Clone BO10149 Report

Search the DGRC for BO10149

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:49
Vector:pDNR-Dual
Associated Gene/TranscriptHel25E-RA
Protein status:BO10149.pep: validated full length
Sequenced Size:1306

Clone Sequence Records

BO10149.3prime Sequence

959 bp (774 high quality bases) assembled on 2006-04-19

> BO10149.3prime
ATGGTCTAGAAAGCTTGCGCGTCCCTCAATGTATGTAGAGAGATCGATTT
CCTCGGGCAGCTCACTGATGTTCACATCGAAACGATCCTGTACTTCGTTA
AGTATCTTGGCGTCGTTCTCGTCCGAAACGAATGTGATTGCCAGTCCCTT
GGTGCCGAAGCGACCGGCACGGGCCACGCGATGCAAGTAGGTGTCGGAAT
CCTCGGGCATGTCGTAGTTGAACACGATGTTCACACGCTCGATGTCCATG
CCGCGGCCAAAGAGATTGGTGGCCACCAGAATGCGCTTCTGGAAGTCCTT
GAACTGCTGGTAGCGATTCAGACGCTCCTCCTGGGTCATCCCACGATGGA
TGCCGATGGCGGGGAAGTTCTGCTCCGTCAGCAGCTGCGACAGAGCCACG
CAACGTTGCACAGACTTCACAAAGATGACCACCTGATTGAACTCGAGCAC
GTCGAGCAGTTCGAACAGTTTCTTGTTCTTCTCGTTCTCCTTCAGATTGA
CGTAGTGCTGCTGCAGTCCGTGCAGCGTCAGCTTGGCCTCATCGTCGACG
TAGACCTCCATGGGATCTTGCATGAACTTTTTGCAAACGGGACGAATGTC
CTTGCTCAATGTGGCAGAGAACATCATCACTTGTTTGCCGTGCGGCGTGC
TACGGAAAATCTCTTGAACGTCACGACGCATATCCAGCTGCTCCAGCATC
TTGTCGCACTCGTCGAGCACAAAGTGCTTCAAAAGCTTCAGATTAAGTTT
CTTGTTGCGAATGAGGGCGAGAATTCGGCCAGGGGTGCCCACCACAATAT
GCGGGGTGCCGCTCTTGAGGGTCTCCTCGTCCTTTTTGATAGCCATTCCG
CCAAAGAAGACAGCCACCTTGACTGTGGGCATGTACTTGGAGAATCGCTC
ATACTCCTTGCTGATCTGGAAGGCCAGCTCGCGGGTGTGGACATGACCAG
GACGTGGCA

BO10149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7269-PC 1275 Hel25E-RC 351..1272 940..19 4560 99.7 Minus
CG7269-PA 1275 Hel25E-RA 351..1272 940..19 4560 99.7 Minus
CG7269-PB 1275 Hel25E-RB 351..1272 940..19 4560 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 408..1349 959..19 4655 99.7 Minus
Hel25E-RA 1596 CG7269-RA 518..1459 959..19 4655 99.7 Minus
Hel25E-RC 1760 CG7269-RC 511..1452 959..19 4655 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:30:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5539707..5540111 30..434 2025 100 Plus
2L 23513712 2L 5541153..5541338 684..869 900 98.9 Plus
2L 23513712 2L 5540167..5540300 431..564 670 100 Plus
2L 23513712 2L 5540972..5541091 565..684 600 100 Plus
2L 23513712 2L 5541430..5541525 865..959 430 99 Plus
Blast to na_te.dros performed on 2015-02-01 09:30:47 has no hits.

BO10149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:21 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 332..1275 18..958 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:15 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 332..1275 18..958 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:18:51 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 512..1459 12..958 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 11:57:24 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 512..1459 12..958 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 11:57:24 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5539702..5540109 25..432 99 <- Plus
2L 5540169..5540300 433..564 100 <- Plus
2L 5540972..5541090 565..683 100 <- Plus
2L 5541153..5541336 684..867 98 <- Plus
2L 5541433..5541524 868..958 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:18:51 Download gff for BO10149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5541153..5541336 684..867 98 <- Plus
arm_2L 5541433..5541524 868..958 98   Plus
arm_2L 5539702..5540109 25..432 99 <- Plus
arm_2L 5540169..5540300 433..564 100 <- Plus
arm_2L 5540972..5541090 565..683 100 <- Plus

BO10149.5prime Sequence

832 bp (817 high quality bases) assembled on 2006-04-19

> BO10149.5prime
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAAC

BO10149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG7269-PC 1275 Hel25E-RC 1..816 17..832 4080 100 Plus
CG7269-PA 1275 Hel25E-RA 1..816 17..832 4080 100 Plus
CG7269-PB 1275 Hel25E-RB 1..816 17..832 4080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 78..893 17..832 4080 100 Plus
Hel25E-RA 1596 CG7269-RA 188..1003 17..832 4080 100 Plus
Hel25E-RC 1760 CG7269-RC 181..996 17..832 4080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5541430..5541657 442..215 1140 100 Minus
2L 23513712 2L 5541723..5541921 215..17 995 100 Minus
2L 23513712 2L 5541153..5541338 623..438 930 100 Minus
2L 23513712 2L 5540972..5541091 742..623 600 100 Minus
2L 23513712 2L 5540211..5540300 832..743 450 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:30:17 has no hits.

BO10149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:22 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:17 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7269-PB 1..816 17..832 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:49 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 178..996 14..832 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:45 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 178..996 14..832 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:45 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5540211..5540300 743..832 100 <- Minus
2L 5540972..5541090 624..742 100 <- Minus
2L 5541153..5541336 440..623 100 <- Minus
2L 5541433..5541656 216..439 100 <- Minus
2L 5541723..5541924 14..215 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:49 Download gff for BO10149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5541723..5541924 14..215 99   Minus
arm_2L 5540211..5540300 743..832 100 <- Minus
arm_2L 5540972..5541090 624..742 100 <- Minus
arm_2L 5541153..5541336 440..623 100 <- Minus
arm_2L 5541433..5541656 216..439 100 <- Minus

BO10149.complete Sequence

1306 bp (1306 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631660

> BO10149.complete
GAAGTTATCAGTCGACATGGCCGACAATGACGATCTTTTGGACTACGAGG
ATGAGGAGCAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAG
AAGGATGTCAAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGA
TTTCCTCCTGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCG
AGCATCCCTCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGC
ATGGACATCCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTT
CGTTCTGGCCACGCTGCAGCAGCTGGAGCCGTCGGACAACAACACCTGCC
ACGTCCTGGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAGCAAG
GAGTATGAGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTT
CTTTGGCGGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCA
CCCCGCATATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGC
AACAAGAAACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTG
CGACAAGATGCTGGAGCAGCTGGATATGCGTCGTGACGTTCAAGAGATTT
TCCGTAGCACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTG
AGCAAGGACATTCGTCCCGTTTGCAAAAAGTTCATGCAAGATCCCATGGA
GGTCTACGTCGACGATGAGGCCAAGCTGACGCTGCACGGACTGCAGCAGC
ACTACGTCAATCTGAAGGAGAACGAGAAGAACAAGAAACTGTTCGAACTG
CTCGACGTGCTCGAGTTCAATCAGGTGGTCATCTTTGTGAAGTCTGTGCA
ACGTTGCGTGGCTCTGTCGCAGCTGCTGACGGAGCAGAACTTCCCCGCCA
TCGGCATCCATCGTGGGATGACCCAGGAGGAGCGTCTGAATCGCTACCAG
CAGTTCAAGGACTTCCAGAAGCGCATTCTGGTGGCCACCAATCTCTTTGG
CCGCGGCATGGACATCGAGCGTGTGAACATCGTGTTCAACTACGACATGC
CCGAGGATTCCGACACCTACTTGCATCGCGTGGCCCGTGCCGGTCGCTTC
GGCACCAAGGGACTGGCAATCACATTCGTTTCGGACGAGAACGACGCCAA
GATACTTAACGAAGTACAGGATCGTTTCGATGTGAACATCAGTGAGCTGC
CCGAGGAAATCGATCTCTCTACATACATTGAGGGACGCGCAAGCTTTCTA
GACCAT

BO10149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1275 CG7269-PB 1..1272 17..1288 6360 100 Plus
Hel25E-RA 1275 CG7269-PA 1..1272 17..1288 6360 100 Plus
Hel25E-RC 1275 CG7269-PC 1..1272 17..1288 6360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-RB 1657 CG7269-RB 78..1349 17..1288 6360 100 Plus
Hel25E-RA 1596 CG7269-RA 188..1459 17..1288 6360 100 Plus
Hel25E-RC 1760 CG7269-RC 181..1452 17..1288 6360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5539707..5540111 1277..873 2025 100 Minus
2L 23513712 2L 5541430..5541657 442..215 1140 100 Minus
2L 23513712 2L 5541723..5541921 215..17 995 100 Minus
2L 23513712 2L 5541153..5541338 623..438 930 100 Minus
2L 23513712 2L 5540167..5540300 876..743 670 100 Minus
2L 23513712 2L 5540972..5541091 742..623 600 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:53:30 has no hits.

BO10149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:34 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 1..1275 17..1289 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:20 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 75..1356 14..1295 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:40:00 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 181..1452 17..1290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:34 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RB 75..1356 14..1295 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:45:10 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
Hel25E-RC 181..1452 17..1290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:45:10 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5539702..5540109 875..1282 99 <- Minus
2L 5540169..5540300 743..874 100 <- Minus
2L 5540972..5541090 624..742 100 <- Minus
2L 5541153..5541336 440..623 100 <- Minus
2L 5541433..5541656 216..439 100 <- Minus
2L 5541723..5541921 17..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:40:00 Download gff for BO10149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5540169..5540300 743..874 100 <- Minus
arm_2L 5540972..5541090 624..742 100 <- Minus
arm_2L 5541153..5541336 440..623 100 <- Minus
arm_2L 5539702..5540109 875..1282 99 <- Minus
arm_2L 5541433..5541656 216..439 100 <- Minus
arm_2L 5541723..5541921 17..215 100   Minus

BO10149.pep Sequence

Translation from 16 to 1306

> BO10149.pep
MADNDDLLDYEDEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKP
EILRAIVDCGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATL
QQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMA
IQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLE
QLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDD
EAKLTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVAL
SQLLTEQNFPAIGIHRGMTQEERLNRYQQFKDFQKRILVATNLFGRGMDI
ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEV
QDRFDVNISELPEEIDLSTYIEGRASFLDH

BO10149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Hel25E-PB 424 CG7269-PB 1..424 1..424 2189 100 Plus
Hel25E-PA 424 CG7269-PA 1..424 1..424 2189 100 Plus
Hel25E-PC 424 CG7269-PC 1..424 1..424 2189 100 Plus
Hel25E-PD 305 CG7269-PD 1..242 1..242 1258 100 Plus
eIF-4a-PF 403 CG9075-PF 17..399 27..415 691 38.7 Plus