Clone Sequence Records
BO10128.3prime Sequence
862 bp (797 high quality bases) assembled on 2006-04-19
> BO10128.3prime
ATGGTCTAGAAAGCTTGCGACAGCCTCGAGGAGAAGGGCGATGCCCTGAC
CACCACCAATGCACGCGGATCCAATGCCGTACTTTAGCTTCTTGCGCTGC
AACTCATGAACCAGATGACCAGTGATGCGAGAGCCACTGGCACCCAGAGG
ATGGCCCAAGGCGATGGCGCCTCCGTTCACATTCAGTTTGGAGGTATCCA
ACTTCAGGGCATCGGCGCAAGCCAATGTCTGGGCAGCAAAGGCTTCGTTG
ATCTCAATCAGATCAATATCCTCCAGTTTCTTGCCGGAAACCTTCAGGAC
GTTCTGAATGGCGGGTACTGGGCCAATGCCCATGATCTCAGGCTTGACTC
CGACAAAGGAGAAGGCCACTAGACGGGCCAGAGGCTTCAGGTTGTACTCC
TTAAGCGCCTCCTCGGAGGCCACGATCACTGCGGAGGCACCATCACAGAT
TCCGGATGCTGTTCCGGCAGTCACAACGCCGTTCTTCTTAAACAGCGAAG
GCAGCTTGTTCAGACCCTCGATGGTGGTCTTGGGACGTGGGTGCTCGTCC
ACCACAAAGTCCACTTCCTTTCCCTTGACCTTAAGTTTGATGGGTGTGAT
CTCGGCATTGAATGCTCCCTCCTTCTGACCCTTCTCCCAGTTCTTTTGCG
AGAGCAGAGAGAACTCATCCACACGCTCCCTACTGATCTTGTACTGATCG
GCCAGGTTCTCAGCGGTCAGAGCCATGGGCAGCTTGCAGTAGGTATCGGT
GAGGCCAGCCCATAGAGCATCCTCCAGATTGTAGCTGGCACCCAAGGTGG
TTCCGAATCTCACATTACGGGCAATGAAAGGGCTCTGTGACATGTTCTCC
ACGCCGCCGGTA
BO10128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4600-PA | 1197 | yip2-RA | 351..1194 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 446..1289 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916216..9916981 | 862..97 | 3830 | 100 | Minus |
2L | 23513712 | 2L | 9917040..9917118 | 97..19 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 13:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 756..711 | 113 | 71.7 | Minus |
BO10128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:54 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-PA | 352..1197 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:41 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4600-PA | 352..1197 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:12:14 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 447..1292 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:09:20 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 447..1292 | 15..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:09:20 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9916217..9916980 | 98..861 | 100 | -> | Minus |
2L | 9917040..9917121 | 15..97 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:12:14 Download gff for
BO10128.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9916217..9916980 | 98..861 | 100 | -> | Minus |
arm_2L | 9917040..9917121 | 15..97 | 97 | | Minus |
BO10128.5prime Sequence
914 bp (806 high quality bases) assembled on 2006-04-19
> BO10128.5prime
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCATTAC
BO10128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4600-PA | 1197 | yip2-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 96..993 | 17..914 | 4475 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916051..9916763 | 202..914 | 3550 | 99.9 | Plus |
2L | 23513712 | 2L | 9915621..9915791 | 32..202 | 855 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 08:56:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 473..518 | 113 | 71.7 | Plus |
BO10128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:55 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:42 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4600-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:41:48 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..993 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:47:18 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..993 | 17..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:47:18 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
2L | 9916052..9916763 | 203..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:41:48 Download gff for
BO10128.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
arm_2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
arm_2L | 9916052..9916763 | 203..914 | 99 | | Plus |
BO10128.complete Sequence
1228 bp (1228 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631653
> BO10128.complete
GAAGTTATCAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGG
CTGCCAAGCGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATC
AACCAGACCCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGC
CGGTCTTAAGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCG
CGTCCTCCTCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAAC
TGCGGTGTGCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGG
TTCCGGCTTCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCG
GTGCCAAGATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCT
TTCATTGCCCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAA
TCTGGAGGATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGC
CCATGGCTCTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGG
GAGCGTGTGGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGG
TCAGAAGGAGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGG
TCAAGGGAAAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAG
ACCACCATCGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGG
CGTTGTGACTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAG
TGATCGTGGCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTCTG
GCCCGTCTAGTGGCCTTCTCCTTTGTCGGAGTCAAGCCTGAGATCATGGG
CATTGGCCCAGTACCCGCCATTCAGAACGTCCTGAAGGTTTCCGGCAAGA
AACTGGAGGATATTGATCTGATTGAGATCAACGAAGCCTTTGCTGCCCAG
ACATTGGCTTGCGCCGATGCCCTGAAGTTGGATACCTCCAAACTGAATGT
GAACGGAGGCGCCATCGCCTTGGGCCATCCTCTGGGTGCCAGTGGCTCTC
GCATCACTGGTCATCTGGTTCATGAGTTGCAGCGCAAGAAGCTAAAGTAC
GGCATTGGATCCGCGTGCATTGGTGGTGGTCAGGGCATCGCCCTTCTCCT
CGAGGCTGTCGCAAGCTTTCTAGACCAT
BO10128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1197 | CG4600-PA | 1..1194 | 17..1210 | 5970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-RA | 1391 | CG4600-RA | 96..1289 | 17..1210 | 5970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9916051..9916981 | 202..1132 | 4655 | 100 | Plus |
2L | 23513712 | 2L | 9915621..9915791 | 32..202 | 855 | 100 | Plus |
2L | 23513712 | 2L | 9917040..9917118 | 1132..1210 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 00:55:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 473..518 | 113 | 71.7 | Plus |
BO10128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:44 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 1..1197 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:32 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 94..1290 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:29 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1289 | 17..1212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:44 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 94..1290 | 17..1214 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:37 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yip2-RA | 96..1289 | 17..1212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:37 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
2L | 9916052..9916980 | 203..1131 | 100 | -> | Plus |
2L | 9917040..9917118 | 1132..1212 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:29 Download gff for
BO10128.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9915348..9915366 | 17..35 | 100 | -> | Plus |
arm_2L | 9915625..9915791 | 36..202 | 100 | -> | Plus |
arm_2L | 9916052..9916980 | 203..1131 | 100 | -> | Plus |
arm_2L | 9917040..9917118 | 1132..1212 | 97 | | Plus |
BO10128.pep Sequence
Translation from 16 to 1228
> BO10128.pep
MSAATKGIYIVAAKRTAFGTFGGSLKGINQTQLQTTAAKAALDAAGLKGE
QVDTVIVGNVIASSSTDGIYVPRHVGLNCGVPIEKPALGINRLCGSGFQS
IVNGAQDILVGGAKIALTGGVENMSQSPFIARNVRFGTTLGASYNLEDAL
WAGLTDTYCKLPMALTAENLADQYKISRERVDEFSLLSQKNWEKGQKEGA
FNAEITPIKLKVKGKEVDFVVDEHPRPKTTIEGLNKLPSLFKKNGVVTAG
TASGICDGASAVIVASEEALKEYNLKPLARLVAFSFVGVKPEIMGIGPVP
AIQNVLKVSGKKLEDIDLIEINEAFAAQTLACADALKLDTSKLNVNGGAI
ALGHPLGASGSRITGHLVHELQRKKLKYGIGSACIGGGQGIALLLEAVAS
FLDH
BO10128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yip2-PA | 398 | CG4600-PA | 1..398 | 1..398 | 2005 | 100 | Plus |
CG9149-PA | 392 | CG9149-PA | 4..392 | 8..399 | 821 | 43.1 | Plus |
CG10932-PB | 410 | CG10932-PB | 25..408 | 8..396 | 613 | 35.5 | Plus |
CG10932-PA | 410 | CG10932-PA | 25..408 | 8..396 | 613 | 35.5 | Plus |
Thiolase-PA | 469 | CG4581-PA | 41..461 | 5..396 | 400 | 32.1 | Plus |