Clone BO10145 Report

Search the DGRC for BO10145

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptGot1-RA
Protein status:BO10145.pep: validated not full length
Sequenced Size:1282

Clone Sequence Records

BO10145.3prime Sequence

844 bp (841 high quality bases) assembled on 2006-04-19

> BO10145.3prime
ATGGTCTAGAAAGCTTGCCAATTTGTTTTCGCAAGGACATGATGCACTTT
CTCCTGATCCGGTGACAGCGGCATGGATCGCCTTGGCCACATATTCAACG
TTGCCCTTATTCAGGCCACTCATGCTGATGCGTCCCGTCTTCAGCAGGTA
AATGTGGTACTGGTCGATCAGCACACGAACATGGCTCTCGTTCAGACCGG
TGTAGGAGAACATGCCGATCTGGTTGACAATGTGATCCCAGGTGCCGGGG
GTGCCCAAGGCAACCAGCTTGTCCCGCAAAGCTGTACGCATCTCGCGGAT
GCGGCTCGACATTGCCTGGATGGAGGCCATCCACTCCTTGCGCAACTCCG
GTGTGTTTAGGACTTTGGAAACGATGCGAGCTCCATACGCGGGCGGATTC
GAGTACTGTCCACGAATGAGCAGCGTCAGCTGAGAGTGAACCGCTGCCTT
GGTAGCACCATTCTTTTGCACCACAGCCAGATTGCCGGTACGTTCGCAGT
AGAGGCCAAAGTTCTTGGCGAACGACTGGCAGATGAAGAGCTCGAAGCCA
CGCTGCACGAAGTACCTAGCGGCCCAGGCATCGCGATCGGGATCACCACT
GGCAAAGCCCTGGTAAGCCGAGTCGAACAGCGGGAACAACTTCTTCTTCT
CCATCAGATCGGCCAGCTCAGTCCACTGCTCCTGGGTGGGATCAATGCCG
GTGGGATTGTGGGCACAGGCGTGCAGAATGATCACAGCACCGGGCGGAGC
ATCGTTCAGATCGGCCAGCATGTTCTTGAAGTCCAACTCGCGTTTATTTT
GGTCCCAGTAGCGGTACGATTTAACGGTCGTAAAGCCGGCATCG

BO10145.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8430-PB 1314 Got1-RB 486..1311 844..19 4130 100 Minus
CG8430-PA 1251 Got1-RA 423..1248 844..19 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 520..1345 844..19 4130 100 Minus
Got1-RB 1682 CG8430-RB 519..1344 844..19 4130 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:30:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140765..16141590 844..19 4130 100 Minus
Blast to na_te.dros performed on 2015-02-01 09:30:59 has no hits.

BO10145.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:17 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-PB 486..1314 15..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:09 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8430-PA 423..1251 15..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:18:52 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 519..1347 15..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:26 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 519..1347 15..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:26 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16140765..16141593 15..844 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:18:52 Download gff for BO10145.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12028270..12029098 15..844 99   Minus

BO10145.5prime Sequence

921 bp (831 high quality bases) assembled on 2006-04-19

> BO10145.5prime
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCCGTTCCAAAGT

BO10145.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8430-PB 1314 Got1-RB 64..968 17..921 4475 99.7 Plus
CG8430-PA 1251 Got1-RA 1..905 17..921 4475 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 98..1002 17..921 4495 99.8 Plus
Got1-RB 1682 CG8430-RB 97..1001 17..921 4495 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140634..16141247 308..921 3040 99.7 Plus
2R 25286936 2R 16140329..16140438 125..234 550 100 Plus
2R 25286936 2R 16138776..16138884 17..125 545 100 Plus
2R 25286936 2R 16140499..16140574 233..308 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:20:30 has no hits.

BO10145.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:18 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-PB 58..968 12..921 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:11 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8430-PA 1..905 17..921 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:14:15 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 91..1001 12..921 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:07 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 91..1001 12..921 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:07 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16138770..16138884 12..125 98 -> Plus
2R 16140330..16140437 126..233 100 -> Plus
2R 16140500..16140573 234..307 100 -> Plus
2R 16140634..16141247 308..921 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:14:15 Download gff for BO10145.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12026275..12026389 12..125 98 -> Plus
arm_2R 12027835..12027942 126..233 100 -> Plus
arm_2R 12028005..12028078 234..307 100 -> Plus
arm_2R 12028139..12028752 308..921 99   Plus

BO10145.complete Sequence

1282 bp (1282 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631658

> BO10145.complete
GAAGTTATCAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCG
CCATCGAGGTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCC
AACAAGGTCAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCC
TTGGGTTTTGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATG
AGCAGGTTAACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACC
AATGCGGCCACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGA
GAATCGCGCCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCG
TTGCCGCCGATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTAC
TCGAACCCCACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTT
TACGACCGTTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGG
ACTTCAAGAACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTG
ATCATTCTGCACGCCTGTGCCCACAATCCCACCGGCATTGATCCCACCCA
GGAGCAGTGGACTGAGCTGGCCGATCTGATGGAGAAGAAGAAGTTGTTCC
CGCTGTTCGACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGC
GATGCCTGGGCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCAT
CTGCCAGTCGTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCA
ATCTGGCTGTGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCT
CAGCTGACGCTGCTCATTCGTGGACAGTACTCGAATCCGCCCGCGTATGG
AGCTCGCATCGTTTCCAAAGTCCTAAACACACCGGAGTTGCGCAAGGAGT
GGATGGCCTCCATCCAGGCAATGTCGAGCCGCATCCGCGAGATGCGTACA
GCTTTGCGGGACAAGCTGGTTGCCTTGGGCACCCCCGGCACCTGGGATCA
CATTGTCAACCAGATCGGCATGTTCTCCTACACCGGTCTGAACGAGAGCC
ATGTTCGTGTGCTGATCGACCAGTACCACATTTACCTGCTGAAGACGGGA
CGCATCAGCATGAGTGGCCTGAATAAGGGCAACGTTGAATATGTGGCCAA
GGCGATCCATGCCGCTGTCACCGGATCAGGAGAAAGTGCATCATGTCCTT
GCGAAAACAAATTGGCAAGCTTTCTAGACCAT

BO10145.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1251 CG8430-PA 1..1248 17..1264 6240 100 Plus
Got1-RB 1314 CG8430-PB 64..1311 17..1264 6240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-RA 1683 CG8430-RA 98..1345 17..1264 6240 100 Plus
Got1-RB 1682 CG8430-RB 97..1344 17..1264 6240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16140634..16141590 308..1264 4785 100 Plus
2R 25286936 2R 16140329..16140438 125..234 550 100 Plus
2R 25286936 2R 16138776..16138884 17..125 545 100 Plus
2R 25286936 2R 16140499..16140574 233..308 380 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:40:07 has no hits.

BO10145.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:33 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 1..1251 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:20 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 95..1351 12..1268 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:53 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 97..1344 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:33 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RA 95..1351 12..1268 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:58 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
Got1-RB 97..1344 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:58 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16138776..16138884 17..125 100 -> Plus
2R 16140330..16140437 126..233 100 -> Plus
2R 16140500..16140573 234..307 100 -> Plus
2R 16140634..16141590 308..1266 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:53 Download gff for BO10145.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12026281..12026389 17..125 100 -> Plus
arm_2R 12027835..12027942 126..233 100 -> Plus
arm_2R 12028005..12028078 234..307 100 -> Plus
arm_2R 12028139..12029095 308..1266 99   Plus

BO10145.pep Sequence

Translation from 16 to 1282

> BO10145.pep
MSIYADVPKGPAIEVFALTQAFKDDSNPNKVNLSVGAYRTDAGVPWVLPV
VRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGADSPAIKENRAFG
VQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKS
YRYWDQNKRELDFKNMLADLNDAPPGAVIILHACAHNPTGIDPTQEQWTE
LADLMEKKKLFPLFDSAYQGFASGDPDRDAWAARYFVQRGFELFICQSFA
KNFGLYCERTGNLAVVQKNGATKAAVHSQLTLLIRGQYSNPPAYGARIVS
KVLNTPELRKEWMASIQAMSSRIREMRTALRDKLVALGTPGTWDHIVNQI
GMFSYTGLNESHVRVLIDQYHIYLLKTGRISMSGLNKGNVEYVAKAIHAA
VTGSGESASCPCENKLASFLDH

BO10145.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:46
Subject Length Description Subject Range Query Range Score Percent Strand
Got1-PA 416 CG8430-PA 1..416 1..416 2185 100 Plus
Got1-PB 437 CG8430-PB 22..437 1..416 2185 100 Plus
Got2-PA 424 CG4233-PA 27..420 4..398 938 46.9 Plus
Got2-PB 431 CG4233-PB 34..427 4..398 938 46.9 Plus