Clone Sequence Records
BO10133.3prime Sequence
955 bp (835 high quality bases) assembled on 2006-04-19
> BO10133.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCCGCTGGCTTCTTGGCGGCGACCT
TCTTCTTGCGGGCGGCCAGCAGCTTGGCGCGATTGGCCGCAGCCTTGGTG
GCCACATTGGCGAAGTGCGACTTGGCCAGCTCGACGTTCTGCTTCTTGGC
CTTGGCCAGCACCTTGGCCACGGTGCGCTTCTCGGCGGCGAGGGCGGCAC
GACGCTTGAGGACCTCGGCATAGGGGTTAAGCTTGATCAGCTGGCGCACG
TTGGTCAGGGGGTTCAGGCGGCGCACGCTGCGGAACACACGCTTGCGGGG
ATCGCGCAACACCTTGCGGATCTCCTCAGACTTGAGCAGACGCGACAGAT
CGGTGTTGGCCATCTTGGGCTGGGGCAGGTTGTAGCCCTTCTTCAAGGTG
GACGGCTTCTTCCAGGTGCCGAACAGATCGTTCAGGCGGGCGAAAGCCGA
CTCGGTCCAGATGACAAAGCGACCGACATGACCGCCGGGGGCCAGCTTCA
GCAGATTGAGCTTGTCCACGTTGATGGTCTCAATGCCGGGGATGTTGCGG
AAGGCCTTGCGCAGACCCTCGTCCTTGTCGTAGACCACCAGGGGACCACG
GCGAGCGATGCGGCGACGGTCGCGCATGGTACCACGGCCAGCACGGAAGC
GCTGCGACTTGTACACCTTCTGGATGTCAGCCCAGATCTTCAGGCGACGC
AGGAAGATGACAGCCTGCTTGGTCTTCTGGACCTTTTGCACCTCATCGGA
CACGACCAGCGGGAACTCGGAGACGCCGTCGATGACATGTCCCTTGGACT
GGACCAGAGCTGGCACTCCTGAGGCGGCGATGGCCGACACCAGGGCGTAG
CGACGCTGGTTGACATTCACCTTTGCGTGCCAGCGACGGAACGTCTTGGT
GGGGGCGAACATGCGTCCACCACGGCACATGTTGCCGAAGGCTCCCTGGC
CGGAA
BO10133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5502-PA | 1206 | RpL4-RA | 349..1203 | 873..19 | 4275 | 100 | Minus |
CG5502-PA | 1206 | RpL4-RA | 267..345 | 955..877 | 395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 363..1299 | 955..19 | 4640 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27924138..27924787 | 668..19 | 3250 | 100 | Minus |
3R | 32079331 | 3R | 27923452..27923743 | 955..664 | 1415 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-03 15:12:45 has no hits.
BO10133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:04 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-PA | 269..1206 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:54 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5502-PA | 269..1206 | 15..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:35 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 363..1309 | 8..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:23 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 363..1309 | 8..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:23 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923452..27923740 | 667..955 | 99 | -> | Minus |
3R | 27924140..27924797 | 8..666 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:35 Download gff for
BO10133.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23749174..23749462 | 667..955 | 99 | -> | Minus |
arm_3R | 23749862..23750519 | 8..666 | 99 | | Minus |
BO10133.5prime Sequence
824 bp (804 high quality bases) assembled on 2006-04-19
> BO10133.5prime
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCT
BO10133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5502-PA | 1206 | RpL4-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 97..904 | 17..824 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27923369..27923743 | 200..574 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 27924138..27924392 | 570..824 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 27923124..27923307 | 19..202 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:23 has no hits.
BO10133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:05 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:56 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5502-PA | 1..808 | 17..824 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:01 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 87..904 | 7..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:06 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 87..904 | 7..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:06 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923122..27923305 | 16..200 | 99 | -> | Plus |
3R | 27924140..27924392 | 572..824 | 100 | | Plus |
3R | 27923370..27923740 | 201..571 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:01 Download gff for
BO10133.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23748844..23749027 | 16..200 | 99 | -> | Plus |
arm_3R | 23749092..23749462 | 201..571 | 100 | -> | Plus |
arm_3R | 23749862..23750114 | 572..824 | 100 | | Plus |
BO10133.complete Sequence
1237 bp (1237 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631655
> BO10133.complete
GAAGTTATCAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCG
TGTACACGGAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCG
GCAGTGTTCAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCA
GCTGCTCCGCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTG
GTCACCAGACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGT
ATTCCCCGTGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTT
CGGCAACATGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCC
GTCGCTGGCACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTG
TCGGCCATCGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACA
TGTCATCGACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGC
AAAAGGTCCAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAG
ATCTGGGCTGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGG
CCGTGGTACCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGG
TGGTCTACGACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCC
GGCATTGAGACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCC
CGGCGGTCATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCC
GCCTGAACGATCTGTTCGGCACCTGGAAGAAGCCGTCCACCTTGAAGAAG
GGCTACAACCTGCCCCAGCCCAAGATGGCCAACACCGATCTGTCGCGTCT
GCTCAAGTCTGAGGAGATCCGCAAGGTGTTGCGCGATCCCCGCAAGCGTG
TGTTCCGCAGCGTGCGCCGCCTGAACCCCCTGACCAACGTGCGCCAGCTG
ATCAAGCTTAACCCCTATGCCGAGGTCCTCAAGCGTCGTGCCGCCCTCGC
CGCCGAGAAGCGCACCGTGGCCAAGGTGCTGGCCAAGGCCAAGAAGCAGA
ACGTCGAGCTGGCCAAGTCGCACTTCGCCAATGTGGCCACCAAGGCTGCG
GCCAATCGCGCCAAGCTGCTGGCCGCCCGCAAGAAGAAGGTCGCCGCCAA
GAAGCCAGCGGCCAAGAAGGCAAGCTTTCTAGACCAT
BO10133.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1206 | CG5502-PA | 1..1203 | 17..1219 | 6015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-RA | 1400 | CG5502-RA | 97..1299 | 17..1219 | 6015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27924138..27924787 | 570..1219 | 3250 | 100 | Plus |
3R | 32079331 | 3R | 27923369..27923743 | 200..574 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 27923124..27923307 | 19..202 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:36 has no hits.
BO10133.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:45 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 1..1206 | 17..1223 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:34 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 115..1337 | 7..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:39 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 97..1299 | 17..1221 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:45 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 115..1337 | 7..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:41 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL4-RA | 97..1299 | 17..1221 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:41 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27923123..27923305 | 17..200 | 99 | -> | Plus |
3R | 27923370..27923740 | 201..571 | 100 | -> | Plus |
3R | 27924140..27924787 | 572..1221 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:39 Download gff for
BO10133.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 23748845..23749027 | 17..200 | 99 | -> | Plus |
arm_3R | 23749092..23749462 | 201..571 | 100 | -> | Plus |
arm_3R | 23749862..23750509 | 572..1221 | 99 | | Plus |
BO10133.pep Sequence
Translation from 16 to 1237
> BO10133.pep
MSLGNARPLVSVYTEKNEPAKDKNICLPAVFKAPIRPDVVNEVHQLLRRN
NRQAYAVSELAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCR
GGRMFAPTKTFRRWHRKVNVNQRRYALVSAIAASGVPALVQSKGHVIDGV
SEFPLVVSDEVQKVQKTKQAVIFLRRLKIWADIQKVYKSQRFRAGRGTMR
DRRRIARRGPLVVYDKDEGLRKAFRNIPGIETINVDKLNLLKLAPGGHVG
RFVIWTESAFARLNDLFGTWKKPSTLKKGYNLPQPKMANTDLSRLLKSEE
IRKVLRDPRKRVFRSVRRLNPLTNVRQLIKLNPYAEVLKRRAALAAEKRT
VAKVLAKAKKQNVELAKSHFANVATKAAANRAKLLAARKKKVAAKKPAAK
KASFLDH
BO10133.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL4-PA | 401 | CG5502-PA | 1..401 | 1..401 | 2035 | 100 | Plus |