Clone BO10133 Report

Search the DGRC for BO10133

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptRpL4-RA
Protein status:BO10133.pep: validated full length
Sequenced Size:1237

Clone Sequence Records

BO10133.3prime Sequence

955 bp (835 high quality bases) assembled on 2006-04-19

> BO10133.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCCGCTGGCTTCTTGGCGGCGACCT
TCTTCTTGCGGGCGGCCAGCAGCTTGGCGCGATTGGCCGCAGCCTTGGTG
GCCACATTGGCGAAGTGCGACTTGGCCAGCTCGACGTTCTGCTTCTTGGC
CTTGGCCAGCACCTTGGCCACGGTGCGCTTCTCGGCGGCGAGGGCGGCAC
GACGCTTGAGGACCTCGGCATAGGGGTTAAGCTTGATCAGCTGGCGCACG
TTGGTCAGGGGGTTCAGGCGGCGCACGCTGCGGAACACACGCTTGCGGGG
ATCGCGCAACACCTTGCGGATCTCCTCAGACTTGAGCAGACGCGACAGAT
CGGTGTTGGCCATCTTGGGCTGGGGCAGGTTGTAGCCCTTCTTCAAGGTG
GACGGCTTCTTCCAGGTGCCGAACAGATCGTTCAGGCGGGCGAAAGCCGA
CTCGGTCCAGATGACAAAGCGACCGACATGACCGCCGGGGGCCAGCTTCA
GCAGATTGAGCTTGTCCACGTTGATGGTCTCAATGCCGGGGATGTTGCGG
AAGGCCTTGCGCAGACCCTCGTCCTTGTCGTAGACCACCAGGGGACCACG
GCGAGCGATGCGGCGACGGTCGCGCATGGTACCACGGCCAGCACGGAAGC
GCTGCGACTTGTACACCTTCTGGATGTCAGCCCAGATCTTCAGGCGACGC
AGGAAGATGACAGCCTGCTTGGTCTTCTGGACCTTTTGCACCTCATCGGA
CACGACCAGCGGGAACTCGGAGACGCCGTCGATGACATGTCCCTTGGACT
GGACCAGAGCTGGCACTCCTGAGGCGGCGATGGCCGACACCAGGGCGTAG
CGACGCTGGTTGACATTCACCTTTGCGTGCCAGCGACGGAACGTCTTGGT
GGGGGCGAACATGCGTCCACCACGGCACATGTTGCCGAAGGCTCCCTGGC
CGGAA

BO10133.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5502-PA 1206 RpL4-RA 349..1203 873..19 4275 100 Minus
CG5502-PA 1206 RpL4-RA 267..345 955..877 395 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 363..1299 955..19 4640 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27924138..27924787 668..19 3250 100 Minus
3R 32079331 3R 27923452..27923743 955..664 1415 99 Minus
Blast to na_te.dros performed on 2015-02-03 15:12:45 has no hits.

BO10133.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:04 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-PA 269..1206 15..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:54 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5502-PA 269..1206 15..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:35 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 363..1309 8..955 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:23 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 363..1309 8..955 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:23 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27923452..27923740 667..955 99 -> Minus
3R 27924140..27924797 8..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:35 Download gff for BO10133.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23749174..23749462 667..955 99 -> Minus
arm_3R 23749862..23750519 8..666 99   Minus

BO10133.5prime Sequence

824 bp (804 high quality bases) assembled on 2006-04-19

> BO10133.5prime
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCT

BO10133.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5502-PA 1206 RpL4-RA 1..808 17..824 4040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 97..904 17..824 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27923369..27923743 200..574 1875 100 Plus
3R 32079331 3R 27924138..27924392 570..824 1275 100 Plus
3R 32079331 3R 27923124..27923307 19..202 920 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:05:23 has no hits.

BO10133.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:05 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:56 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5502-PA 1..808 17..824 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:01 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 87..904 7..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:06 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 87..904 7..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:06 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27923122..27923305 16..200 99 -> Plus
3R 27924140..27924392 572..824 100   Plus
3R 27923370..27923740 201..571 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:01 Download gff for BO10133.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23748844..23749027 16..200 99 -> Plus
arm_3R 23749092..23749462 201..571 100 -> Plus
arm_3R 23749862..23750114 572..824 100   Plus

BO10133.complete Sequence

1237 bp (1237 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631655

> BO10133.complete
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCAAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAGGTGTTGCGCGATCCCCGCAAGCGTG
TGTTCCGCAGCGTGCGCCGCCTGAACCCCCTGACCAACGTGCGCCAGCTG
ATCAAGCTTAACCCCTATGCCGAGGTCCTCAAGCGTCGTGCCGCCCTCGC
CGCCGAGAAGCGCACCGTGGCCAAGGTGCTGGCCAAGGCCAAGAAGCAGA
ACGTCGAGCTGGCCAAGTCGCACTTCGCCAATGTGGCCACCAAGGCTGCG
GCCAATCGCGCCAAGCTGCTGGCCGCCCGCAAGAAGAAGGTCGCCGCCAA
GAAGCCAGCGGCCAAGAAGGCAAGCTTTCTAGACCAT

BO10133.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1206 CG5502-PA 1..1203 17..1219 6015 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-RA 1400 CG5502-RA 97..1299 17..1219 6015 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27924138..27924787 570..1219 3250 100 Plus
3R 32079331 3R 27923369..27923743 200..574 1875 100 Plus
3R 32079331 3R 27923124..27923307 19..202 920 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:32:36 has no hits.

BO10133.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:45 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 1..1206 17..1223 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:34 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 115..1337 7..1230 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:39 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 97..1299 17..1221 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:45 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 115..1337 7..1230 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:41 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
RpL4-RA 97..1299 17..1221 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:41 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27923123..27923305 17..200 99 -> Plus
3R 27923370..27923740 201..571 100 -> Plus
3R 27924140..27924787 572..1221 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:39 Download gff for BO10133.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23748845..23749027 17..200 99 -> Plus
arm_3R 23749092..23749462 201..571 100 -> Plus
arm_3R 23749862..23750509 572..1221 99   Plus

BO10133.pep Sequence

Translation from 16 to 1237

> BO10133.pep
MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRN
NRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR
GGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGV
SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR
DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVG
RFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEE
IRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRT
VAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKKVAAKKPAAK
KASFLDH

BO10133.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
RpL4-PA 401 CG5502-PA 1..401 1..401 2035 100 Plus