Clone BO10128 Report

Search the DGRC for BO10128

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptyip2-RA
Protein status:BO10128.pep: validated full length
Sequenced Size:1228

Clone Sequence Records

BO10128.3prime Sequence

862 bp (797 high quality bases) assembled on 2006-04-19

> BO10128.3prime
ATGGTCTAGAAAGCTTGCGACAGCCTCGAGGAGAAGGGCGATGCCCTGAC
CACCACCAATGCACGCGGATCCAATGCCGTACTTTAGCTTCTTGCGCTGC
AACTCATGAACCAGATGACCAGTGATGCGAGAGCCACTGGCACCCAGAGG
ATGGCCCAAGGCGATGGCGCCTCCGTTCACATTCAGTTTGGAGGTATCCA
ACTTCAGGGCATCGGCGCAAGCCAATGTCTGGGCAGCAAAGGCTTCGTTG
ATCTCAATCAGATCAATATCCTCCAGTTTCTTGCCGGAAACCTTCAGGAC
GTTCTGAATGGCGGGTACTGGGCCAATGCCCATGATCTCAGGCTTGACTC
CGACAAAGGAGAAGGCCACTAGACGGGCCAGAGGCTTCAGGTTGTACTCC
TTAAGCGCCTCCTCGGAGGCCACGATCACTGCGGAGGCACCATCACAGAT
TCCGGATGCTGTTCCGGCAGTCACAACGCCGTTCTTCTTAAACAGCGAAG
GCAGCTTGTTCAGACCCTCGATGGTGGTCTTGGGACGTGGGTGCTCGTCC
ACCACAAAGTCCACTTCCTTTCCCTTGACCTTAAGTTTGATGGGTGTGAT
CTCGGCATTGAATGCTCCCTCCTTCTGACCCTTCTCCCAGTTCTTTTGCG
AGAGCAGAGAGAACTCATCCACACGCTCCCTACTGATCTTGTACTGATCG
GCCAGGTTCTCAGCGGTCAGAGCCATGGGCAGCTTGCAGTAGGTATCGGT
GAGGCCAGCCCATAGAGCATCCTCCAGATTGTAGCTGGCACCCAAGGTGG
TTCCGAATCTCACATTACGGGCAATGAAAGGGCTCTGTGACATGTTCTCC
ACGCCGCCGGTA

BO10128.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4600-PA 1197 yip2-RA 351..1194 862..19 4220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:52
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 446..1289 862..19 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916216..9916981 862..97 3830 100 Minus
2L 23513712 2L 9917040..9917118 97..19 395 100 Minus
Blast to na_te.dros performed 2015-02-12 13:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 756..711 113 71.7 Minus

BO10128.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:54 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-PA 352..1197 15..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:41 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4600-PA 352..1197 15..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:12:14 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 447..1292 15..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:09:20 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 447..1292 15..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:09:20 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9916217..9916980 98..861 100 -> Minus
2L 9917040..9917121 15..97 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:12:14 Download gff for BO10128.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9916217..9916980 98..861 100 -> Minus
arm_2L 9917040..9917121 15..97 97   Minus

BO10128.5prime Sequence

914 bp (806 high quality bases) assembled on 2006-04-19

> BO10128.5prime
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCATTAC

BO10128.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4600-PA 1197 yip2-RA 1..894 17..910 4470 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 96..993 17..914 4475 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916763 202..914 3550 99.9 Plus
2L 23513712 2L 9915621..9915791 32..202 855 100 Plus
Blast to na_te.dros performed 2015-02-13 08:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 473..518 113 71.7 Plus

BO10128.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:55 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:42 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4600-PA 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:41:48 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..993 17..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:47:18 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..993 17..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:47:18 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9915348..9915366 17..35 100 -> Plus
2L 9915625..9915791 36..202 100 -> Plus
2L 9916052..9916763 203..914 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:41:48 Download gff for BO10128.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9915348..9915366 17..35 100 -> Plus
arm_2L 9915625..9915791 36..202 100 -> Plus
arm_2L 9916052..9916763 203..914 99   Plus

BO10128.complete Sequence

1228 bp (1228 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631653

> BO10128.complete
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGGCAAGA
AACTGGAGGATATTGATCTGATTGAGATCAACGAAGCCTTTGCTGCCCAG
ACATTGGCTTGCGCCGATGCCCTGAAGTTGGATACCTCCAAACTGAATGT
GAACGGAGGCGCCATCGCCTTGGGCCATCCTCTGGGTGCCAGTGGCTCTC
GCATCACTGGTCATCTGGTTCATGAGTTGCAGCGCAAGAAGCTAAAGTAC
GGCATTGGATCCGCGTGCATTGGTGGTGGTCAGGGCATCGCCCTTCTCCT
CGAGGCTGTCGCAAGCTTTCTAGACCAT

BO10128.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:42
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1197 CG4600-PA 1..1194 17..1210 5970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-RA 1391 CG4600-RA 96..1289 17..1210 5970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9916051..9916981 202..1132 4655 100 Plus
2L 23513712 2L 9915621..9915791 32..202 855 100 Plus
2L 23513712 2L 9917040..9917118 1132..1210 395 100 Plus
Blast to na_te.dros performed 2014-11-28 00:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 1665..1710 473..518 113 71.7 Plus

BO10128.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:44 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 1..1197 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:32 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 94..1290 17..1214 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:29 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..1289 17..1212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:44 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 94..1290 17..1214 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:37 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
yip2-RA 96..1289 17..1212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:37 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9915348..9915366 17..35 100 -> Plus
2L 9915625..9915791 36..202 100 -> Plus
2L 9916052..9916980 203..1131 100 -> Plus
2L 9917040..9917118 1132..1212 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:29 Download gff for BO10128.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9915348..9915366 17..35 100 -> Plus
arm_2L 9915625..9915791 36..202 100 -> Plus
arm_2L 9916052..9916980 203..1131 100 -> Plus
arm_2L 9917040..9917118 1132..1212 97   Plus

BO10128.pep Sequence

Translation from 16 to 1228

> BO10128.pep
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAVAS
FLDH

BO10128.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:36
Subject Length Description Subject Range Query Range Score Percent Strand
yip2-PA 398 CG4600-PA 1..398 1..398 2005 100 Plus
CG9149-PA 392 CG9149-PA 4..392 8..399 821 43.1 Plus
CG10932-PB 410 CG10932-PB 25..408 8..396 613 35.5 Plus
CG10932-PA 410 CG10932-PA 25..408 8..396 613 35.5 Plus
Thiolase-PA 469 CG4581-PA 41..461 5..396 400 32.1 Plus