Clone BO10125 Report

Search the DGRC for BO10125

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptade5-RA
Protein status:BO10125.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO10125.3prime Sequence

944 bp (763 high quality bases) assembled on 2006-04-19

> BO10125.3prime
ATGGTCTAGAAAGCTTGCAGCATTTCGCACGCCGCGCAACTCCTTGTCGG
CCTTCTTGAGAGTGATAAAGTTGTTGAGCGCCTTGACACGCAATTTCGAC
CAGACCATGAAGTTGCCCAGCCCCAGAATGGTGGCCGCATGCAGAGCAGC
TGCCTCTGGATAGAGAACTGTGGCACAGCCCAGCCCCGATGGCAGATTCA
AGCTGGACCACACGTCCACCTGCATGTTGTCCGATTTGACGGGCGGACAA
TTGATTACCGGATAGTTGGTGCTGCCGGAAACGACTGGACCCAGTCCATT
GGATCGCCCGGCGACGGCCACAAAGATCAAGTTGCTCATCACCGATTCAT
ATTCGCGGACAATGCGCAACGTTTCCTCCGGTCCCTTGTGGGCCGAACTC
ACGCGAAGTTCCACATTAAGGCCGAGGGATCGACAGCTGGTGGCTATCTT
CTCGCTGTGCGATATATCGGAAGCACTGCCCATCAGAATGACAACCAGGT
GATCCTTCTTGGGCACAATATCAGCCAGTTGTTCGGCCACCCAAATGAAG
TTCCTCTTTACGGTATCCAAATCGCTGGCCGTCACCGATGCCAGATTGCG
ATACACCTGCTTGTCGACCATCAAACGCTTGTCACCCGCTGGCCACAAGC
GCCACGAATCGGAATCAATGATATCGGCCAGAACTATGTTGCCATCGTCG
CAGATACCGAACTCCACTTTCATGTCGATCAGGGCGCAATTCTTGGTCTG
CCATGCCCTCTCGAGAATCTCGAAGACCAGCAGTGTGGTTCTACGCATAA
TGTCCACCTCATCTTGGCCGATCACCAGGCCATTTAGCTCGAACTTGGCG
GAGACAATTTGCTCCTCGCTCCACTGGGGATCGTGGTTTGCATCATCCTT
GAAGAACGTCTCCTGTTTGGGCGGCGAGAACCTGTAGCCCTCGG

BO10125.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3989-PA 1290 ade5-RA 362..1287 944..19 4605 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:00
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RB 2547 CG3989-RB 603..1528 944..19 4615 99.9 Minus
ade5-RA 1826 CG3989-RA 606..1531 944..19 4615 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758055..12758855 19..819 4005 100 Plus
X 23542271 X 12758922..12759038 818..934 570 99.1 Plus
2L 23513712 2L 12454066..12454367 912..611 385 75.2 Minus
Blast to na_te.dros performed on 2015-02-12 03:53:59 has no hits.

BO10125.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:48 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-PA 362..1290 18..944 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:33 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3989-PA 362..1290 18..944 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:16:23 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 606..1536 11..944 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:56 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 606..1536 11..944 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:56 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12758050..12758854 11..818 99 <- Plus
X 12758923..12759035 819..931 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:16:23 Download gff for BO10125.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652083..12652887 11..818 99 <- Plus
arm_X 12652956..12653068 819..931 99 <- Plus

BO10125.5prime Sequence

874 bp (809 high quality bases) assembled on 2006-04-19

> BO10125.5prime
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAA

BO10125.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3989-PA 1290 ade5-RA 1..857 17..873 4285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1826 CG3989-RA 241..1101 13..873 4290 99.9 Plus
ade5-RB 2547 CG3989-RB 241..1098 13..873 4235 99.5 Plus
CG40801-RB 429 CG40801-RB 58..403 44..393 1530 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758485..12758855 873..503 1855 100 Minus
X 23542271 X 12759711..12759915 246..42 1025 100 Minus
Y 3667352 Y 3059275..3059477 246..44 925 97 Minus
Y 3667352 Y 3231313..3231515 44..246 925 97 Plus
Y 3667352 Y 3267332..3267534 246..44 910 96.6 Minus
U 3151297 U 2460018..2460220 44..246 910 96.6 Plus
X 23542271 X 12759460..12759610 393..243 755 100 Minus
Y 3667352 Y 3267089..3267236 393..242 620 95.4 Minus
X 23542271 X 12758922..12759038 504..388 585 100 Minus
Y 3667352 Y 3059062..3059204 393..247 580 94.6 Minus
Y 3667352 Y 3091728..3091870 186..44 565 93 Minus
Y 3667352 Y 3205824..3205966 44..186 565 93 Plus
Y 3667352 Y 3231586..3231711 247..376 510 94.6 Plus
Blast to na_te.dros performed 2015-02-02 12:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\TRAM 3452 Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). 1485..1524 312..273 110 75 Minus

BO10125.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:49 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:34 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3989-PA 1..855 17..871 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:01:20 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 236..1099 7..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:09 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 236..1099 7..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:09 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12758487..12758854 504..871 100 <- Minus
X 12758923..12759035 391..503 100 <- Minus
X 12759463..12759607 246..390 100 <- Minus
X 12759712..12759915 42..245 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:01:20 Download gff for BO10125.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652520..12652887 504..871 100 <- Minus
arm_X 12652956..12653068 391..503 100 <- Minus
arm_X 12653496..12653640 246..390 100 <- Minus
arm_X 12653745..12653948 42..245 100 <- Minus

BO10125.complete Sequence

1321 bp (1321 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631652

> BO10125.complete
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGG
CCTTAATGTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAA
CGTTGCGCATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTT
GTGGCCGTCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAG
CACCAACTATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGC
AGGTGGACGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCC
ACAGTTCTCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGG
GCTGGGCAACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACA
ACTTTATCACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAAT
GCTGCAAGCTTTCTAGACCAT

BO10125.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1290 CG3989-PA 1..1287 17..1303 6435 100 Plus
ade5-RB 1287 CG3989-PB 1..1284 17..1303 6355 99.8 Plus
CG40801-RB 429 CG40801-PB 58..403 44..393 1505 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-RA 1826 CG3989-RA 241..1531 13..1303 6440 99.9 Plus
ade5-RB 2547 CG3989-RB 241..1528 13..1303 6360 99.7 Plus
CG40801-RB 429 CG40801-RB 58..403 44..393 1505 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12758055..12758855 1303..503 4005 100 Minus
X 23542271 X 12759711..12759915 246..42 1025 100 Minus
Y 3667352 Y 3059275..3059477 246..44 925 97 Minus
Y 3667352 Y 3231313..3231515 44..246 925 97 Plus
Y 3667352 Y 3267332..3267534 246..44 910 96.6 Minus
U 3151297 U 2460018..2460220 44..246 910 96.6 Plus
X 23542271 X 12759460..12759610 393..243 755 100 Minus
2L 23513712 2L 12453715..12454367 59..711 700 73.8 Plus
Ymm 880023 Ymm 562058..562204 44..190 645 95.9 Plus
Y 3667352 Y 3267089..3267236 393..242 620 95.4 Minus
U 3151297 U 2460316..2460463 242..393 620 95.4 Plus
X 23542271 X 12758922..12759038 504..388 585 100 Minus
Y 3667352 Y 3059062..3059204 393..247 580 94.6 Minus
Y 3667352 Y 3205824..3205966 44..186 565 93 Plus
Y 3667352 Y 3091728..3091870 186..44 565 93 Minus
Ymm 880023 Ymm 631403..631545 186..44 565 93 Minus
Y 3667352 Y 3231586..3231711 247..376 510 94.6 Plus
Blast to na_te.dros performed on 2014-11-27 06:49:34 has no hits.

BO10125.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:41 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 1..1290 17..1304 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:31 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 237..1537 7..1311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:33 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 245..1531 17..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:41 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 237..1537 7..1311 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:24 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
ade5-RA 245..1531 17..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:24 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
X 12758053..12758854 504..1305 99 <- Minus
X 12758923..12759035 391..503 100 <- Minus
X 12759463..12759607 246..390 100 <- Minus
X 12759712..12759915 42..245 100 <- Minus
X 12760349..12760373 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:33 Download gff for BO10125.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12652086..12652887 504..1305 99 <- Minus
arm_X 12652956..12653068 391..503 100 <- Minus
arm_X 12653496..12653640 246..390 100 <- Minus
arm_X 12653745..12653948 42..245 100 <- Minus
arm_X 12654382..12654406 17..41 100   Minus

BO10125.pep Sequence

Translation from 16 to 1321

> BO10125.pep
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNAASFLDH

BO10125.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
ade5-PA 429 CG3989-PA 1..429 1..429 2207 100 Plus
ade5-PB 428 CG3989-PB 1..428 1..429 2187 99.5 Plus
CG40801-PB 142 CG40801-PB 19..122 9..112 524 97.1 Plus