Clone Sequence Records
BO10134.3prime Sequence
942 bp (843 high quality bases) assembled on 2006-04-19
> BO10134.3prime
ATGGTCTAGAAAGCTTGCGTCCCAGTATTTTATCTGGCCATCCCAGCCAG
CGGTGACCACTTTGCTGGCCTCATGCGGATGCCAGAGGGCACTGATGCAG
ACGCCGTCGTGCGCCTGCCACTTCTTGTACATCTTCGTCGTCTTCCAGTC
CCAAATATAACATTTGCCATCGCCATCGCCCGACACCAGATAGCTCATGT
CCGGCGAAAAGTCCAGCTGGCAGGCGTAGCCAGAGACCATGTGACCGGTG
AAGGTCTTTTTGCGGTTCATCTTGAAGCGATTGAGGGCGGAGAAGATGAC
GATCTTGTTGTCTAACGACTGGCAGGCCATCCATTTGCCATTGGGCGCCA
ATGTGACCGCCGGCATGGAATGCATAGTGGGGTCGGCAATGTACTTCATG
TCCACAGGAATGTCCCACTCCCATATGCGCATCGATTTGTCGTCCGAGGT
GGTCACAAACCGTCGGTTGTCGTCCACAAAGGTGATGGTGCTCACAGATC
CCAAGTGCCGGTCGTATTCCTGTACAATATCACCGCTGCGAGTGTCCCAA
CAAATGATCTTCTTGTCGGAGGTGCCGGCAACGAACAAATGTTGCTTGCT
ATTATCCGGATGGAATTTCACACAGAAAGGCATTTTACGCGTTGTGAATC
GGGACACTACATCGCCCGTTTCGGCATCCCACAACTTTATGTAGCGATCA
TACGAGGCAGACAGGAAGTTGGTACCCCTGTTGTTCCACGCAATATCCTT
GATGGCCTGCCGGTGACCGGAGAAGGTGCGTATGCAGCGTCGCTCGCCGT
AAACCTCCCACAGTTTGACGCGACAGTCCATCGATCCGGAGAGCAGAAGA
TGAGCGGTCTTGGGGAACCAGCGGATGGAGGAGATGCCCTTTGTGTGGCC
CGACAGGTGTGTATGTGCGCCTTGGGCAGAAAGCATTTGGTC
BO10134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6015-PA | 1731 | CG6015-RA | 843..1728 | 904..19 | 4380 | 99.7 | Minus |
| CG6015-PA | 1731 | CG6015-RA | 804..842 | 942..904 | 195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45099-RA | 2012 | CG45099-RA | 1009..1933 | 942..19 | 4570 | 99.7 | Minus |
| CG6015-RA | 2012 | CG6015-RA | 1009..1933 | 942..19 | 4570 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22032229..22032759 | 19..549 | 2655 | 100 | Plus |
| 3R | 32079331 | 3R | 22032820..22033213 | 550..942 | 1890 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-09 03:39:16 has no hits.
BO10134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:06 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-PA | 804..1731 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:57 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-PA | 804..1731 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:16:51 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 1009..1936 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:25:01 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 1009..1936 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:25:01 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22032226..22032759 | 15..549 | 99 | <- | Plus |
| 3R | 22032820..22033213 | 550..942 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:16:51 Download gff for
BO10134.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17857948..17858481 | 15..549 | 99 | <- | Plus |
| arm_3R | 17858542..17858935 | 550..942 | 99 | | Plus |
BO10134.5prime Sequence
960 bp (809 high quality bases) assembled on 2006-04-19
> BO10134.5prime
GAAGTTATCAGTCGACATGTTGGGCCTTCAGTCATACGCCAGTTCCTCGG
ATGAAGAATCGGACCATGCGGACGCCGCCACAGCCACCACGAATTCAGAG
CCCTCCGCTCCCATTCCGGATCACCTGCTGCCCGTGGACAAGACACACTC
GCTATCCAAGTCCATTGCTGTTTGTGCGGCGCCAACGGTGGTTCCCCTTG
GAGCATCGGCCGTGCCCCGAACTCTGGATCCCACGCTCAAGGAGGTAACC
TACAATCCGCGCTATGAGGAGATGTATGCTCCGGTAAAAGGTCCGGAGCA
TCCGGACCTCACCATGCAGCAGCGCGCTCCGCGGAACACCCTAGCCGGCT
ACGTAGAGAAGGCCCACATCAATGCCTTCGAATTTGAGAACCAGCGACGC
ACCTTTCACACCTACGGCTACGCATTGGACCCCAGCGTAGACGATCAGGC
GGACGGCCAGTCTTTTGTGGGTGACCTGCAGTCTGCGTACGATGACAATG
GCAAGACGGTATTTGAGCCGCCCAAGGCAAAGAAACTGCGCAAGCAGGAG
AAAAATGATAATCCCGAGGACATTGAGGGCTTTCTGGGTCCCTGGGGCAA
GTTCGAAAACGAGGTGTCGGTGGCAAAGCCAAATGAACAGGAGCGCGCCG
AACTGGACGAGCTGCTGTCTAAGCGACATAAGCGCGGACGCATTCCCGAG
GATAAGCCGCTCGAGGAGAAGTCGACGCTGCACATCAAGGATGCGTACGA
CTATCAGGGCCGCTCTTATTTGCATGCTCCTCATGATCTGGGCGTGAATC
TACGATCGAATGCACCACCGACCAAATGCTTTCTGCCCAAGGCGCACATA
CACACCTGGTCGGGCCACCACAAGGGCATCTCCTCCATCCGCTGGTTCCC
AAGACCGCTCATCTTCTGCTCTCCGGATCGATGGACTGTCGCGTCAAACT
GTGGGAGGTT
BO10134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6015-PA | 1731 | CG6015-RA | 1..884 | 17..900 | 4395 | 99.8 | Plus |
| CG6015-PA | 1731 | CG6015-RA | 883..945 | 898..960 | 315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45099-RA | 2012 | CG45099-RA | 206..1150 | 17..960 | 4685 | 99.8 | Plus |
| CG6015-RA | 2012 | CG6015-RA | 206..1150 | 17..960 | 4685 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22033364..22034081 | 734..17 | 3590 | 100 | Minus |
| 3R | 32079331 | 3R | 22033072..22033298 | 960..735 | 1070 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:22:12 has no hits.
BO10134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:07 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:41:58 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-PA | 1..945 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:58:16 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 201..1150 | 12..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:45:02 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 201..1150 | 12..960 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:45:02 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22033072..22033298 | 735..960 | 99 | <- | Minus |
| 3R | 22033364..22034086 | 12..734 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:58:16 Download gff for
BO10134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17858794..17859020 | 735..960 | 99 | <- | Minus |
| arm_3R | 17859086..17859808 | 12..734 | 99 | | Minus |
BO10134.complete Sequence
1762 bp (1762 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631656
> BO10134.complete
GAAGTTATCAGTCGACATGTTGGGCCTTCAGTCATACGCCAGTTCCTCGG
ATGAAGAATCGGACCATGCGGACGCCGCCACAGCCACCACGAATTCAGAG
CCCTCCGCTCCCATTCCGGATCACCTGCTGCCCGTGGACAAGACACACTC
GCTATCCAAGTCCATTGCTGTTTGTGCGGCGCCAACGGTGGTTCCCCTTG
GAGCATCGGCCGTGCCCCGAACTCTGGATCCCACGCTCAAGGAGGTAACC
TACAATCCGCGCTATGAGGAGATGTATGCTCCGGTAAAAGGTCCGGAGCA
TCCGGACCTCACCATGCAGCAGCGCGCTCCGCGGAACACCCTAGCCGGCT
ACGTAGAGAAGGCCCACATCAATGCCTTCGAATTTGAGAACCAGCGACGC
ACCTTTCACACCTACGGCTACGCATTGGACCCCAGCGTAGACGATCAGGC
GGACGGCCAGTCTTTTGTGGGTGACCTGCAGTCTGCGTACGATGACAATG
GCAAGACGGTATTTGAGCCGCCCAAGGCAAAGAAACTGCGCAAGCAGGAG
AAAAATGATAATCCCGAGGACATTGAGGGCTTTCTGGGTCCCTGGGGCAA
GTTCGAAAACGAGGTGTCGGTGGCAAAGCCAAATGAACAGGAGCGCGCCG
AACTGGACGAGCTGCTGTCTAAGCGACATAAGCGCGGACGCATTCCCGAG
GATAAGCCGCTCGAGGAGAAGTCGACGCTGCACATCAAGGATGCGTACGA
CTATCAGGGCCGCTCTTATTTGCATGCTCCTCATGATCTGGGCGTGAATC
TACGATCGAATGCACCACCGACCAAATGCTTTCTGCCCAAGGCGCACATA
CACACCTGGTCGGGCCACAACAAGGGCATCTCCTCCATCCGCTGGTTCCC
CAAGACCGCTCATCTTCTGCTCTCCGGATCGATGGACTGTCGCGTCAAAC
TGTGGGAGGTTTACGGCGAGCGACGCTGCATACGCACCTTCTCCGGTCAC
CGGCAGGCCATCAAGGATATTGCGTGGAACAACAGGGGTACCAACTTCCT
GTCTGCCTCGTATGATCGCTACATAAAGTTGTGGGATGCCGAAACGGGCG
ATGTAGTGTCCCGATTCACAACGCGTAAAATGCCTTTCTGTGTGAAATTC
CATCCGGATAATAGCAAGCAACATTTGTTCGTTGCCGGCACCTCCGACAA
GAAGATCATTTGTTGGGACACTCGCAGCGGTGATATTGTACAGGAATACG
ACCGGCACTTGGGATCTGTGAGCACCATCACCTTTGTGGACGACAACCGA
CGGTTTGTGACCACCTCGGACGACAAATCGATGCGCATATGGGAGTGGGA
CATTCCTGTGGACATGAAGTACATTGCCGACCCCACTATGCATTCCATGC
CGGCGGTCACATTGGCGCCCAATGGCAAATGGATGGCCTGCCAGTCGTTA
GACAACAAGATCGTCATCTTCTCCGCCCTCAATCGCTTCAAGATGAACCG
CAAAAAGACCTTCACCGGTCACATGGTCTCTGGCTACGCCTGCCAGCTGG
ACTTTTCGCCGGACATGAGCTATCTGGTGTCGGGCGATGGCGATGGCAAA
TGTTATATTTGGGACTGGAAGACGACGAAGATGTACAAGAAGTGGCAGGC
GCACGACGGCGTCTGCATCAGTGCCCTCTGGCATCCGCATGAGGCCAGCA
AAGTGGTCACCGCTGGCTGGGATGGCCAGATAAAATACTGGGACGCAAGC
TTTCTAGACCAT
BO10134.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6015-RA | 1731 | CG6015-PA | 1..1728 | 17..1744 | 8640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45099-RA | 2012 | CG45099-RA | 206..1933 | 17..1744 | 8640 | 100 | Plus |
| CG6015-RA | 2012 | CG6015-RA | 206..1933 | 17..1744 | 8640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:39:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22033364..22034081 | 734..17 | 3590 | 100 | Minus |
| 3R | 32079331 | 3R | 22032229..22032759 | 1744..1214 | 2655 | 100 | Minus |
| 3R | 32079331 | 3R | 22032820..22033298 | 1213..735 | 2395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:39:31 has no hits.
BO10134.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:35 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 1..1731 | 17..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:16 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 309..2044 | 12..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:47 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 211..1933 | 22..1746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:36 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 309..2044 | 12..1748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:52 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6015-RA | 211..1933 | 22..1746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:52 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22032227..22032759 | 1214..1746 | 99 | <- | Minus |
| 3R | 22032820..22033298 | 735..1213 | 100 | <- | Minus |
| 3R | 22033364..22034076 | 22..734 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:47 Download gff for
BO10134.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17857949..17858481 | 1214..1746 | 99 | <- | Minus |
| arm_3R | 17858542..17859020 | 735..1213 | 100 | <- | Minus |
| arm_3R | 17859086..17859798 | 22..734 | 100 | | Minus |
BO10134.pep Sequence
Translation from 16 to 1762
> BO10134.pep
MLGLQSYASSSDEESDHADAATATTNSEPSAPIPDHLLPVDKTHSLSKSI
AVCAAPTVVPLGASAVPRTLDPTLKEVTYNPRYEEMYAPVKGPEHPDLTM
QQRAPRNTLAGYVEKAHINAFEFENQRRTFHTYGYALDPSVDDQADGQSF
VGDLQSAYDDNGKTVFEPPKAKKLRKQEKNDNPEDIEGFLGPWGKFENEV
SVAKPNEQERAELDELLSKRHKRGRIPEDKPLEEKSTLHIKDAYDYQGRS
YLHAPHDLGVNLRSNAPPTKCFLPKAHIHTWSGHNKGISSIRWFPKTAHL
LLSGSMDCRVKLWEVYGERRCIRTFSGHRQAIKDIAWNNRGTNFLSASYD
RYIKLWDAETGDVVSRFTTRKMPFCVKFHPDNSKQHLFVAGTSDKKIICW
DTRSGDIVQEYDRHLGSVSTITFVDDNRRFVTTSDDKSMRIWEWDIPVDM
KYIADPTMHSMPAVTLAPNGKWMACQSLDNKIVIFSALNRFKMNRKKTFT
GHMVSGYACQLDFSPDMSYLVSGDGDGKCYIWDWKTTKMYKKWQAHDGVC
ISALWHPHEASKVVTAGWDGQIKYWDASFLDH
BO10134.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6015-PA | 576 | CG6015-PA | 1..576 | 1..576 | 3138 | 100 | Plus |
| wds-PB | 361 | CG17437-PB | 67..357 | 280..575 | 343 | 29.3 | Plus |
| wds-PA | 361 | CG17437-PA | 67..357 | 280..575 | 343 | 29.3 | Plus |
| CG10931-PA | 345 | CG10931-PA | 50..343 | 279..578 | 279 | 26.2 | Plus |
| CG3436-PC | 347 | CG3436-PC | 45..328 | 275..559 | 227 | 23.3 | Plus |
