Clone BO10129 Report

Search the DGRC for BO10129

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptrow-RB
Protein status:BO10129.pep: validated full length
Sequenced Size:1840

Clone Sequence Records

BO10129.3prime Sequence

913 bp (859 high quality bases) assembled on 2006-04-19

> BO10129.3prime
ATGGTCTAGAAAGCTTGCACGTTTCTTGAGGCGCTTGGGAGCAGCATTGG
CAGGTGTCTCCTTGTAGTTGGCCGGCAAAATACTCCAGTCCTTGAACGGA
TTGGTTGCCACCTGATACAGACGCTGAGTGATTGTCTCATTGGTGGTTAC
TCTTGTCTGCTCGGCAATGTGTATTATGATATTGTTGAATGCCTGCAAGG
CATATGTACCAAAGGACTCTCGCCATACCAACTCGTCGAGGAATTGTTGA
ATCATCTGGCGAGATAGCAACGATAGGGTGTTCTGGAACATGCGCGGCAC
AATCCGTCGCAAATATTCCATTACCGCTGAGTTGTTGTGCTTGGCTGTGT
TGTCAGTGGCAGCTGCTTGGACAATATTTTTGAATCCCATGCTGAAGAGG
GTGATCTTGTCGACAGTCAAGTCTATACAAATGGTGCTGTCCTTGTGCAC
CCAGCGCGACAGTGGCTCAAGAATGGCCTGGAATCGCTTTTTGTAGTTAC
GATCACCATCGGTGATTGGCTCTACAGCCCGCAGTCGGATGGACTTCTCC
GCATAATCATAGACGCCCAGAACCTCAACTTTCACTTGTCGCTGGGAGCC
ATCTTGGGATGTGGTTCCTAGGGAAATAACACCCACCTCCACAAACTTGC
CGGGACCGCCCAGCTTCTTGCATTTTTGATGCACTGCCAAAGTGCAAATG
GCTCTAAGCCAGGTGTAGATTCCTTTGATATAAACACTGTCCACCTTAAC
CCACTGCACCACATTTTGAATACTGGTCTGGCAAGCCCAGTGGTAAATTA
ACTTCAACAGGAATGTGGGTGGGTGCTGAGCTCCTTCGAAAATGGAATTG
TTGAACACGGAGACGAAGCGGTAGGGGCAACATTCGCTGATCCACACATA
GCCACCAGTGTAG

BO10129.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8092-PB 1809 CG8092-RB 912..1806 913..19 4475 100 Minus
CG8092-PA 3846 CG8092-RA 912..1804 913..21 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
row-RB 2281 CG8092-RB 1057..1951 913..19 4475 100 Minus
row-RC 4414 CG8092-RC 1057..1949 913..21 4465 100 Minus
row-RA 4414 CG8092-RA 1057..1949 913..21 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15211724..15212527 110..913 4020 100 Plus
2R 25286936 2R 15211575..15211669 19..113 475 100 Plus
Blast to na_te.dros performed 2015-02-10 19:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 642..730 451..362 113 64.1 Minus

BO10129.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:56 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8092-PB 912..1809 18..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:44 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8092-PB 912..1809 18..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:30:38 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
row-RB 1057..1951 19..913 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:24:08 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
row-RB 1057..1951 19..913 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:24:08 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15211575..15211667 19..111 100 <- Plus
2R 15211726..15212527 112..913 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:30:38 Download gff for BO10129.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11099080..11099172 19..111 100 <- Plus
arm_2R 11099231..11100032 112..913 100   Plus

BO10129.5prime Sequence

854 bp (785 high quality bases) assembled on 2006-04-19

> BO10129.5prime
GAAGTTATCAGTCGACATGACGCGCGTAACGAGAAGTGAAATCTCCCTGG
ACATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTAC
GAGAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGC
GGTTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGG
CCTACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTG
CCCAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCA
AAGCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCA
ACATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTG
GCCAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAA
TGCATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTG
CTAGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTT
AAGGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGC
CGAGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCA
AGGATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAG
ACATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGA
CATGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCA
TGCTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTA
CGCG

BO10129.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8092-PA 3846 CG8092-RA 1..838 17..854 4190 100 Plus
CG8092-PB 1809 CG8092-RB 1..838 17..854 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 04:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
row-RC 4414 CG8092-RC 146..983 17..854 4190 100 Plus
row-RB 2281 CG8092-RB 146..983 17..854 4190 100 Plus
row-RA 4414 CG8092-RA 146..983 17..854 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 04:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15212652..15213489 854..17 4190 100 Minus
Blast to na_te.dros performed on 2015-02-10 04:23:55 has no hits.

BO10129.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:30:57 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8092-PB 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:45 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8092-PB 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:51:30 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
row-RA 141..983 11..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:23:23 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
row-RA 141..983 11..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:23:23 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15212652..15213494 11..854 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:51:30 Download gff for BO10129.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11100157..11100999 11..854 99   Minus

BO10129.complete Sequence

1840 bp (1840 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ631654

> BO10129.complete
GAAGTTATCAGTCGACATGACGCGCGTAACGAGAAGTGAAATCTCCCTGG
ACATGGAGTTCTGGGTGGAGGAGCTGTCGCCGGCACAATTGGCGTACTAC
GAGAAGATTACTAACGAGCACAACGCGGTGAAGGGTGCACTAAAGAACGC
GGTTAGCGCCAACGAGGGCAAGGAGCTGTTTAACGGCCAGGTGTTCCAGG
CCTACTCCTTTAAGGGCAAAGTGCTGCAGGAGCTCAAGGAGGCTACGCTG
CCCAAAAAACCACCCAAGCCGACGGACTCTCCCTCAACACCCGCCGCCCA
AAGCGGTGGCACAGGGCGGGGTCGTGGCCGCCCACCACGACAACCATCCA
ACATCGCCTACCTGGAGTCCTCCGATGAGGGAGACGACGATATGCCGCTG
GCCAAGCGACTGGCGCTGTCTGCAGGCAAAAAAGCAGTGGCCGTGGCCAA
TGCATCTTCCTCGTTCACCCCGAAATCCAGTAAGAAGGCTGCATCCGCTG
CTAGTGGAGGATCTTCTTCACCGGTACCTAAGAGCAGTGGAAAACTATTT
AAGGAATCCAAACCGGACATCGAATCGCCGCCGAAGAACTACCGCCCCGC
CGAGGTTAATTCGGTGGGCGGTCTGGTGGTGGGCAGCACCGACGAAAGCA
AGGATAGCAAAGACGGCAAGGATGGCAAGGATAACAAGATGCAAGGAAAG
ACATATCCATCTCTGGTGGTGCTAGCAAAGCCTTTTCTCAAGATCAAAGA
CATGGCTGCCACCCGCAGCAAGCTGGACTCGAAGGTTAAGCTGGTGCTCA
TGCTTACGCCCAATAAATTCTGCGAGTGGCTGCTCCAGGAGGGATTGCTA
CGCGCTCAACAGCATTGCATAAACCATCGCAACAACGAGCTCAAATTGGG
AATTTATTCGGATGTGACCAAGTTTCCCTACACTGGTGGCTATGTGTGGA
TCAGCGAATGTTGCCCCTACCGCTTCGTCTCCGTGTTCAACAATTCCATT
TTCGAAGGAGCTCAGCACCCACCCACATTCCTGTTGAAGTTAATTTACCA
CTGGGCTTGCCAGACCAGTATTCAAAATGTGGTGCAGTGGGTTAAGGTGG
ACAGTGTTTATATCAAAGGAATCTACACCTGGCTTAGAGCCATTTGCACT
TTGGCAGTGCATCAAAAATGCAAGAAGCTGGGCGGTCCCGGCAAGTTTGT
GGAGGTGGGTGTTATTTCCCTAGGAACCACATCCCAAGATGGCTCCCAGC
GACAAGTGAAAGTTGAGGTTCTGGGCGTCTATGATTATGCGGAGAAGTCC
ATCCGACTGCGGGCTGTAGAGCCAATCACCGATGGTGATCGTAACTACAA
AAAGCGATTCCAGGCCATTCTTGAGCCACTGTCGCGCTGGGTGCACAAGG
ACAGCACCATTTGTATAGACTTGACTGTCGACAAGATCACCCTCTTCAGC
ATGGGATTCAAAAATATTGTCCAAGCAGCTGCCACTGACAACACAGCCAA
GCACAACAACTCAGCGGTAATGGAATATTTGCGACGGATTGTGCCGCGCA
TGTTCCAGAACACCCTATCGTTGCTATCTCGCCAGATGATTCAACAATTC
CTCGACGAGTTGGTATGGCGAGAGTCCTTTGGTACATATGCCTTGCAGGC
ATTCAACAATATCATAATACACATTGCCGAGCAGACAAGAGTAACCACCA
ATGAGACAATCACTCAGCGTCTGTATCAGGTGGCAACCAATCCGTTCAAG
GACTGGAGTATTTTGCCGGCCAACTACAAGGAGACACCTGCCAATGCTGC
TCCCAAGCGCCTCAAGAAACGTGCAAGCTTTCTAGACCAT

BO10129.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
row-RB 1809 CG8092-PB 1..1806 17..1822 9030 100 Plus
row-RC 3906 CG8092-PC 1..1804 17..1820 9020 100 Plus
row-RA 3846 CG8092-PA 1..1804 17..1820 9020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
row-RB 2281 CG8092-RB 146..1951 17..1822 9030 100 Plus
row-RC 4414 CG8092-RC 146..1949 17..1820 9020 100 Plus
row-RA 4414 CG8092-RA 146..1949 17..1820 9020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15212606..15213489 900..17 4420 100 Minus
2R 25286936 2R 15211724..15212556 1731..899 4165 100 Minus
2R 25286936 2R 15211575..15211669 1822..1728 475 100 Minus
Blast to na_te.dros performed 2014-11-27 20:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 642..730 1390..1479 113 64.1 Plus

BO10129.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:07 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 1..1809 17..1823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:23 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 139..1949 11..1822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:32 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 146..1951 17..1824 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:07 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
CG8092-RB 139..1949 11..1822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:27 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
row-RB 146..1951 17..1824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:27 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15211573..15211667 1730..1824 97 <- Minus
2R 15211726..15212555 900..1729 100 <- Minus
2R 15212607..15213489 17..899 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:32 Download gff for BO10129.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11099078..11099172 1730..1824 97 <- Minus
arm_2R 11099231..11100060 900..1729 100 <- Minus
arm_2R 11100112..11100994 17..899 100   Minus

BO10129.pep Sequence

Translation from 16 to 1840

> BO10129.pep
MTRVTRSEISLDMEFWVEELSPAQLAYYEKITNEHNAVKGALKNAVSANE
GKELFNGQVFQAYSFKGKVLQELKEATLPKKPPKPTDSPSTPAAQSGGTG
RGRGRPPRQPSNIAYLESSDEGDDDMPLAKRLALSAGKKAVAVANASSSF
TPKSSKKAASAASGGSSSPVPKSSGKLFKESKPDIESPPKNYRPAEVNSV
GGLVVGSTDESKDSKDGKDGKDNKMQGKTYPSLVVLAKPFLKIKDMAATR
SKLDSKVKLVLMLTPNKFCEWLLQEGLLRAQQHCINHRNNELKLGIYSDV
TKFPYTGGYVWISECCPYRFVSVFNNSIFEGAQHPPTFLLKLIYHWACQT
SIQNVVQWVKVDSVYIKGIYTWLRAICTLAVHQKCKKLGGPGKFVEVGVI
SLGTTSQDGSQRQVKVEVLGVYDYAEKSIRLRAVEPITDGDRNYKKRFQA
ILEPLSRWVHKDSTICIDLTVDKITLFSMGFKNIVQAAATDNTAKHNNSA
VMEYLRRIVPRMFQNTLSLLSRQMIQQFLDELVWRESFGTYALQAFNNII
IHIAEQTRVTTNETITQRLYQVATNPFKDWSILPANYKETPANAAPKRLK
KRASFLDH

BO10129.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
row-PB 602 CG8092-PB 1..602 1..602 3121 100 Plus
row-PC 1301 CG8092-PC 1..608 1..608 3118 99 Plus
row-PA 1281 CG8092-PA 1..608 1..608 3118 99 Plus