 1..322 | 1..322 | 1649 | 100 | Plus |
AnxB11-PC | 322 | CG9968-PC | 1..322 | 1..322 | 1649 | 100 | Plus |
AnxB11-PA | 322 | CG9968-PA | 1..322 | 1..322 | 1649 | 100 | Plus |
AnxB11-PG | 511 | CG9968-PG | 194..511 | 5..322 | 1624 | 100 | Plus |
AnxB11-PE | 511 | CG9968-PE | 194..511 | 5..322 | 1624 | 100 | Plus |
AnxB11-PG | 511 | CG9968-PG | 190..357 | 159..327 | 219 | 33.7 | Plus |
AnxB11-PF | 322 | CG9968-PF | 17..168 | 172..327 | 216 | 34 | Plus |
AnxB11-PC | 322 | CG9968-PC | 17..168 | 172..327 | 216 | 34 | Plus |
AnxB11-PA | 322 | CG9968-PA | 17..168 | 172..327 | 216 | 34 | Plus |