Clone Sequence Records
BO10149.3prime Sequence
959 bp (774 high quality bases) assembled on 2006-04-19
> BO10149.3prime
ATGGTCTAGAAAGCTTGCGCGTCCCTCAATGTATGTAGAGAGATCGATTT
CCTCGGGCAGCTCACTGATGTTCACATCGAAACGATCCTGTACTTCGTTA
AGTATCTTGGCGTCGTTCTCGTCCGAAACGAATGTGATTGCCAGTCCCTT
GGTGCCGAAGCGACCGGCACGGGCCACGCGATGCAAGTAGGTGTCGGAAT
CCTCGGGCATGTCGTAGTTGAACACGATGTTCACACGCTCGATGTCCATG
CCGCGGCCAAAGAGATTGGTGGCCACCAGAATGCGCTTCTGGAAGTCCTT
GAACTGCTGGTAGCGATTCAGACGCTCCTCCTGGGTCATCCCACGATGGA
TGCCGATGGCGGGGAAGTTCTGCTCCGTCAGCAGCTGCGACAGAGCCACG
CAACGTTGCACAGACTTCACAAAGATGACCACCTGATTGAACTCGAGCAC
GTCGAGCAGTTCGAACAGTTTCTTGTTCTTCTCGTTCTCCTTCAGATTGA
CGTAGTGCTGCTGCAGTCCGTGCAGCGTCAGCTTGGCCTCATCGTCGACG
TAGACCTCCATGGGATCTTGCATGAACTTTTTGCAAACGGGACGAATGTC
CTTGCTCAATGTGGCAGAGAACATCATCACTTGTTTGCCGTGCGGCGTGC
TACGGAAAATCTCTTGAACGTCACGACGCATATCCAGCTGCTCCAGCATC
TTGTCGCACTCGTCGAGCACAAAGTGCTTCAAAAGCTTCAGATTAAGTTT
CTTGTTGCGAATGAGGGCGAGAATTCGGCCAGGGGTGCCCACCACAATAT
GCGGGGTGCCGCTCTTGAGGGTCTCCTCGTCCTTTTTGATAGCCATTCCG
CCAAAGAAGACAGCCACCTTGACTGTGGGCATGTACTTGGAGAATCGCTC
ATACTCCTTGCTGATCTGGAAGGCCAGCTCGCGGGTGTGGACATGACCAG
GACGTGGCA
BO10149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7269-PC | 1275 | Hel25E-RC | 351..1272 | 940..19 | 4560 | 99.7 | Minus |
CG7269-PA | 1275 | Hel25E-RA | 351..1272 | 940..19 | 4560 | 99.7 | Minus |
CG7269-PB | 1275 | Hel25E-RB | 351..1272 | 940..19 | 4560 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 408..1349 | 959..19 | 4655 | 99.7 | Minus |
Hel25E-RA | 1596 | CG7269-RA | 518..1459 | 959..19 | 4655 | 99.7 | Minus |
Hel25E-RC | 1760 | CG7269-RC | 511..1452 | 959..19 | 4655 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:30:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5539707..5540111 | 30..434 | 2025 | 100 | Plus |
2L | 23513712 | 2L | 5541153..5541338 | 684..869 | 900 | 98.9 | Plus |
2L | 23513712 | 2L | 5540167..5540300 | 431..564 | 670 | 100 | Plus |
2L | 23513712 | 2L | 5540972..5541091 | 565..684 | 600 | 100 | Plus |
2L | 23513712 | 2L | 5541430..5541525 | 865..959 | 430 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:30:47 has no hits.
BO10149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:21 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 332..1275 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:15 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 332..1275 | 18..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:18:51 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 512..1459 | 12..958 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:24 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 512..1459 | 12..958 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:24 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5539702..5540109 | 25..432 | 99 | <- | Plus |
2L | 5540169..5540300 | 433..564 | 100 | <- | Plus |
2L | 5540972..5541090 | 565..683 | 100 | <- | Plus |
2L | 5541153..5541336 | 684..867 | 98 | <- | Plus |
2L | 5541433..5541524 | 868..958 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:18:51 Download gff for
BO10149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5541153..5541336 | 684..867 | 98 | <- | Plus |
arm_2L | 5541433..5541524 | 868..958 | 98 | | Plus |
arm_2L | 5539702..5540109 | 25..432 | 99 | <- | Plus |
arm_2L | 5540169..5540300 | 433..564 | 100 | <- | Plus |
arm_2L | 5540972..5541090 | 565..683 | 100 | <- | Plus |
BO10149.5prime Sequence
832 bp (817 high quality bases) assembled on 2006-04-19
> BO10149.5prime
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAAC
BO10149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7269-PC | 1275 | Hel25E-RC | 1..816 | 17..832 | 4080 | 100 | Plus |
CG7269-PA | 1275 | Hel25E-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG7269-PB | 1275 | Hel25E-RB | 1..816 | 17..832 | 4080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 78..893 | 17..832 | 4080 | 100 | Plus |
Hel25E-RA | 1596 | CG7269-RA | 188..1003 | 17..832 | 4080 | 100 | Plus |
Hel25E-RC | 1760 | CG7269-RC | 181..996 | 17..832 | 4080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5541430..5541657 | 442..215 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 5541723..5541921 | 215..17 | 995 | 100 | Minus |
2L | 23513712 | 2L | 5541153..5541338 | 623..438 | 930 | 100 | Minus |
2L | 23513712 | 2L | 5540972..5541091 | 742..623 | 600 | 100 | Minus |
2L | 23513712 | 2L | 5540211..5540300 | 832..743 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:30:17 has no hits.
BO10149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:22 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:17 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7269-PB | 1..816 | 17..832 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:49 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 178..996 | 14..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:45 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 178..996 | 14..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:45 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5540211..5540300 | 743..832 | 100 | <- | Minus |
2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
2L | 5541723..5541924 | 14..215 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:49 Download gff for
BO10149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5541723..5541924 | 14..215 | 99 | | Minus |
arm_2L | 5540211..5540300 | 743..832 | 100 | <- | Minus |
arm_2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
arm_2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
arm_2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
BO10149.complete Sequence
1306 bp (1306 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631660
> BO10149.complete
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAACAAGAAACTGTTCGAACTG
CTCGACGTGCTCGAGTTCAATCAGGTGGTCATCTTTGTGAAGTCTGTGCA
ACGTTGCGTGGCTCTGTCGCAGCTGCTGACGGAGCAGAACTTCCCCGCCA
TCGGCATCCATCGTGGGATGACCCAGGAGGAGCGTCTGAATCGCTACCAG
CAGTTCAAGGACTTCCAGAAGCGCATTCTGGTGGCCACCAATCTCTTTGG
CCGCGGCATGGACATCGAGCGTGTGAACATCGTGTTCAACTACGACATGC
CCGAGGATTCCGACACCTACTTGCATCGCGTGGCCCGTGCCGGTCGCTTC
GGCACCAAGGGACTGGCAATCACATTCGTTTCGGACGAGAACGACGCCAA
GATACTTAACGAAGTACAGGATCGTTTCGATGTGAACATCAGTGAGCTGC
CCGAGGAAATCGATCTCTCTACATACATTGAGGGACGCGCAAGCTTTCTA
GACCAT
BO10149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1275 | CG7269-PB | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Hel25E-RA | 1275 | CG7269-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Hel25E-RC | 1275 | CG7269-PC | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-RB | 1657 | CG7269-RB | 78..1349 | 17..1288 | 6360 | 100 | Plus |
Hel25E-RA | 1596 | CG7269-RA | 188..1459 | 17..1288 | 6360 | 100 | Plus |
Hel25E-RC | 1760 | CG7269-RC | 181..1452 | 17..1288 | 6360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5539707..5540111 | 1277..873 | 2025 | 100 | Minus |
2L | 23513712 | 2L | 5541430..5541657 | 442..215 | 1140 | 100 | Minus |
2L | 23513712 | 2L | 5541723..5541921 | 215..17 | 995 | 100 | Minus |
2L | 23513712 | 2L | 5541153..5541338 | 623..438 | 930 | 100 | Minus |
2L | 23513712 | 2L | 5540167..5540300 | 876..743 | 670 | 100 | Minus |
2L | 23513712 | 2L | 5540972..5541091 | 742..623 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:53:30 has no hits.
BO10149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:34 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 1..1275 | 17..1289 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:20 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 75..1356 | 14..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:00 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 181..1452 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:34 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RB | 75..1356 | 14..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:10 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hel25E-RC | 181..1452 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:10 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5539702..5540109 | 875..1282 | 99 | <- | Minus |
2L | 5540169..5540300 | 743..874 | 100 | <- | Minus |
2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
2L | 5541723..5541921 | 17..215 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:00 Download gff for
BO10149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5540169..5540300 | 743..874 | 100 | <- | Minus |
arm_2L | 5540972..5541090 | 624..742 | 100 | <- | Minus |
arm_2L | 5541153..5541336 | 440..623 | 100 | <- | Minus |
arm_2L | 5539702..5540109 | 875..1282 | 99 | <- | Minus |
arm_2L | 5541433..5541656 | 216..439 | 100 | <- | Minus |
arm_2L | 5541723..5541921 | 17..215 | 100 | | Minus |
BO10149.pep Sequence
Translation from 16 to 1306
> BO10149.pep
MADNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKP
EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL
QQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMA
IQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLE
QLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDD
EAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVAL
SQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDI
ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV
QDRFDVNISELPEEIDLSTYIEGRASFLDH
BO10149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hel25E-PB | 424 | CG7269-PB | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PA | 424 | CG7269-PA | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PC | 424 | CG7269-PC | 1..424 | 1..424 | 2189 | 100 | Plus |
Hel25E-PD | 305 | CG7269-PD | 1..242 | 1..242 | 1258 | 100 | Plus |
eIF-4a-PF | 403 | CG9075-PF | 17..399 | 27..415 | 691 | 38.7 | Plus |