Clone BO10148 Report

Search the DGRC for BO10148

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG4091-RA
Protein status:BO10148.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO10148.3prime Sequence

596 bp (595 high quality bases) assembled on 2006-04-19

> BO10148.3prime
ATGGTCTAGAAAGCTTGCGATATCTCCCGTTTCCATGGCTGCGTTTATGT
CCGCCACAATCTTTCCCATCACCTCGCGGTAGGGGGAATCTGGTCGGAAA
GCCGTCTCCAGCAGCGCCTCCTCGCCGAAGAAATCGAACACCTCGTCGAT
GCGGCCCAGCGACTTTTCTGTGAGATGCGGCTGCACAATCGACTTCAGCG
CCACTTGCGATTCGGCTATTGACTTTTGCAGGTACGGCAGGTCGAACGTG
AAGTCCACTTCGTAGAATGATATGATGGACAGCTGCGTGTTTTGAAACTT
TCTCTTAAAGAGCTCCGCCTTCTGCAGCTCCTCGTCGCTGAACTGATTGT
TCCGGTGGAGCACACCGATCTTGATCACAATCTTGATGATGTTCTTGATC
AGCTTCTCCGCCTTGGCCTTGTTCCCCGTGTGCATCTTGCAGAGCCTGTA
GAGGTTGTCCAGCAGCGACGCCGTCGTGCCATCGATGAAGGTCTTGGCGA
TGTTTTTTGTGGCCATGCGTGAGAGGATCTTCTTCTGCGCCCGCAGCCCG
ATATCGTGCGACTTGAAGACATTGTCCGCCATGTCGACTGATAACT

BO10148.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-PC 633 CG4091-RC 66..630 583..19 2825 100 Minus
CG4091-PA 567 CG4091-RA 1..564 582..19 2820 100 Minus
CG4091-PB 567 CG4091-RB 1..564 582..19 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-RB 1857 CG4091-RB 274..838 583..19 2825 100 Minus
CG4091-RC 1950 CG4091-RC 367..931 583..19 2825 100 Minus
CG4091-RA 1881 CG4091-RA 298..862 583..19 2825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23700298..23700589 292..583 1460 100 Plus
2R 25286936 2R 23699968..23700247 19..298 1370 99.3 Plus
Blast to na_te.dros performed on 2015-02-01 09:34:23 has no hits.

BO10148.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:19 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-PC 63..633 16..589 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:12 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-PC 63..633 16..589 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:19:24 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 294..862 19..590 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:49 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 294..862 19..590 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:49 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23699968..23700240 19..291 100 <- Plus
2R 23700298..23700589 292..583 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:19:24 Download gff for BO10148.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19587491..19587763 19..291 100 <- Plus
arm_2R 19587821..19588112 292..583 100   Plus

BO10148.5prime Sequence

596 bp (595 high quality bases) assembled on 2006-04-19

> BO10148.5prime
GAAGTTATCAGTCGACATGGCGGACAATGTCTTCAAGTCGCACGATATCG
GGCTGCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATC
GCCAAGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTA
CAGGCTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGA
TCAAGAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAAC
AATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAA
GTTTCAAAACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCA
CGTTCGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCG
CTGAAGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCAT
CGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTT
TCCGACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGAC
ATAAACGCAGCCATGGAAACGGGAGATATCGCAAGCTTTCTAGACC

BO10148.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-PC 633 CG4091-RC 66..630 16..580 2825 100 Plus
CG4091-PA 567 CG4091-RA 1..564 17..580 2820 100 Plus
CG4091-PB 567 CG4091-RB 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-RB 1857 CG4091-RB 274..838 16..580 2825 100 Plus
CG4091-RC 1950 CG4091-RC 367..931 16..580 2825 100 Plus
CG4091-RA 1881 CG4091-RA 298..862 16..580 2825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23700298..23700589 307..16 1460 100 Minus
2R 25286936 2R 23699968..23700247 580..301 1370 99.3 Minus
Blast to na_te.dros performed on 2015-02-13 09:29:17 has no hits.

BO10148.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:20 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-PC 63..633 10..583 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:13 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-PC 63..633 10..583 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 15:55:20 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 294..862 9..580 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:00:03 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 294..862 9..580 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:00:03 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23699968..23700240 308..580 100 <- Minus
2R 23700298..23700589 16..307 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 15:55:20 Download gff for BO10148.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19587491..19587763 308..580 100 <- Minus
arm_2R 19587821..19588112 16..307 100   Minus

BO10148.complete Sequence

598 bp (598 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631659

> BO10148.complete
GAAGTTATCAGTCGACATGGCGGACAATGTCTTCAAGTCGCACGATATCG
GGCTGCGGGCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATC
GCCAAGACCTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTA
CAGGCTCTGCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGA
TCAAGAACATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAAC
AATCAGTTCAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAA
GTTTCAAAACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCA
CGTTCGACCTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCG
CTGAAGTCGATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCAT
CGACGAGGTGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTT
TCCGACCAGATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGAC
ATAAACGCAGCCATGGAAACGGGAGATATCGCAAGCTTTCTAGACCAT

BO10148.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:18:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-RC 633 CG4091-PC 66..630 16..580 2825 100 Plus
CG4091-RB 567 CG4091-PB 1..564 17..580 2820 100 Plus
CG4091-RA 567 CG4091-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-RB 1857 CG4091-RB 274..838 16..580 2825 100 Plus
CG4091-RC 1950 CG4091-RC 367..931 16..580 2825 100 Plus
CG4091-RA 1881 CG4091-RA 298..862 16..580 2825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23700298..23700589 307..16 1460 100 Minus
2R 25286936 2R 23699968..23700247 580..301 1370 99.3 Minus
Blast to na_te.dros performed on 2014-11-28 01:18:36 has no hits.

BO10148.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:07 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RC 63..633 10..583 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:36 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RB 148..712 16..580 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:50 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 299..862 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:07 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RB 148..712 16..580 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:33 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
CG4091-RA 299..862 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:33 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23699965..23700240 308..582 99 <- Minus
2R 23700298..23700588 17..307 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:50 Download gff for BO10148.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19587488..19587763 308..582 99 <- Minus
arm_2R 19587821..19588111 17..307 100   Minus

BO10148.pep Sequence

Translation from 16 to 598

> BO10148.pep
MADNVFKSHDIGLRAQKKILSRMATKNIAKTFIDGTTASLLDNLYRLCKM
HTGNKAKAEKLIKNIIKIVIKIGVLHRNNQFSDEELQKAELFKRKFQNTQ
LSIISFYEVDFTFDLPYLQKSIAESQVALKSIVQPHLTEKSLGRIDEVFD
FFGEEALLETAFRPDSPYREVMGKIVADINAAMETGDIASFLDH

BO10148.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4091-PB 188 CG4091-PB 1..188 1..188 942 100 Plus
CG4091-PA 188 CG4091-PA 1..188 1..188 942 100 Plus
CG4091-PC 210 CG4091-PC 23..210 1..188 942 100 Plus