Clone Sequence Records
BO10154.3prime Sequence
835 bp (808 high quality bases) assembled on 2006-04-19
> BO10154.3prime
ATGGTCTAGAAAGCTTGCGTTGGCGGGCTCGGTGACGCGGTGCACCTGAA
GCACGGCCACAGCCTCCTCCACCTTGGCCTTAAGGGCCTCCTGATCCTCG
ATCATGTGCAAGAGCTCAGAGTTTTCGATCTCCAACAACATGCCGGTGAT
CTTACCAGCCAAATTGGCGTGCATATGCTCAATCATCGGATACAGACGCT
CGCCCAGGATCTGTTTCTGCTCCTGCGGCTTGGCGTTGGCCAGCAACGAG
GCAATGAGCTTCTCAGAATTCTTTCCTTGCAATTGCTGTGGAATTGGCTG
GGTCTGATGCAACTGTGGCACTGGAGGATTGCGCATGTTTGAGGTGTACT
TATAGTTGGAAGTACGCTGCTGGGCACCGCCAGCGATTTGGGCTCCGGGG
ATCTGCATGTTGGGTGCTGCAGTTTGCTGGCCAGTAATAGCGCGTGCTCC
AGTGTTGCGCATGTTGTTAGCCGCAGCAGCGGCGGCATGTGTGCCCTGCA
CCTGAGGCTGTGCCCCGCGAGCGCCAGCAGCAGCCGAACGGAACTGAGTG
GGCACCGCACCGGCTGTGCCCTGGAAGCCACCAGCAGCGGCAGCTCCGGC
CTGGACACCCTGTATGGCTGCTGGGGGACGCACCTGGGGCACCCAGCGGG
GTGTGTTTCTCATCTGAGTGGCCACCTGGGAACCGAAGAAACGCTGATTT
GACGGAAGGGTCGGCACAAAGAAGCCGCTAGCCGCGTTGGGCTGGTAGAT
CTGTCCCAGCTGCTGCATACGCATGCCGGTCATGTGACGCATGTACTGCG
AGGCGAGATGAGCCTTGCGCTCCTCCTTCCTTTGG
BO10154.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5119-PE | 1905 | pAbp-RE | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PA | 1905 | pAbp-RA | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PF | 1905 | pAbp-RF | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PB | 1905 | pAbp-RB | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PD | 1905 | pAbp-RD | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PG | 1905 | pAbp-RG | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PH | 1905 | pAbp-RH | 1086..1902 | 835..19 | 4085 | 100 | Minus |
| CG5119-PC | 1905 | pAbp-RC | 1086..1902 | 835..19 | 4085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 1283..2099 | 835..19 | 4085 | 100 | Minus |
| pAbp-RB | 3870 | CG5119-RB | 1147..1963 | 835..19 | 4085 | 100 | Minus |
| pAbp-RC | 3127 | CG5119-RC | 1360..2176 | 835..19 | 4085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18144332..18144897 | 835..270 | 2830 | 100 | Minus |
| 2R | 25286936 | 2R | 18144967..18145217 | 269..19 | 1255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:37:04 has no hits.
BO10154.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:30 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-PA | 1086..1905 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:27 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5119-PC | 1086..1905 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:45:20 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 1360..2182 | 12..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:59:52 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 1360..2182 | 12..835 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:59:52 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18144332..18144897 | 270..835 | 100 | -> | Minus |
| 2R | 18144967..18145223 | 12..269 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:45:20 Download gff for
BO10154.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14031837..14032402 | 270..835 | 100 | -> | Minus |
| arm_2R | 14032472..14032728 | 12..269 | 99 | | Minus |
BO10154.5prime Sequence
799 bp (796 high quality bases) assembled on 2006-04-19
> BO10154.5prime
GAAGTTATCAGTCGACATGGCTTCTCTTTACGTCGGTGATCTCCCACAGG
ACGTCAACGAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTG
CTGTCCATTCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTA
TGCCTACGTCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACA
CCATGAACTTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCT
CAGCGTGATCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAA
GAACTTAGATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCG
CCTTCGGCAACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAAC
TCAAAGGGCTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACAC
GTCCATCGACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACG
TGGGTAAGTTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAG
GCTAAGCTCTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGA
CGATGAAAAACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCT
ACAAGGTCATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTT
GCATTCGAGACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGG
CAAGGACATGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAG
BO10154.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5119-PE | 1905 | pAbp-RE | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PA | 1905 | pAbp-RA | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PF | 1905 | pAbp-RF | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PB | 1905 | pAbp-RB | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PD | 1905 | pAbp-RD | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PG | 1905 | pAbp-RG | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PH | 1905 | pAbp-RH | 1..783 | 17..799 | 3890 | 99.8 | Plus |
| CG5119-PC | 1905 | pAbp-RC | 1..783 | 17..799 | 3890 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..980 | 17..799 | 3900 | 99.9 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..844 | 17..799 | 3900 | 99.9 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..1057 | 17..799 | 3900 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144029 | 182..799 | 3090 | 100 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 17..187 | 825 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 475..296 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:53:46 has no hits.
BO10154.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:31 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-PA | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:29 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5119-PC | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:56:31 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1057 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:32:22 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..1057 | 17..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:32:22 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 17..182 | 99 | -> | Plus |
| 2R | 18143413..18144029 | 183..799 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:56:31 Download gff for
BO10154.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 17..182 | 99 | -> | Plus |
| arm_2R | 14030918..14031534 | 183..799 | 100 | | Plus |
BO10154.complete Sequence
1936 bp assembled on 2008-08-14
GenBank Submission: FJ631662
> BO10154.complete
GAAGTTATCAGTCGACATGGCTTCTCTTTACGTCGGTGATCTCCCACAGG
ACGTCAACGAATCGGGACTTTTTGACAAGTTCTCGTCTGCTGGTCCAGTG
CTGTCCATTCGTGTCTGCCGCGATGTGATTACCCGTCGCTCGTTGGGCTA
TGCCTACGTCAACTTCCAGCAGCCAGCCGATGCTGAGCGTGCTTTGGACA
CCATGAACTTTGACCTGGTTCGCAACAAGCCCATTCGCATTATGTGGTCT
CAGCGTGATCCTTCTCTTCGTCGCTCAGGTGTGGGCAACGTGTTCATCAA
GAACTTAGATAGGGCCATCGACAACAAGGCAATCTACGACACTTTCTCCG
CCTTCGGCAACATTTTAAGCTGCAAGGTAGCCACCGATGAAAAGGGCAAC
TCAAAGGGCTATGGATTCGTCCACTTCGAGACCGAGGAGGCCGCAAACAC
GTCCATCGACAAAGTCAATGGCATGTTGCTCAACGGCAAGAAGGTCTACG
TGGGTAAGTTCATCCCGCGCAAGGAGCGCGAGAAGGAGCTGGGCGAGAAG
GCTAAGCTCTTCACCAATGTATATGTGAAGAACTTCACTGAGGATTTCGA
CGATGAAAAACTGAAGGAATTCTTTGAGCCCTACGGCAAGATAACCAGCT
ACAAGGTCATGTCCAAGGAGGATGGCAAGAGCAAGGGCTTCGGATTCGTT
GCATTCGAGACAACAGAGGCTGCTGAGGCGGCCGTTCAGGCTCTCAATGG
CAAGGACATGGGAGAGGGCAAGTCCCTGTACGTGGCTCGTGCCCAGAAGA
AGGCCGAACGCCAGCAGGAGCTGAAGCGCAAGTTCGAGGAACTGAAGCAG
AAGCGTCACGAGTCTGTGTTCGGCGTTAACTTGTACGTTAAGAACCTGGA
CGACACAATCGATGACGATCGTCTGCGCATCGCGTTCTCTCCATACGGCA
ACATCACATCGGCCAAGGTCATGACCGATGAGGAGGGTCGCTCCAAGGGA
TTCGGCTTCGTGTGCTTCAATGCCGCAAGCGAGGCTACCTGCGCCGTCAC
CGAGCTGAACGGTCGCGTCGTCGGCAGTAAGCCGTTGTACGTTGCTTTGG
CCCAAAGGAAGGAGGAGCGCAAGGCTCATCTCGCCTCGCAGTACATGCGT
CACATGACCGGCATGCGTATGCAGCAGCTGGGACAGATCTACCAGCCCAA
CGCGGCTAGCGGCTTCTTTGTGCCGACCCTTCCGTCAAATCAGCGTTTCT
TCGGTTCCCAGGTGGCCACTCAGATGAGAAACACACCCCGCTGGGTGCCC
CAGGTGCGTCCCCCAGCAGCCATACAGGGTGTCCAGGCCGGAGCTGCCGC
TGCTGGTGGCTTCCAGGGCACAGCCGGTGCGGTGCCCACTCAGTTCCGTT
CGGCTGCTGCTGGCGCTCGCGGGGCACAGCCTCAGGTGCAGGGCACACAT
GCCGCCGCTGCTGCGGCTAACAACATGCGCAACACTGGAGCACGCGCTAT
TACTGGCCAGCAAACTGCAGCACCCAACATGCAGATCCCCGGAGCCCAAA
TCGCTGGCGGTGCCCAGCAGCGTACTTCCAACTATAAGTACACCTCAAAC
ATGCGCAATCCTCCAGTGCCACAGTTGCATCAGACCCAGCCAATTCCACA
GCAATTGCAAGGAAAGAATTCTGAGAAGCTCATTGCCTCGTTGCTGGCCA
ACGCCAAGCCGCAGGAGCAGAAACAGATCCTGGGCGAGCGTCTGTATCCG
ATGATTGAGCATATGCACGCCAATTTGGCTGGTAAGATCACCGGCATGTT
GTTGGAGATCGAAAACTCTGAGCTCTTGCACATGATCGAGGATCAGGAGG
CCCTTAAGGCCAAGGTGGAGGAGGCTGTGGCCGTGCTTCAGGTGCACCGC
GTCACCGAGCCCGCCAACGCAAGCTTTCTAGACCAT
BO10154.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 1905 | CG5119-PA | 1..1902 | 17..1918 | 9495 | 99.9 | Plus |
| pAbp-RB | 1905 | CG5119-PB | 1..1902 | 17..1918 | 9495 | 99.9 | Plus |
| pAbp-RC | 1905 | CG5119-PC | 1..1902 | 17..1918 | 9495 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:42:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-RA | 2433 | CG5119-RA | 198..2099 | 17..1918 | 9495 | 99.9 | Plus |
| pAbp-RB | 3870 | CG5119-RB | 62..1963 | 17..1918 | 9495 | 99.9 | Plus |
| pAbp-RC | 3127 | CG5119-RC | 275..2176 | 17..1918 | 9495 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18143412..18144897 | 182..1667 | 7430 | 100 | Plus |
| 2R | 25286936 | 2R | 18144967..18145217 | 1668..1918 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 18141507..18141677 | 17..187 | 825 | 98.8 | Plus |
| 2R | 25286936 | 2R | 24524945..24525124 | 475..296 | 225 | 75 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:42:57 has no hits.
BO10154.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:40:12 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RF | 238..2145 | 17..1925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:19 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..2176 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:04:08 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RF | 238..2139 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:41 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pAbp-RC | 275..2176 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:41 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18141507..18141672 | 17..182 | 99 | -> | Plus |
| 2R | 18143413..18144897 | 183..1667 | 100 | -> | Plus |
| 2R | 18144967..18145217 | 1668..1920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:19 Download gff for
BO10154.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14029012..14029177 | 17..182 | 99 | -> | Plus |
| arm_2R | 14030918..14032402 | 183..1667 | 100 | -> | Plus |
| arm_2R | 14032472..14032722 | 1668..1920 | 99 | | Plus |
BO10154.pep Sequence
Translation from 16 to 1936
> BO10154.pep
MASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNF
QQPADAERALDTMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRA
IDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV
NGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLK
EFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGE
GKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDD
DRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGR
VVGSKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGF
FVPTLPSNQRFFGSQVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQ
GTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQQT
AAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPPVPQLHQTQPIPQQLQGK
NSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIEN
SELLHMIEDQEALKAKVEEAVAVLQVHRVTEPANASFLDH
BO10154.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pAbp-PA | 634 | CG5119-PA | 1..634 | 1..634 | 3245 | 100 | Plus |
| pAbp-PB | 634 | CG5119-PB | 1..634 | 1..634 | 3245 | 100 | Plus |
| pAbp-PC | 634 | CG5119-PC | 1..634 | 1..634 | 3245 | 100 | Plus |
| CG4612-PC | 307 | CG4612-PC | 113..305 | 90..285 | 628 | 60.2 | Plus |
| CG4612-PA | 307 | CG4612-PA | 113..305 | 90..285 | 628 | 60.2 | Plus |
| CG4612-PC | 307 | CG4612-PC | 115..305 | 185..392 | 328 | 36.8 | Plus |
| CG4612-PC | 307 | CG4612-PC | 115..292 | 4..178 | 206 | 26.8 | Plus |
