Clone BO10122 Report

Search the DGRC for BO10122

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG7920-RA
Protein status:BO10122.pep: Imported from assembly
Sequenced Size:1465

Clone Sequence Records

BO10122.3prime Sequence

935 bp (755 high quality bases) assembled on 2006-04-19

> BO10122.3prime
ATGGTCTAGATAGCTTGCGTTCGGCGAGGGCATTACCTTGATGCGCTCGA
AGGCTTGTTTCTCCAGGGTCTCGCGGTGCTTGGGATCGGCGATCTGGATA
AGTTCGTACATCCTCTGTCGCACGTTCTTGCCGAACAGCGAAGCGATTCC
ATGCTCCGTGACGACGTAGTGGACGTGGGCACGCGAAGTGACGACGCCAG
CGCCTTCCTTCAGCGTGGGAACAATCTTGCTCTCGCCCTTGTTGGTGGTC
GATGGCATGGCAATAATTGGCACACCCAGTCCATCGAGACCCTCCGCCGC
TCCGCGAATGAAGTCCACCTGTCCGCCGAAGCCGGAGTAGAAGCGGGGAC
CAATCGAGTCTGAGCACACCTGTCCAGTCAGATCCACCTCGATGCAGCTG
TTGATGGCCGTCATTCGAGGCTGCTGTTTCACAATGCTGGTGTTGTTCAC
ATAGTCGATGGCGTACATCTCGATGAAGGGATTGTTGTCCACGAAGTCGT
ACAGAGCCTTGTCACCGATGAGGAAGGAGCCCACAATTCTGCCCTGGTGC
ATCTTCTTCTTGCTGTTGGTGACGCATCCCTTGCGCACGAGCTCAACGAC
ACCGTTGGCGAACATCTCGGAGTGGATGCCCAGATCCTTGTGGTTGTGCA
GGGCGGCGAGTACGGCGTCTGGGATGCTGCCAATGCCCATCTGCAGGGTG
GCGCCGTCCTTGACGAGGTTCTCGGCAATGAGCTTGCCGATCTTCTTCTC
CACTTCGGAAATCTTACCAGTTCCGTGCTGAGGCAGATCATCGGTCACCT
CGATGGCGAGGTCGAAGTGAGACTTGTGAATGATGGCATCGCCGAANGTG
CGCGGCATCTTGGGATTGATTTGAGCCACAATGAGCTTCGAGTTGAGCAG
CGCAGCGCGCACACAATCGACGCTGGTGCCGAGGG

BO10122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PA 1434 CG7920-RA 515..1431 935..19 4391 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 685..1601 935..19 4469 99.1 Minus
CG7920-RA 1910 CG7920-RA 804..1720 935..19 4469 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30010666..30011118 19..471 2190 98.9 Plus
3R 32079331 3R 30011203..30011608 471..876 1989 99.3 Plus
3R 32079331 3R 30011669..30011728 876..935 300 100 Plus
Blast to na_te.dros performed 2015-01-31 15:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4550..4627 358..281 111 60.3 Minus

BO10122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:42 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 515..1434 15..935 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:24 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 515..1434 15..935 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:21 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 804..1725 13..935 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:45:17 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 804..1725 13..935 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:45:17 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30010661..30011117 13..470 98 <- Plus
3R 30011203..30011607 471..875 99 <- Plus
3R 30011669..30011728 876..935 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:21 Download gff for BO10122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25836383..25836839 13..470 98 <- Plus
arm_3R 25836925..25837329 471..875 99 <- Plus
arm_3R 25837391..25837450 876..935 100   Plus

BO10122.5prime Sequence

897 bp (856 high quality bases) assembled on 2006-04-19

> BO10122.5prime
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCANGGGATGCGTCAC

BO10122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PA 1434 CG7920-RA 1..881 17..897 4336 99.6 Plus
CG7920-PB 315 CG7920-RB 1..185 17..201 925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:51:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 170..1051 16..897 4369 99.7 Plus
CG7920-RA 1910 CG7920-RA 289..1170 16..897 4369 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30011669..30012062 590..197 1955 99.7 Minus
3R 32079331 3R 30011301..30011608 897..590 1514 99.4 Minus
3R 32079331 3R 30014811..30014996 201..16 930 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:51:31 has no hits.

BO10122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:43 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:26 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:41:26 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 281..1170 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:43:29 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 281..1170 9..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:43:29 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30011301..30011607 591..897 99 <- Minus
3R 30011669..30012061 198..590 99 <- Minus
3R 30014815..30015004 9..197 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:41:26 Download gff for BO10122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25837023..25837329 591..897 99 <- Minus
arm_3R 25837391..25837783 198..590 99 <- Minus
arm_3R 25840537..25840726 9..197 98   Minus

BO10122.complete Sequence

1465 bp assembled on 2011-06-28

> BO10122.complete
GAAGTTATCAGTCGACATGAGCAAACAATTGGCGCGCCATGTGGGCCAGC
TGAACAGCCTCCTGAAGACGGCGGCCACCGCCTCCTCGGTCTCCGCCCAC
AACAACTACTTCACCTACGTGCGGGAGCTGTCGCATCCCATCGCTCGAGA
GCCTCCAATCGTCAAGCCGGAAGAGGCCGTGGCATGTGTAAAATCCGGTG
ACACGGTTTTCGCCGGAGGAGCAGCCGCCACGCCCGTGGCTCTGCTGAAC
GCGATGGCCAAGCACGGAAAGAGCAACAACCTGGAGTGCGTCACGGTGTG
CCACATGCACACGGAGGGTCCTGGCGAGTACGCCAAGCCGGAGTACAAGG
ACCATTTCCGTTCAAACTCCTTCTTCATGGGCGCCAACGTGCGCAAGGCT
GTTGCCGACGGTCGTGGCGATAATGTGCCGATCTTCCTTCACGAGATCCC
GAATCTTTTCTACAAGCAGATCGTAAAGCCAGATGTGTCCTTCATCCACG
TGTCGCCGCCGGATAACCACGGCTACTGCTCCCTCGGCACCAGCGTCGAT
TGTGTGCGCGCTGCGCTGCTCAACTCGAAGCTCATTGTGGCTCAAATCAA
TCCCAAGATGCCGCGCACCTTCGGCGATGCCATCATTCACAAGTCTCACT
TCGACCTCGCCATCGAGGTGACCGATGATCTGCCTCAGCACGGAACTGGT
AAGATTTCCGAAGTGGAGAAGAAGATCGGCAAGCTCATTGCCGAGAACCT
CGTCAAGGACGGCGCCACCCTGCAGATGGGCATTGGCAGCATCCCAGACG
CCGTACTCGCCGCCCTGCACAACCACAAGGATCTGGGCATCCACTCCGAG
ATGTTCGCCAACGGTGTCGTTGAGCTCGTGCGCAAGGGATGCGTCACCAA
CAGCAAGAAGAAGATGCACCAGGGCAGAATTGTGGGCTCCTTCCTCATCG
GTGACAAGGCTCTGTACGACTTCGTGGACAACAATCCCTTCATCGAGATG
TACGCCATCGACTATGTGAACAACACCAGCATTGTGAAACAGCAGCCTCG
AATGACGGCCATCAACAGCTGCATCGAGGTGGATCTGACTGGACAGGTGT
GCTCAGACTCGATTGGTCCCCGCTTCTACTCCGGCTTCGGCGGACAGGTG
GACTTCATTCGCGGAGCGGCGGAGGGTCTCGATGGACTGGGTGTGCCAAT
TATTGCCATGCCATCGACCACCAACAAGGGCGAGAGCAAGATTGTTCCCA
CGCTGAAGGAAGGCGCTGGCGTCGTCACTTCGCGTGCCCACGTCCACTAC
GTCGTCACGGAGCATGGAATCGCTTCGCTGTTCGGCAAGAACGTGCGACA
GAGGATGTACGAACTTATCCAGATCGCCGATCCCAAGCACCGCGAGACCC
TGGAGAAACAAGCCTTCGAGCGCATCAAGGTAATGCCCTCGCCGAACGCA
AGCTATCTAGACCAT

BO10122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1434 CG7920-PC 1..1431 17..1447 7035 99.4 Plus
CG7920-RA 1434 CG7920-PA 1..1431 17..1447 7035 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-RC 1791 CG7920-RC 170..1601 16..1447 7040 99.4 Plus
CG7920-RA 1910 CG7920-RA 289..1720 16..1447 7040 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30010666..30011118 1447..995 2190 98.9 Minus
3R 32079331 3R 30011203..30011608 995..590 2000 99.5 Minus
3R 32079331 3R 30011669..30012062 590..197 1955 99.7 Minus
3R 32079331 3R 30014811..30014996 201..16 930 100 Minus
Blast to na_te.dros performed 2014-11-26 16:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4550..4627 1108..1185 111 60.3 Plus

BO10122.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:30 Download gff for BO10122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 370..1800 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:23 Download gff for BO10122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 290..1720 17..1449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:57 Download gff for BO10122.complete
Subject Subject Range Query Range Percent Splice Strand
CG7920-RA 290..1720 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:57 Download gff for BO10122.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30014815..30014995 17..197 100   Minus
3R 30010664..30011117 996..1449 98 <- Minus
3R 30011203..30011607 591..995 99 <- Minus
3R 30011669..30012061 198..590 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:23 Download gff for BO10122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25840537..25840717 17..197 100   Minus
arm_3R 25836386..25836839 996..1449 98 <- Minus
arm_3R 25836925..25837329 591..995 99 <- Minus
arm_3R 25837391..25837783 198..590 99 <- Minus

BO10122.pep Sequence

Translation from 16 to 1465

> BO10122.pep
MSKQLARHVGQLNSLLKTAATASSVSAHNNYFTYVRELSHPIAREPPIVK
PEEAVACVKSGDTVFAGGAAATPVALLNAMAKHGKSNNLECVTVCHMHTE
GPGEYAKPEYKDHFRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYK
QIVKPDVSFIHVSPPDNHGYCSLGTSVDCVRAALLNSKLIVAQINPKMPR
TFGDAIIHKSHFDLAIEVTDDLPQHGTGKISEVEKKIGKLIAENLVKDGA
TLQMGIGSIPDAVLAALHNHKDLGIHSEMFANGVVELVRKGCVTNSKKKM
HQGRIVGSFLIGDKALYDFVDNNPFIEMYAIDYVNNTSIVKQQPRMTAIN
SCIEVDLTGQVCSDSIGPRFYSGFGGQVDFIRGAAEGLDGLGVPIIAMPS
TTNKGESKIVPTLKEGAGVVTSRAHVHYVVTEHGIASLFGKNVRQRMYEL
IQIADPKHRETLEKQAFERIKVMPSPNASYLDH

BO10122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7920-PC 477 CG7920-PC 1..477 1..477 2480 100 Plus
CG7920-PA 477 CG7920-PA 1..477 1..477 2480 100 Plus