Clone Sequence Records
BO10123.3prime Sequence
924 bp (854 high quality bases) assembled on 2006-04-19
> BO10123.3prime
ATGGTCTAGAAAGCTTGCGAACTGAAACGGCGGCGTATCTCGGCAGGTGT
GGGAGCCCATCGGCGTGATGACCACGTGCAGGGTAAGCGTGTTGCGAGCG
GTGCCCGTCAGATGGGGACTCAAGTACAGTGATGTGTGCTCCAGCTCCTC
GTACGGCAGCAGGTTGTCCAGGTTGACGACGCGCGACGTATCGGAGAAGT
ACTCCGTACGCTCTACAACTGTGCGGATGTGCATAATCTGGTTTTGCATG
CCAACGATCAGCACGGCGATCTTAAATCGCTCCTCTCCGATGTTTTGATG
CTTGCAGGTAACCCGTAGACGCACTGTGTTCAAAGAGCAGCCTGGTACGT
CCTCGCCCCATACCATTTTGGCCTTGTTATACCTAACGCCTCGCGGGAAA
AACTCGATTTCCCATGTCATGCAGGGATCGTCCTCCTCAGTCTCGGCAAT
GTGTCGCTGCGAAAAGAAGCAGGTCACATAGTTCTTATAATCCTCGATCG
CGGTAAAGTTGTGCACATCGATGTCGACGCTCCAGGTGTCGTTCCAATAT
AGCCGCGGCGTAAACTGCAGCTTACCCGATTCGGTGGCTCGCACCTCTCG
CACCCGATCCTCATGGCCCGATTGATAGCTCATGCCGATGGCAATGCGCT
CGACGAGGAACTCTTTGTGATACTCGACCAGCGGATCCATTAGCAGGTGT
GAGAGCTGGCGCGGCGTCATCATGCCGAAGCGTATGTGGGACACAGTCTG
TTCGATCAGTTCCATGAAACCGCCACTGCCAGTGGCCTCCATCTGTTCGC
GACGATGCAGCAGCCACGTCTGCAGGATGTCAAACAATTTGTACTCGCTG
GTGACAACCAGATCGTTCTGCTGCAACAGCAGTATCAGTATGGCCGGGGT
CCATTTCAACAAAGTCCCGCGACT
BO10123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1841-PB | 1764 | CG1841-RB | 882..1761 | 898..19 | 4400 | 100 | Minus |
| CG1841-PA | 1764 | CG1841-RA | 882..1761 | 898..19 | 4400 | 100 | Minus |
| CG1841-PB | 1764 | CG1841-RB | 857..884 | 924..897 | 140 | 100 | Minus |
| CG1841-PA | 1764 | CG1841-RA | 857..884 | 924..897 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 1223..2127 | 924..19 | 4505 | 99.9 | Minus |
| Tango10-RA | 3008 | CG1841-RA | 1035..1939 | 924..19 | 4505 | 99.9 | Minus |
| Tango10-RB | 3247 | CG1841-RB | 1274..2178 | 924..19 | 4505 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721689..11722183 | 924..429 | 2430 | 99.8 | Minus |
| X | 23542271 | X | 11722528..11722785 | 276..19 | 1275 | 99.6 | Minus |
| X | 23542271 | X | 11722250..11722408 | 429..271 | 795 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:38:55 has no hits.
BO10123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:44 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1841-PA | 857..1764 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:27 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1841-PA | 857..1764 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:44 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 1274..2181 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:04:33 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 1274..2181 | 15..924 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:04:33 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11721689..11722183 | 429..924 | 99 | -> | Minus |
| X | 11722251..11722408 | 271..428 | 100 | -> | Minus |
| X | 11722534..11722788 | 15..270 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:44 Download gff for
BO10123.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11615722..11616216 | 429..924 | 99 | -> | Minus |
| arm_X | 11616284..11616441 | 271..428 | 100 | -> | Minus |
| arm_X | 11616567..11616821 | 15..270 | 99 | | Minus |
BO10123.5prime Sequence
918 bp (804 high quality bases) assembled on 2006-04-19
> BO10123.5prime
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGNCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAAATGGACCC
GGCCATACTGATACTGCT
BO10123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1841-PB | 1764 | CG1841-RB | 1..902 | 17..918 | 4491 | 99.8 | Plus |
| CG1841-PA | 1764 | CG1841-RA | 1..902 | 17..918 | 4491 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 367..1268 | 17..918 | 4499 | 99.9 | Plus |
| Tango10-RA | 3008 | CG1841-RA | 179..1080 | 17..918 | 4499 | 99.9 | Plus |
| Tango10-RB | 3247 | CG1841-RB | 418..1319 | 17..918 | 4499 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721198..11721734 | 382..918 | 2674 | 99.8 | Plus |
| X | 23542271 | X | 11720662..11721027 | 17..382 | 1830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:31:38 has no hits.
BO10123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:45 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1841-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:29 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1841-PA | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:40:19 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1319 | 13..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:59 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 416..1319 | 13..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:59 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11720660..11721027 | 13..382 | 99 | -> | Plus |
| X | 11721199..11721734 | 383..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:40:19 Download gff for
BO10123.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11615232..11615767 | 383..918 | 99 | | Plus |
| arm_X | 11614693..11615060 | 13..382 | 99 | -> | Plus |
BO10123.complete Sequence
1795 bp (1795 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631651
> BO10123.complete
GAAGTTATCAGTCGACATGAACGACAACGGTAACGGCGGAGCAGCGCCAG
TCTCCGGTGGAGTGTGCGGTGTTGGTGGTGCGCACGGAGCGGCTGGTGGC
GCTGATGGTGCTGGTGGTGCTGGCGGTGGCGGCGGATGCGGGGCTGGCGG
TGGAGGTGCTGGTGCAGGTCCGGGCGGGGGTCCCGGGGGCGGAGCAGCTG
CTGCGGACCTGGCTGGCGAGGCAGCTGGAGGAGCAGCAGGTGGTGATGCA
GCCATTAATAACCAAGCTAATGCCAATGGAACCAGCGAGAGCCCAGCGAA
AGGACTTAATTCTAGCGAGGATCTGGACGCCAAGCGGCGCAAGTGTCGCG
AAACGGAAGAAGGCCAGGATGAAGCCAGCACGATGATCGATGCGAATAGT
GTGCTCAATAAGATCGCCAACCTGTACGCCGAACAGCTGATGTCGGACAT
AGTGCTACTGGTGGACGGCAAGGAGTTTCCCGCCCACCGCGTCATCCTCT
GTGCCAGCAGCGACGTCTTTCAGGTGATGCTAATGAATCCGGAGTGGAAC
GAGTGCAGCAAGCACGTGATCGAATTGCACGAGGAAGCCTGCTGTTCGGC
GGTGTTTCCGCAGTTCATCAAGTACCTATACGTTGGCCAAATCGAGGTCA
CGCTGCAGACGGTGATGCCAATGCTGGCGCTGAGCGACAAGTACAATATA
CGCGACCTGATCGATCTCTGCGTGGACTACATGAACAAGCACGTGGCCAA
GGCGGCCACCAGCGGTTATCTTGTGTCCTGGCTGCAATATACGCTCTCCT
TCACGCCCACCCACAACGATCTCACCGAAACACTCAAGCGGTTTCTCAAA
TGGAACCTCGAGATGGTTGCCGAGTCGCGGGACTTTGTTGAAATGGACCC
GGCCATACTGATACTGCTGTTGCAGCAGAACGATCTGGTTGTCACCAGCG
AGTACAAATTGTTTGACATCCTGCAGACGTGGCTGCTGCATCGTCGCGAA
CAGATGGAGGCCACTGGCAGTGGCGGTTTCATGGAACTGATCGAACAGAC
TGTGTCCCACATACGCTTCGGCATGATGACGCCGCGCCAGCTCTCACACC
TGCTAATGGATCCGCTGGTCGAGTATCACAAAGAGTTCCTCGTCGAGCGC
ATTGCCATCGGCATGAGCTATCAATCGGGCCATGAGGATCGGGTGCGAGA
GGTGCGAGCCACCGAATCGGGTAAGCTGCAGTTTACGCCGCGGCTATATT
GGAACGACACCTGGAGCGTCGACATCGATGTGCACAACTTTACCGCGATC
GAGGATTATAAGAACTATGTGACCTGCTTCTTTTCGCAGCGACACATTGC
CGAGACTGAGGAGGACGATCCCTGCATGACATGGGAAATCGAGTTTTTCC
CGCGAGGCGTTAGGTATAACAAGGCCAAAATGGTATGGGGCGAGGACGTA
CCAGGCTGCTCTTTGAACACAGTGCGTCTACGGGTTACCTGCAAGCATCA
AAACATCGGAGAGGAGCGATTTAAGATCGCCGTGCTGATCGTTGGCATGC
AAAACCAGATTATGCACATCCGCACAGTTGTAGAGCGTACGGAGTACTTC
TCCGATACGTCGCGCGTCGTCAACCTGGACAACCTGCTGCCGTACGAGGA
GCTGGAGCACACATCACTGTACTTGAGTCCCCATCTGACGGGCACCGCTC
GCAACACGCTTACCCTGCACGTGGTCATCACGCCGATGGGCTCCCACACC
TGCCGAGATACGCCGCCGTTTCAGTTCGCAAGCTTTCTAGACCAT
BO10123.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 1764 | CG1841-PC | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| Tango10-RA | 1764 | CG1841-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
| Tango10-RB | 1764 | CG1841-PB | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-RC | 3196 | CG1841-RC | 367..2127 | 17..1777 | 8805 | 100 | Plus |
| Tango10-RA | 3008 | CG1841-RA | 179..1939 | 17..1777 | 8805 | 100 | Plus |
| Tango10-RB | 3247 | CG1841-RB | 418..2178 | 17..1777 | 8805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11721198..11722183 | 382..1367 | 4930 | 100 | Plus |
| X | 23542271 | X | 11720662..11721027 | 17..382 | 1830 | 100 | Plus |
| X | 23542271 | X | 11722528..11722785 | 1520..1777 | 1275 | 99.6 | Plus |
| X | 23542271 | X | 11722250..11722408 | 1367..1525 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:04:45 has no hits.
BO10123.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:34 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RA | 1..1764 | 17..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:14 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RA | 177..1942 | 13..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:32:58 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 418..2178 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:34 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RA | 177..1942 | 13..1781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:45 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango10-RB | 418..2178 | 17..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:45 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11720662..11721027 | 17..382 | 100 | -> | Plus |
| X | 11721199..11722183 | 383..1367 | 100 | -> | Plus |
| X | 11722251..11722408 | 1368..1525 | 100 | -> | Plus |
| X | 11722534..11722785 | 1526..1779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:32:58 Download gff for
BO10123.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11614695..11615060 | 17..382 | 100 | -> | Plus |
| arm_X | 11615232..11616216 | 383..1367 | 100 | -> | Plus |
| arm_X | 11616284..11616441 | 1368..1525 | 100 | -> | Plus |
| arm_X | 11616567..11616818 | 1526..1779 | 99 | | Plus |
BO10123.pep Sequence
Translation from 16 to 1795
> BO10123.pep
MNDNGNGGAAPVSGGVCGVGGAHGAAGGADGAGGAGGGGGCGAGGGGAGA
GPGGGPGGGAAAADLAGEAAGGAAGGDAAINNQANANGTSESPAKGLNSS
EDLDAKRRKCRETEEGQDEASTMIDANSVLNKIANLYAEQLMSDIVLLVD
GKEFPAHRVILCASSDVFQVMLMNPEWNECSKHVIELHEEACCSAVFPQF
IKYLYVGQIEVTLQTVMPMLALSDKYNIRDLIDLCVDYMNKHVAKAATSG
YLVSWLQYTLSFTPTHNDLTETLKRFLKWNLEMVAESRDFVEMDPAILIL
LLQQNDLVVTSEYKLFDILQTWLLHRREQMEATGSGGFMELIEQTVSHIR
FGMMTPRQLSHLLMDPLVEYHKEFLVERIAIGMSYQSGHEDRVREVRATE
SGKLQFTPRLYWNDTWSVDIDVHNFTAIEDYKNYVTCFFSQRHIAETEED
DPCMTWEIEFFPRGVRYNKAKMVWGEDVPGCSLNTVRLRVTCKHQNIGEE
RFKIAVLIVGMQNQIMHIRTVVERTEYFSDTSRVVNLDNLLPYEELEHTS
LYLSPHLTGTARNTLTLHVVITPMGSHTCRDTPPFQFASFLDH
BO10123.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango10-PC | 587 | CG1841-PC | 1..587 | 1..587 | 3104 | 100 | Plus |
| Tango10-PA | 587 | CG1841-PA | 1..587 | 1..587 | 3104 | 100 | Plus |
| Tango10-PB | 587 | CG1841-PB | 1..587 | 1..587 | 3104 | 100 | Plus |
| lute-PA | 677 | CG5319-PA | 76..395 | 5..330 | 184 | 23.7 | Plus |
| lute-PC | 727 | CG43226-PC | 126..445 | 5..330 | 184 | 23.7 | Plus |
