Clone Sequence Records
BO10125.3prime Sequence
944 bp (763 high quality bases) assembled on 2006-04-19
> BO10125.3prime
ATGGTCTAGAAAGCTTGCAGCATTTCGCACGCCGCGCAACTCCTTGTCGG
CCTTCTTGAGAGTGATAAAGTTGTTGAGCGCCTTGACACGCAATTTCGAC
CAGACCATGAAGTTGCCCAGCCCCAGAATGGTGGCCGCATGCAGAGCAGC
TGCCTCTGGATAGAGAACTGTGGCACAGCCCAGCCCCGATGGCAGATTCA
AGCTGGACCACACGTCCACCTGCATGTTGTCCGATTTGACGGGCGGACAA
TTGATTACCGGATAGTTGGTGCTGCCGGAAACGACTGGACCCAGTCCATT
GGATCGCCCGGCGACGGCCACAAAGATCAAGTTGCTCATCACCGATTCAT
ATTCGCGGACAATGCGCAACGTTTCCTCCGGTCCCTTGTGGGCCGAACTC
ACGCGAAGTTCCACATTAAGGCCGAGGGATCGACAGCTGGTGGCTATCTT
CTCGCTGTGCGATATATCGGAAGCACTGCCCATCAGAATGACAACCAGGT
GATCCTTCTTGGGCACAATATCAGCCAGTTGTTCGGCCACCCAAATGAAG
TTCCTCTTTACGGTATCCAAATCGCTGGCCGTCACCGATGCCAGATTGCG
ATACACCTGCTTGTCGACCATCAAACGCTTGTCACCCGCTGGCCACAAGC
GCCACGAATCGGAATCAATGATATCGGCCAGAACTATGTTGCCATCGTCG
CAGATACCGAACTCCACTTTCATGTCGATCAGGGCGCAATTCTTGGTCTG
CCATGCCCTCTCGAGAATCTCGAAGACCAGCAGTGTGGTTCTACGCATAA
TGTCCACCTCATCTTGGCCGATCACCAGGCCATTTAGCTCGAACTTGGCG
GAGACAATTTGCTCCTCGCTCCACTGGGGATCGTGGTTTGCATCATCCTT
GAAGAACGTCTCCTGTTTGGGCGGCGAGAACCTGTAGCCCTCGG
BO10125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3989-PA | 1290 | ade5-RA | 362..1287 | 944..19 | 4605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RB | 2547 | CG3989-RB | 603..1528 | 944..19 | 4615 | 99.9 | Minus |
ade5-RA | 1826 | CG3989-RA | 606..1531 | 944..19 | 4615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758055..12758855 | 19..819 | 4005 | 100 | Plus |
X | 23542271 | X | 12758922..12759038 | 818..934 | 570 | 99.1 | Plus |
2L | 23513712 | 2L | 12454066..12454367 | 912..611 | 385 | 75.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:53:59 has no hits.
BO10125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:48 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-PA | 362..1290 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:33 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3989-PA | 362..1290 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:16:23 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 606..1536 | 11..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:47:56 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 606..1536 | 11..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:47:56 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758050..12758854 | 11..818 | 99 | <- | Plus |
X | 12758923..12759035 | 819..931 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:16:23 Download gff for
BO10125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652083..12652887 | 11..818 | 99 | <- | Plus |
arm_X | 12652956..12653068 | 819..931 | 99 | <- | Plus |
BO10125.5prime Sequence
874 bp (809 high quality bases) assembled on 2006-04-19
> BO10125.5prime
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAA
BO10125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3989-PA | 1290 | ade5-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1826 | CG3989-RA | 241..1101 | 13..873 | 4290 | 99.9 | Plus |
ade5-RB | 2547 | CG3989-RB | 241..1098 | 13..873 | 4235 | 99.5 | Plus |
CG40801-RB | 429 | CG40801-RB | 58..403 | 44..393 | 1530 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758485..12758855 | 873..503 | 1855 | 100 | Minus |
X | 23542271 | X | 12759711..12759915 | 246..42 | 1025 | 100 | Minus |
Y | 3667352 | Y | 3059275..3059477 | 246..44 | 925 | 97 | Minus |
Y | 3667352 | Y | 3231313..3231515 | 44..246 | 925 | 97 | Plus |
Y | 3667352 | Y | 3267332..3267534 | 246..44 | 910 | 96.6 | Minus |
U | 3151297 | U | 2460018..2460220 | 44..246 | 910 | 96.6 | Plus |
X | 23542271 | X | 12759460..12759610 | 393..243 | 755 | 100 | Minus |
Y | 3667352 | Y | 3267089..3267236 | 393..242 | 620 | 95.4 | Minus |
X | 23542271 | X | 12758922..12759038 | 504..388 | 585 | 100 | Minus |
Y | 3667352 | Y | 3059062..3059204 | 393..247 | 580 | 94.6 | Minus |
Y | 3667352 | Y | 3091728..3091870 | 186..44 | 565 | 93 | Minus |
Y | 3667352 | Y | 3205824..3205966 | 44..186 | 565 | 93 | Plus |
Y | 3667352 | Y | 3231586..3231711 | 247..376 | 510 | 94.6 | Plus |
Blast to na_te.dros performed 2015-02-02 12:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 1485..1524 | 312..273 | 110 | 75 | Minus |
BO10125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:49 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:34 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3989-PA | 1..855 | 17..871 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:01:20 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 236..1099 | 7..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:42:09 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 236..1099 | 7..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:42:09 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758487..12758854 | 504..871 | 100 | <- | Minus |
X | 12758923..12759035 | 391..503 | 100 | <- | Minus |
X | 12759463..12759607 | 246..390 | 100 | <- | Minus |
X | 12759712..12759915 | 42..245 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:01:20 Download gff for
BO10125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652520..12652887 | 504..871 | 100 | <- | Minus |
arm_X | 12652956..12653068 | 391..503 | 100 | <- | Minus |
arm_X | 12653496..12653640 | 246..390 | 100 | <- | Minus |
arm_X | 12653745..12653948 | 42..245 | 100 | <- | Minus |
BO10125.complete Sequence
1321 bp (1321 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631652
> BO10125.complete
GAAGTTATCAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCT
ATAAGCTCGGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGAT
CTGCCAGAGCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCAC
CGCCGGCGATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCT
CCAATACCACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATT
CGCACCGCCTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAA
GTGCCAGATGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTT
CGTTCCTCAAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCG
CCCAAACAGGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTG
GAGCGAGGAGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGA
TCGGCCAAGATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTC
GAGATTCTCGAGAGGGCATGGCAGACCAAGAATTGCGCCCTGATCGACAT
GAAAGTGGAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATA
TCATTGATTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTG
ATGGTCGACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGA
TTTGGATACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTG
ATATTGTGCCCAAGAAGGATCACCTGGTTGTCATTCTGATGGGCAGTGCT
TCCGATATATCGCACAGCGAGAAGATAGCCACCAGCTGTCGATCCCTCGG
CCTTAATGTGGAACTTCGCGTGAGTTCGGCCCACAAGGGACCGGAGGAAA
CGTTGCGCATTGTCCGCGAATATGAATCGGTGATGAGCAACTTGATCTTT
GTGGCCGTCGCCGGGCGATCCAATGGACTGGGTCCAGTCGTTTCCGGCAG
CACCAACTATCCGGTAATCAATTGTCCGCCCGTCAAATCGGACAACATGC
AGGTGGACGTGTGGTCCAGCTTGAATCTGCCATCGGGGCTGGGCTGTGCC
ACAGTTCTCTATCCAGAGGCAGCTGCTCTGCATGCGGCCACCATTCTGGG
GCTGGGCAACTTCATGGTCTGGTCGAAATTGCGTGTCAAGGCGCTCAACA
ACTTTATCACTCTCAAGAAGGCCGACAAGGAGTTGCGCGGCGTGCGAAAT
GCTGCAAGCTTTCTAGACCAT
BO10125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1290 | CG3989-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
ade5-RB | 1287 | CG3989-PB | 1..1284 | 17..1303 | 6355 | 99.8 | Plus |
CG40801-RB | 429 | CG40801-PB | 58..403 | 44..393 | 1505 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-RA | 1826 | CG3989-RA | 241..1531 | 13..1303 | 6440 | 99.9 | Plus |
ade5-RB | 2547 | CG3989-RB | 241..1528 | 13..1303 | 6360 | 99.7 | Plus |
CG40801-RB | 429 | CG40801-RB | 58..403 | 44..393 | 1505 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:49:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12758055..12758855 | 1303..503 | 4005 | 100 | Minus |
X | 23542271 | X | 12759711..12759915 | 246..42 | 1025 | 100 | Minus |
Y | 3667352 | Y | 3059275..3059477 | 246..44 | 925 | 97 | Minus |
Y | 3667352 | Y | 3231313..3231515 | 44..246 | 925 | 97 | Plus |
Y | 3667352 | Y | 3267332..3267534 | 246..44 | 910 | 96.6 | Minus |
U | 3151297 | U | 2460018..2460220 | 44..246 | 910 | 96.6 | Plus |
X | 23542271 | X | 12759460..12759610 | 393..243 | 755 | 100 | Minus |
2L | 23513712 | 2L | 12453715..12454367 | 59..711 | 700 | 73.8 | Plus |
Ymm | 880023 | Ymm | 562058..562204 | 44..190 | 645 | 95.9 | Plus |
Y | 3667352 | Y | 3267089..3267236 | 393..242 | 620 | 95.4 | Minus |
U | 3151297 | U | 2460316..2460463 | 242..393 | 620 | 95.4 | Plus |
X | 23542271 | X | 12758922..12759038 | 504..388 | 585 | 100 | Minus |
Y | 3667352 | Y | 3059062..3059204 | 393..247 | 580 | 94.6 | Minus |
Y | 3667352 | Y | 3205824..3205966 | 44..186 | 565 | 93 | Plus |
Y | 3667352 | Y | 3091728..3091870 | 186..44 | 565 | 93 | Minus |
Ymm | 880023 | Ymm | 631403..631545 | 186..44 | 565 | 93 | Minus |
Y | 3667352 | Y | 3231586..3231711 | 247..376 | 510 | 94.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:49:34 has no hits.
BO10125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:41 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 1..1290 | 17..1304 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:31 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 237..1537 | 7..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:33 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 245..1531 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:41 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 237..1537 | 7..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:24 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ade5-RA | 245..1531 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:24 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12758053..12758854 | 504..1305 | 99 | <- | Minus |
X | 12758923..12759035 | 391..503 | 100 | <- | Minus |
X | 12759463..12759607 | 246..390 | 100 | <- | Minus |
X | 12759712..12759915 | 42..245 | 100 | <- | Minus |
X | 12760349..12760373 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:33 Download gff for
BO10125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12652086..12652887 | 504..1305 | 99 | <- | Minus |
arm_X | 12652956..12653068 | 391..503 | 100 | <- | Minus |
arm_X | 12653496..12653640 | 246..390 | 100 | <- | Minus |
arm_X | 12653745..12653948 | 42..245 | 100 | <- | Minus |
arm_X | 12654382..12654406 | 17..41 | 100 | | Minus |
BO10125.pep Sequence
Translation from 16 to 1321
> BO10125.pep
MSTTTTASIEGYKLGKVIIEGKTKQVYDLPEQPGLCLLLSKDRITAGDGV
KAHDLAGKAEISNTTNGQVFRLLNEAGIRTAYVKQCGAKAFIARKCQMIP
IEWVTRRLATGSFLKRNVGVPEGYRFSPPKQETFFKDDANHDPQWSEEQI
VSAKFELNGLVIGQDEVDIMRRTTLLVFEILERAWQTKNCALIDMKVEFG
ICDDGNIVLADIIDSDSWRLWPAGDKRLMVDKQVYRNLASVTASDLDTVK
RNFIWVAEQLADIVPKKDHLVVILMGSASDISHSEKIATSCRSLGLNVEL
RVSSAHKGPEETLRIVREYESVMSNLIFVAVAGRSNGLGPVVSGSTNYPV
INCPPVKSDNMQVDVWSSLNLPSGLGCATVLYPEAAALHAATILGLGNFM
VWSKLRVKALNNFITLKKADKELRGVRNAASFLDH
BO10125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ade5-PA | 429 | CG3989-PA | 1..429 | 1..429 | 2207 | 100 | Plus |
ade5-PB | 428 | CG3989-PB | 1..428 | 1..429 | 2187 | 99.5 | Plus |
CG40801-PB | 142 | CG40801-PB | 19..122 | 9..112 | 524 | 97.1 | Plus |