Clone Sequence Records
BO10129.3prime Sequence
913 bp (859 high quality bases) assembled on 2006-04-19
> BO10129.3prime
ATGGTCTAGAAAGCTTGCACGTTTCTTGAGGCGCTTGGGAGCAGCATTGG
CAGGTGTCTCCTTGTAGTTGGCCGGCAAAATACTCCAGTCCTTGAACGGA
TTGGTTGCCACCTGATACAGACGCTGAGTGATTGTCTCATTGGTGGTTAC
TCTTGTCTGCTCGGCAATGTGTATTATGATATTGTTGAATGCCTGCAAGG
CATATGTACCAAAGGACTCTCGCCATACCAACTCGTCGAGGAATTGTTGA
ATCATCTGGCGAGATAGCAACGATAGGGTGTTCTGGAACATGCGCGGCAC
AATCCGTCGCAAATATTCCATTACCGCTGAGTTGTTGTGCTTGGCTGTGT
TGTCAGTGGCAGCTGCTTGGACAATATTTTTGAATCCCATGCTGAAGAGG
GTGATCTTGTCGACAGTCAAGTCTATACAAATGGTGCTGTCCTTGTGCAC
CCAGCGCGACAGTGGCTCAAGAATGGCCTGGAATCGCTTTTTGTAGTTAC
GATCACCATCGGTGATTGGCTCTACAGCCCGCAGTCGGATGGACTTCTCC
GCATAATCATAGACGCCCAGAACCTCAACTTTCACTTGTCGCTGGGAGCC
ATCTTGGGATGTGGTTCCTAGGGAAATAACACCCACCTCCACAAACTTGC
CGGGACCGCCCAGCTTCTTGCATTTTTGATGCACTGCCAAAGTGCAAATG
GCTCTAAGCCAGGTGTAGATTCCTTTGATATAAACACTGTCCACCTTAAC
CCACTGCACCACATTTTGAATACTGGTCTGGCAAGCCCAGTGGTAAATTA
ACTTCAACAGGAATGTGGGTGGGTGCTGAGCTCCTTCGAAAATGGAATTG
TTGAACACGGAGACGAAGCGGTAGGGGCAACATTCGCTGATCCACACATA
GCCACCAGTGTAG
BO10129.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8092-PB | 1809 | CG8092-RB | 912..1806 | 913..19 | 4475 | 100 | Minus |
CG8092-PA | 3846 | CG8092-RA | 912..1804 | 913..21 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
row-RB | 2281 | CG8092-RB | 1057..1951 | 913..19 | 4475 | 100 | Minus |
row-RC | 4414 | CG8092-RC | 1057..1949 | 913..21 | 4465 | 100 | Minus |
row-RA | 4414 | CG8092-RA | 1057..1949 | 913..21 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15211724..15212527 | 110..913 | 4020 | 100 | Plus |
2R | 25286936 | 2R | 15211575..15211669 | 19..113 | 475 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 642..730 | 451..362 | 113 | 64.1 | Minus |
BO10129.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:56 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-PB | 912..1809 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:44 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-PB | 912..1809 | 18..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:30:38 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RB | 1057..1951 | 19..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:08 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RB | 1057..1951 | 19..913 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:08 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15211575..15211667 | 19..111 | 100 | <- | Plus |
2R | 15211726..15212527 | 112..913 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:30:38 Download gff for
BO10129.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11099080..11099172 | 19..111 | 100 | <- | Plus |
arm_2R | 11099231..11100032 | 112..913 | 100 | | Plus |
BO10129.5prime Sequence
854 bp (785 high quality bases) assembled on 2006-04-19
> BO10129.5prime
GAAGTTATCAGTCGACATGACGCGCGTAACGAGAAGTGAAATCTCCCTGG
ACATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTAC
GAGAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGC
GGTTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGG
CCTACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTG
CCCAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCA
AAGCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCA
ACATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTG
GCCAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAA
TGCATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTG
CTAGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTT
AAGGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGC
CGAGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCA
AGGATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAG
ACATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGA
CATGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCA
TGCTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTA
CGCG
BO10129.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8092-PA | 3846 | CG8092-RA | 1..838 | 17..854 | 4190 | 100 | Plus |
CG8092-PB | 1809 | CG8092-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
row-RC | 4414 | CG8092-RC | 146..983 | 17..854 | 4190 | 100 | Plus |
row-RB | 2281 | CG8092-RB | 146..983 | 17..854 | 4190 | 100 | Plus |
row-RA | 4414 | CG8092-RA | 146..983 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15212652..15213489 | 854..17 | 4190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 04:23:55 has no hits.
BO10129.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:57 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:45 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:30 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RA | 141..983 | 11..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:23:23 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RA | 141..983 | 11..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:23:23 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15212652..15213494 | 11..854 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:30 Download gff for
BO10129.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11100157..11100999 | 11..854 | 99 | | Minus |
BO10129.complete Sequence
1840 bp (1840 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631654
> BO10129.complete
GAAGTTATCAGTCGACATGACGCGCGTAACGAGAAGTGAAATCTCCCTGG
ACATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTAC
GAGAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGC
GGTTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGG
CCTACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTG
CCCAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCA
AAGCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCA
ACATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTG
GCCAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAA
TGCATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTG
CTAGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTT
AAGGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGC
CGAGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCA
AGGATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAG
ACATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGA
CATGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCA
TGCTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTA
CGCGCTCAACAGCATTGCATAAACCATCGCAACAACGAGCTCAAATTGGG
AATTTATTCGGATGTGACCAAGTTTCCCTACACTGGTGGCTATGTGTGGA
TCAGCGAATGTTGCCCCTACCGCTTCGTCTCCGTGTTCAACAATTCCATT
TTCGAAGGAGCTCAGCACCCACCCACATTCCTGTTGAAGTTAATTTACCA
CTGGGCTTGCCAGACCAGTATTCAAAATGTGGTGCAGTGGGTTAAGGTGG
ACAGTGTTTATATCAAAGGAATCTACACCTGGCTTAGAGCCATTTGCACT
TTGGCAGTGCATCAAAAATGCAAGAAGCTGGGCGGTCCCGGCAAGTTTGT
GGAGGTGGGTGTTATTTCCCTAGGAACCACATCCCAAGATGGCTCCCAGC
GACAAGTGAAAGTTGAGGTTCTGGGCGTCTATGATTATGCGGAGAAGTCC
ATCCGACTGCGGGCTGTAGAGCCAATCACCGATGGTGATCGTAACTACAA
AAAGCGATTCCAGGCCATTCTTGAGCCACTGTCGCGCTGGGTGCACAAGG
ACAGCACCATTTGTATAGACTTGACTGTCGACAAGATCACCCTCTTCAGC
ATGGGATTCAAAAATATTGTCCAAGCAGCTGCCACTGACAACACAGCCAA
GCACAACAACTCAGCGGTAATGGAATATTTGCGACGGATTGTGCCGCGCA
TGTTCCAGAACACCCTATCGTTGCTATCTCGCCAGATGATTCAACAATTC
CTCGACGAGTTGGTATGGCGAGAGTCCTTTGGTACATATGCCTTGCAGGC
ATTCAACAATATCATAATACACATTGCCGAGCAGACAAGAGTAACCACCA
ATGAGACAATCACTCAGCGTCTGTATCAGGTGGCAACCAATCCGTTCAAG
GACTGGAGTATTTTGCCGGCCAACTACAAGGAGACACCTGCCAATGCTGC
TCCCAAGCGCCTCAAGAAACGTGCAAGCTTTCTAGACCAT
BO10129.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
row-RB | 1809 | CG8092-PB | 1..1806 | 17..1822 | 9030 | 100 | Plus |
row-RC | 3906 | CG8092-PC | 1..1804 | 17..1820 | 9020 | 100 | Plus |
row-RA | 3846 | CG8092-PA | 1..1804 | 17..1820 | 9020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
row-RB | 2281 | CG8092-RB | 146..1951 | 17..1822 | 9030 | 100 | Plus |
row-RC | 4414 | CG8092-RC | 146..1949 | 17..1820 | 9020 | 100 | Plus |
row-RA | 4414 | CG8092-RA | 146..1949 | 17..1820 | 9020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15212606..15213489 | 900..17 | 4420 | 100 | Minus |
2R | 25286936 | 2R | 15211724..15212556 | 1731..899 | 4165 | 100 | Minus |
2R | 25286936 | 2R | 15211575..15211669 | 1822..1728 | 475 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 20:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Idefix | 7411 | Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). | 642..730 | 1390..1479 | 113 | 64.1 | Plus |
BO10129.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:07 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-RB | 1..1809 | 17..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:23 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-RB | 139..1949 | 11..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:32 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RB | 146..1951 | 17..1824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:07 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8092-RB | 139..1949 | 11..1822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:27 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
row-RB | 146..1951 | 17..1824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:27 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15211573..15211667 | 1730..1824 | 97 | <- | Minus |
2R | 15211726..15212555 | 900..1729 | 100 | <- | Minus |
2R | 15212607..15213489 | 17..899 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:32 Download gff for
BO10129.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11099078..11099172 | 1730..1824 | 97 | <- | Minus |
arm_2R | 11099231..11100060 | 900..1729 | 100 | <- | Minus |
arm_2R | 11100112..11100994 | 17..899 | 100 | | Minus |
BO10129.pep Sequence
Translation from 16 to 1840
> BO10129.pep
MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE
GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG
RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF
TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV
GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR
SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV
TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT
SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI
SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA
ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA
VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII
IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK
KRASFLDH
BO10129.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
row-PB | 602 | CG8092-PB | 1..602 | 1..602 | 3121 | 100 | Plus |
row-PC | 1301 | CG8092-PC | 1..608 | 1..608 | 3118 | 99 | Plus |
row-PA | 1281 | CG8092-PA | 1..608 | 1..608 | 3118 | 99 | Plus |