Clone Sequence Records
BO10148.3prime Sequence
596 bp (595 high quality bases) assembled on 2006-04-19
> BO10148.3prime
ATGGTCTAGAAAGCTTGCGATATCTCCCGTTTCCATGGCTGCGTTTATGT
CCGCCACAATCTTTCCCATCACCTCGCGGTAGGGGGAATCTGGTCGGAAA
GCCGTCTCCAGCAGCGCCTCCTCGCCGAAGAAATCGAACACCTCGTCGAT
GCGGCCCAGCGACTTTTCTGTGAGATGCGGCTGCACAATCGACTTCAGCG
CCACTTGCGATTCGGCTATTGACTTTTGCAGGTACGGCAGGTCGAACGTG
AAGTCCACTTCGTAGAATGATATGATGGACAGCTGCGTGTTTTGAAACTT
TCTCTTAAAGAGCTCCGCCTTCTGCAGCTCCTCGTCGCTGAACTGATTGT
TCCGGTGGAGCACACCGATCTTGATCACAATCTTGATGATGTTCTTGATC
AGCTTCTCCGCCTTGGCCTTGTTCCCCGTGTGCATCTTGCAGAGCCTGTA
GAGGTTGTCCAGCAGCGACGCCGTCGTGCCATCGATGAAGGTCTTGGCGA
TGTTTTTTGTGGCCATGCGTGAGAGGATCTTCTTCTGCGCCCGCAGCCCG
ATATCGTGCGACTTGAAGACATTGTCCGCCATGTCGACTGATAACT
BO10148.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-PC | 633 | CG4091-RC | 66..630 | 583..19 | 2825 | 100 | Minus |
CG4091-PA | 567 | CG4091-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
CG4091-PB | 567 | CG4091-RB | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:34:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-RB | 1857 | CG4091-RB | 274..838 | 583..19 | 2825 | 100 | Minus |
CG4091-RC | 1950 | CG4091-RC | 367..931 | 583..19 | 2825 | 100 | Minus |
CG4091-RA | 1881 | CG4091-RA | 298..862 | 583..19 | 2825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23700298..23700589 | 292..583 | 1460 | 100 | Plus |
2R | 25286936 | 2R | 23699968..23700247 | 19..298 | 1370 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:34:23 has no hits.
BO10148.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:19 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-PC | 63..633 | 16..589 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:12 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-PC | 63..633 | 16..589 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:19:24 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 294..862 | 19..590 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:49 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 294..862 | 19..590 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:49 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23699968..23700240 | 19..291 | 100 | <- | Plus |
2R | 23700298..23700589 | 292..583 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:19:24 Download gff for
BO10148.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19587491..19587763 | 19..291 | 100 | <- | Plus |
arm_2R | 19587821..19588112 | 292..583 | 100 | | Plus |
BO10148.5prime Sequence
596 bp (595 high quality bases) assembled on 2006-04-19
> BO10148.5prime
GAAGTTATCAGTCGACATGGCGGACAATGTCTTCAAGTCGCACGATATCG
GGCTGCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATC
GCCAAGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTA
CAGGCTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGA
TCAAGAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAAC
AATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAA
GTTTCAAAACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCA
CGTTCGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCG
CTGAAGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCAT
CGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTT
TCCGACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGAC
ATAAACGCAGCCATGGAAACGGGAGATATCGCAAGCTTTCTAGACC
BO10148.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-PC | 633 | CG4091-RC | 66..630 | 16..580 | 2825 | 100 | Plus |
CG4091-PA | 567 | CG4091-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
CG4091-PB | 567 | CG4091-RB | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-RB | 1857 | CG4091-RB | 274..838 | 16..580 | 2825 | 100 | Plus |
CG4091-RC | 1950 | CG4091-RC | 367..931 | 16..580 | 2825 | 100 | Plus |
CG4091-RA | 1881 | CG4091-RA | 298..862 | 16..580 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23700298..23700589 | 307..16 | 1460 | 100 | Minus |
2R | 25286936 | 2R | 23699968..23700247 | 580..301 | 1370 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 09:29:17 has no hits.
BO10148.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:20 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-PC | 63..633 | 10..583 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:13 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-PC | 63..633 | 10..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:55:20 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 294..862 | 9..580 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:00:03 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 294..862 | 9..580 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:00:03 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23699968..23700240 | 308..580 | 100 | <- | Minus |
2R | 23700298..23700589 | 16..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:55:20 Download gff for
BO10148.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19587491..19587763 | 308..580 | 100 | <- | Minus |
arm_2R | 19587821..19588112 | 16..307 | 100 | | Minus |
BO10148.complete Sequence
598 bp (598 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631659
> BO10148.complete
GAAGTTATCAGTCGACATGGCGGACAATGTCTTCAAGTCGCACGATATCG
GGCTGCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATC
GCCAAGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTA
CAGGCTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGA
TCAAGAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAAC
AATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAA
GTTTCAAAACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCA
CGTTCGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCG
CTGAAGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCAT
CGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTT
TCCGACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGAC
ATAAACGCAGCCATGGAAACGGGAGATATCGCAAGCTTTCTAGACCAT
BO10148.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-RC | 633 | CG4091-PC | 66..630 | 16..580 | 2825 | 100 | Plus |
CG4091-RB | 567 | CG4091-PB | 1..564 | 17..580 | 2820 | 100 | Plus |
CG4091-RA | 567 | CG4091-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-RB | 1857 | CG4091-RB | 274..838 | 16..580 | 2825 | 100 | Plus |
CG4091-RC | 1950 | CG4091-RC | 367..931 | 16..580 | 2825 | 100 | Plus |
CG4091-RA | 1881 | CG4091-RA | 298..862 | 16..580 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23700298..23700589 | 307..16 | 1460 | 100 | Minus |
2R | 25286936 | 2R | 23699968..23700247 | 580..301 | 1370 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:18:36 has no hits.
BO10148.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:07 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RC | 63..633 | 10..583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:36 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RB | 148..712 | 16..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:50 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 299..862 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:07 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RB | 148..712 | 16..580 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:33 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4091-RA | 299..862 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:33 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23699965..23700240 | 308..582 | 99 | <- | Minus |
2R | 23700298..23700588 | 17..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:50 Download gff for
BO10148.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19587488..19587763 | 308..582 | 99 | <- | Minus |
arm_2R | 19587821..19588111 | 17..307 | 100 | | Minus |
BO10148.pep Sequence
Translation from 16 to 598
> BO10148.pep
MADNVFKSHDIGLRAQKKILSRMATKNIAKTFIDGTTASLLDNLYRLCKM
HTGNKAKAEKLIKNIIKIVIKIGVLHRNNQFSDEELQKAELFKRKFQNTQ
LSIISFYEVDFTFDLPYLQKSIAESQVALKSIVQPHLTEKSLGRIDEVFD
FFGEEALLETAFRPDSPYREVMGKIVADINAAMETGDIASFLDH
BO10148.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4091-PB | 188 | CG4091-PB | 1..188 | 1..188 | 942 | 100 | Plus |
CG4091-PA | 188 | CG4091-PA | 1..188 | 1..188 | 942 | 100 | Plus |
CG4091-PC | 210 | CG4091-PC | 23..210 | 1..188 | 942 | 100 | Plus |