Clone Sequence Records
BO10145.3prime Sequence
844 bp (841 high quality bases) assembled on 2006-04-19
> BO10145.3prime
ATGGTCTAGAAAGCTTGCCAATTTGTTTTCGCAAGGACATGATGCACTTT
CTCCTGATCCGGTGACAGCGGCATGGATCGCCTTGGCCACATATTCAACG
TTGCCCTTATTCAGGCCACTCATGCTGATGCGTCCCGTCTTCAGCAGGTA
AATGTGGTACTGGTCGATCAGCACACGAACATGGCTCTCGTTCAGACCGG
TGTAGGAGAACATGCCGATCTGGTTGACAATGTGATCCCAGGTGCCGGGG
GTGCCCAAGGCAACCAGCTTGTCCCGCAAAGCTGTACGCATCTCGCGGAT
GCGGCTCGACATTGCCTGGATGGAGGCCATCCACTCCTTGCGCAACTCCG
GTGTGTTTAGGACTTTGGAAACGATGCGAGCTCCATACGCGGGCGGATTC
GAGTACTGTCCACGAATGAGCAGCGTCAGCTGAGAGTGAACCGCTGCCTT
GGTAGCACCATTCTTTTGCACCACAGCCAGATTGCCGGTACGTTCGCAGT
AGAGGCCAAAGTTCTTGGCGAACGACTGGCAGATGAAGAGCTCGAAGCCA
CGCTGCACGAAGTACCTAGCGGCCCAGGCATCGCGATCGGGATCACCACT
GGCAAAGCCCTGGTAAGCCGAGTCGAACAGCGGGAACAACTTCTTCTTCT
CCATCAGATCGGCCAGCTCAGTCCACTGCTCCTGGGTGGGATCAATGCCG
GTGGGATTGTGGGCACAGGCGTGCAGAATGATCACAGCACCGGGCGGAGC
ATCGTTCAGATCGGCCAGCATGTTCTTGAAGTCCAACTCGCGTTTATTTT
GGTCCCAGTAGCGGTACGATTTAACGGTCGTAAAGCCGGCATCG
BO10145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8430-PB | 1314 | Got1-RB | 486..1311 | 844..19 | 4130 | 100 | Minus |
CG8430-PA | 1251 | Got1-RA | 423..1248 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 520..1345 | 844..19 | 4130 | 100 | Minus |
Got1-RB | 1682 | CG8430-RB | 519..1344 | 844..19 | 4130 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:30:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140765..16141590 | 844..19 | 4130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 09:30:59 has no hits.
BO10145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:17 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-PB | 486..1314 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:09 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8430-PA | 423..1251 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:18:52 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 519..1347 | 15..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:26 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 519..1347 | 15..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:26 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16140765..16141593 | 15..844 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:18:52 Download gff for
BO10145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12028270..12029098 | 15..844 | 99 | | Minus |
BO10145.5prime Sequence
921 bp (831 high quality bases) assembled on 2006-04-19
> BO10145.5prime
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCCGTTCCAAAGT
BO10145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8430-PB | 1314 | Got1-RB | 64..968 | 17..921 | 4475 | 99.7 | Plus |
CG8430-PA | 1251 | Got1-RA | 1..905 | 17..921 | 4475 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 98..1002 | 17..921 | 4495 | 99.8 | Plus |
Got1-RB | 1682 | CG8430-RB | 97..1001 | 17..921 | 4495 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140634..16141247 | 308..921 | 3040 | 99.7 | Plus |
2R | 25286936 | 2R | 16140329..16140438 | 125..234 | 550 | 100 | Plus |
2R | 25286936 | 2R | 16138776..16138884 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 16140499..16140574 | 233..308 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:20:30 has no hits.
BO10145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:18 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-PB | 58..968 | 12..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:11 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8430-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:14:15 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 91..1001 | 12..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:07 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 91..1001 | 12..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:07 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16138770..16138884 | 12..125 | 98 | -> | Plus |
2R | 16140330..16140437 | 126..233 | 100 | -> | Plus |
2R | 16140500..16140573 | 234..307 | 100 | -> | Plus |
2R | 16140634..16141247 | 308..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:14:15 Download gff for
BO10145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12026275..12026389 | 12..125 | 98 | -> | Plus |
arm_2R | 12027835..12027942 | 126..233 | 100 | -> | Plus |
arm_2R | 12028005..12028078 | 234..307 | 100 | -> | Plus |
arm_2R | 12028139..12028752 | 308..921 | 99 | | Plus |
BO10145.complete Sequence
1282 bp (1282 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631658
> BO10145.complete
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAGGAGT
GGATGGCCTCCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCGTACA
GCTTTGCGGGACAAGCTGGTTGCCTTGGGCACCCCCGGCACCTGGGATCA
CATTGTCAACCAGATCGGCATGTTCTCCTACACCGGTCTGAACGAGAGCC
ATGTTCGTGTGCTGATCGACCAGTACCACATTTACCTGCTGAAGACGGGA
CGCATCAGCATGAGTGGCCTGAATAAGGGCAACGTTGAATATGTGGCCAA
GGCGATCCATGCCGCTGTCACCGGATCAGGAGAAAGTGCATCATGTCCTT
GCGAAAACAAATTGGCAAGCTTTCTAGACCAT
BO10145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1251 | CG8430-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Got1-RB | 1314 | CG8430-PB | 64..1311 | 17..1264 | 6240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-RA | 1683 | CG8430-RA | 98..1345 | 17..1264 | 6240 | 100 | Plus |
Got1-RB | 1682 | CG8430-RB | 97..1344 | 17..1264 | 6240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16140634..16141590 | 308..1264 | 4785 | 100 | Plus |
2R | 25286936 | 2R | 16140329..16140438 | 125..234 | 550 | 100 | Plus |
2R | 25286936 | 2R | 16138776..16138884 | 17..125 | 545 | 100 | Plus |
2R | 25286936 | 2R | 16140499..16140574 | 233..308 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:40:07 has no hits.
BO10145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:33 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 1..1251 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:20 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 95..1351 | 12..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:53 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 97..1344 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:33 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RA | 95..1351 | 12..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:58 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Got1-RB | 97..1344 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:58 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16138776..16138884 | 17..125 | 100 | -> | Plus |
2R | 16140330..16140437 | 126..233 | 100 | -> | Plus |
2R | 16140500..16140573 | 234..307 | 100 | -> | Plus |
2R | 16140634..16141590 | 308..1266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:53 Download gff for
BO10145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12026281..12026389 | 17..125 | 100 | -> | Plus |
arm_2R | 12027835..12027942 | 126..233 | 100 | -> | Plus |
arm_2R | 12028005..12028078 | 234..307 | 100 | -> | Plus |
arm_2R | 12028139..12029095 | 308..1266 | 99 | | Plus |
BO10145.pep Sequence
Translation from 16 to 1282
> BO10145.pep
MSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPV
VRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFG
VQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKS
YRYWDQNKRELDFKNMLADLNDAPPGAVIILHACAHNPTGIDPTQEQWTE
LADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFICQSFA
KNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVS
KVLNTPELRKEWMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQI
GMFSYTGLNESHVRVLIDQYHIYLLKTGRISMSGLNKGNVEYVAKAIHAA
VTGSGESASCPCENKLASFLDH
BO10145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Got1-PA | 416 | CG8430-PA | 1..416 | 1..416 | 2185 | 100 | Plus |
Got1-PB | 437 | CG8430-PB | 22..437 | 1..416 | 2185 | 100 | Plus |
Got2-PA | 424 | CG4233-PA | 27..420 | 4..398 | 938 | 46.9 | Plus |
Got2-PB | 431 | CG4233-PB | 34..427 | 4..398 | 938 | 46.9 | Plus |