Clone Sequence Records
BO10161.3prime Sequence
911 bp (853 high quality bases) assembled on 2006-04-19
> BO10161.3prime
ATGGTCTAGAAAGCTTGCCTGGCGACGCATGCGCTCGATGGGCTCCCTGG
GCCGGATGCGGTAGCGCTTCGAGGAGCTGGACGGCGACAGCGGGCTACAG
TACTGGCTGTCCAGCGTCTGAGTGCGCTTTCTCTTGAGGCACTGCTGGTC
CTCCATGGAGGAGTCCCTTGCACTGGGGCGCACCAGGGATCCAGCGATGG
AGGCGCAGCGACGGATGAGTGAGCCCGAACCAGCGTTCTCCTTATCCGAA
TCCCTGTCCCTGTCCCTGTCCTTTTCGCGTTCGCCGCGCAAGCTGGCCGG
CAGTCGCATCATGGAACTCATCAGCGACCACAGGCGACCGGAGTTGGGCG
CCTCCAGCTTTTTGTCGTTGCACGTGGAGGCGTTTGTGGGGCGGAACACC
TCGTCCTCCTCTTCTGCGTCCACGACCTCCGGCTCGCCCACATCCTGCAC
GCCGCTATAGACCCTCTGCTGACGGCATTCCCGCAACGGAGGACGCACCC
TGGGTTGCTGCAATGGCGGCGAGATCAGGGCCATCACCGCCAGCCCCTTC
TCCTTCGGCTTATCCTTCTTGGGCGAAAACTCGCCGCTCAGCTGGCGCGG
CACAATCGCCTGGCGATGACGACGCTCTGGAATTTCCGGCGTTCCCGGTT
CCGGCGTGAAAAACTGGTCCTTGGTTTCATCGCCCTCGCCATTCGATCGC
ATCTGTTGGCTGCTCTTGGGCGGCGTCTCGAACTTGATCTGCTTCTTGTT
GATGCCGGCACCGGTGACACGGATGGGCGTTATGGCCGGCACGTGGCACA
CTTCCGCTGATTCCGAGGTGGAGCGTATGATCTCGACGCTCTCGCATGAG
TTGTACACCGTGGAAGAGGTCTTCTGTGAGCTGGAGTTCGTCCGCGTGAT
GATGATCGACT
BO10161.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2707-PA | 2091 | fs(1)Ya-RA | 1196..2088 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:35:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 1254..2146 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:35:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2725596..2726488 | 911..19 | 4465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:35:44 has no hits.
BO10161.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:41 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1196..2091 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:43 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1196..2091 | 18..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:17 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1254..2153 | 10..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:53:28 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1254..2153 | 10..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:53:28 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2725596..2726495 | 10..911 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:17 Download gff for
BO10161.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2619629..2620528 | 10..911 | 99 | | Minus |
BO10161.5prime Sequence
882 bp (808 high quality bases) assembled on 2006-04-19
> BO10161.5prime
GAAGTTATCAGTCGACATGTCGTTTTCCAATGTCCTAATCATGCGACAGC
CCGACGAGGGCAAGTGCCACATTTGCAAGCGTGTCTTCTGTTGCGGCAAA
TGCCGCCAGAAGCATCAGTTCAAAGCGCACGCCATTGCTGTGCGCGAGCC
ATTGGGATTGAGGTCTGCCGGCGGCGGTATCATCGAGCATCGCCATCAAA
TGGAGTCCGGCGCGACCACCATCTATGTGTTCTGTCCGATCTGCGAGCGG
CGTCCCCTGCTGCTGCGCGAGGAGATGCACGGCGAGCTGCTGGCCCACAT
CGAGACCTGCCACCTGCCGCTGCGATGCCGCAAGTGCCAGCGCAACTACA
CGCGCGTCGATGACCTGCGGGAGTTCAGCAAGTGCGTGGACCAGCAGCAG
AGCTGCACTGATGTCACCGGCGCCACGGAGACATCGAAGGCGACGCTAAA
GAAGGCAGCGAATAGCACCGCCATTTCAACGCAAACGTCGCCGTCCGTAA
CGCCCATTTCACTGATCAACATGCGCTGGAAGGCCAAGAGCCGTGTCACC
CACGAGGAGTTCATCAGCGACAGCGTCTCCTCCATACGCAACCTGTCGTC
GTTCAGCAACAGCTCCATTCGTCGCTCCATTGGCCAACTGGGCGTGAATC
CGTCCGAAACGATGGAGAAGGGCAAGGTCATACGCTCGACGTCCACACCA
CTGCACGTGGAGTCCGTGTTCGCCAAGCCCAAGGAGCCGATTACCTTCAA
TGCTTCCACTGGCGGCCACGTGTCCAGCATCTACCACGAGGAGCCCAGTC
CGACACCCGAAAGCAATCCCGTCCAGCAGCAGCAGCAGCAGCAGCAGCCG
TTGCAGCAGCGCGCCTGGAAAATGGGCGCCCG
BO10161.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2707-PA | 2091 | fs(1)Ya-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 59..924 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2724441..2725266 | 57..882 | 4130 | 100 | Plus |
| X | 23542271 | X | 2724344..2724386 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:04:07 has no hits.
BO10161.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:42 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:44 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2707-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:07 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..924 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:45 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..924 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:45 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2724338..2724385 | 9..58 | 92 | -> | Plus |
| X | 2724443..2725266 | 59..882 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:07 Download gff for
BO10161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2618371..2618418 | 9..58 | 92 | -> | Plus |
| arm_X | 2618476..2619299 | 59..882 | 100 | | Plus |
BO10161.complete Sequence
2122 bp (2122 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631663
> BO10161.complete
GAAGTTATCAGTCGACATGTCGTTTTCCAATGTCCTAATCATGCGACAGC
CCGACGAGGGCAAGTGCCACATTTGCAAGCGTGTCTTCTGTTGCGGCAAA
TGCCGCCAGAAGCATCAGTTCAAAGCGCACGCCATTGCTGTGCGCGAGCC
ATTGGGATTGAGGTCTGCCGGCGGCGGTATCATCGAGCATCGCCATCAAA
TGGAGTCCGGCGCGACCACCATCTATGTGTTCTGTCCGATCTGCGAGCGG
CGTCCCCTGCTGCTGCGCGAGGAGATGCACGGCGAGCTGCTGGCCCACAT
CGAGACCTGCCACCTGCCGCTGCGATGCCGCAAGTGCCAGCGCAACTACA
CGCGCGTCGATGACCTGCGGGAGTTCAGCAAGTGCGTGGACCAGCAGCAG
AGCTGCACTGATGTCACCGGCGCCACGGAGACATCGAAGGCGACGCTAAA
GAAGGCAGCGAATAGCACCGCCATTTCAACGCAAACGTCGCCGTCCGTAA
CGCCCATTTCACTGATCAACATGCGCTGGAAGGCCAAGAGCCGTGTCACC
CACGAGGAGTTCATCAGCGACAGCGTCTCCTCCATACGCAACCTGTCGTC
GTTCAGCAACAGCTCCATTCGTCGCTCCATTGGCCAACTGGGCGTGAATC
CGTCCGAAACGATGGAGAAGGGCAAGGTCATACGCTCGACGTCCACACCA
CTGCACGTGGAGTCCGTGTTCGCCAAGCCCAAGGAGCCGATTACCTTCAA
TGCTTCCACTGGCGGCCACGTGTCCAGCATCTACCACGAGGAGCCCAGTC
CGACACCCGAAAGCAATCCCGTCCAGCAGCAGCAGCAGCAGCAGCAGCCG
TTGCAGCAGCGCGCCTGGAAAATGGGCGCCCGCAACAAGATGAGCGCCGC
AACGCCGCTGCGCCAGGTCATGTCCAAGAGCATTCAGAAGGCCTTCGTCG
AGCACGGCGGCATGATGGTCCACCAGCCACCATCCGCAGTGGTGCAACGT
CGCGTGCGCCTCGATCTCAGCGAGCACAGTTCGCACGAGGCAGCAGGCTC
GTCCGCTCTGGACCTGCGACTCTCGCCAGCTATGCGGCGCACCCAGAGCG
AGTCCAGCGCCTCGGAGGTCAACAGCGGCAGCAGCTCCAGCTACAGCACC
TCGCGGAATGCCGATCTATGCAAGCGGCAGTTCTTGCTGTCCGCACAGAA
ACTCACCACCGAGTCGATCATCATCACGCGGACGAACTCCAGCTCACAGA
AGACCTCTTCCACGGTGTACAACTCATGCGAGAGCGTCGAGATCATACGC
TCCACCTCGGAATCAGCGGAAGTGTGCCACGTGCCGGCCATAACGCCCAT
CCGTGTCACCGGTGCCGGCATCAACAAGAAGCAGATCAAGTTCGAGACGC
CGCCCAAGAGCAGCCAACAGATGCGATCGAATGGCGAGGGCGATGAAACC
AAGGACCAGTTTTTCACGCCGGAACCGGGAACGCCGGAAATTCCAGAGCG
TCGTCATCGCCAGGCGATTGTGCCGCGCCAGCTGAGCGGCGAGTTTTCGC
CCAAGAAGGATAAGCCGAAGGAGAAGGGGCTGGCGGTGATGGCCCTGATC
TCGCCGCCATTGCAGCAACCCAGGGTGCGTCCTCCGTTGCGGGAATGCCG
TCAGCAGAGGGTCTATAGCGGCGTGCAGGATGTGGGCGAGCCGGAGGTCG
TGGACGCAGAAGAGGAGGACGAGGTGTTCCGCCCCACAAACGCCTCCACG
TGCAACGACAAAAAGCTGGAGGCGCCCAACTCCGGTCGCCTGTGGTCGCT
GATGAGTTCCATGATGCGACTGCCGGCCAGCTTGCGCGGCGAACGCGAAA
AGGACAGGGACAGGGACAGGGATTCGGATAAGGAGAACGCTGGTTCGGGC
TCACTCATCCGTCGCTGCGCCTCCATCGCTGGATCCCTGGTGCGCCCCAG
TGCAAGGGACTCCTCCATGGAGGACCAGCAGTGCCTCAAGAGAAAGCGCA
CTCAGACGCTGGACAGCCAGTACTGTAGCCCGCTGTCGCCGTCCAGCTCC
TCGAAGCGCTACCGCATCCGGCCCAGGGAGCCCATCGAGCGCATGCGTCG
CCAGGCAAGCTTTCTAGACCAT
BO10161.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2091 | CG2707-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-RA | 2235 | CG2707-RA | 59..2146 | 17..2104 | 10440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2724441..2726488 | 57..2104 | 10240 | 100 | Plus |
| X | 23542271 | X | 2724344..2724386 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:12 has no hits.
BO10161.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:38 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 1..2091 | 17..2105 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:19 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..2153 | 9..2113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:29 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 59..2146 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:38 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 53..2153 | 9..2113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:04 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fs(1)Ya-RA | 59..2146 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:04 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2724344..2724385 | 17..58 | 100 | -> | Plus |
| X | 2724443..2726488 | 59..2106 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:29 Download gff for
BO10161.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2618377..2618418 | 17..58 | 100 | -> | Plus |
| arm_X | 2618476..2620521 | 59..2106 | 99 | | Plus |
BO10161.pep Sequence
Translation from 16 to 2122
> BO10161.pep
MSFSNVLIMRQPDEGKCHICKRVFCCGKCRQKHQFKAHAIAVREPLGLRS
AGGGIIEHRHQMESGATTIYVFCPICERRPLLLREEMHGELLAHIETCHL
PLRCRKCQRNYTRVDDLREFSKCVDQQQSCTDVTGATETSKATLKKAANS
TAISTQTSPSVTPISLINMRWKAKSRVTHEEFISDSVSSIRNLSSFSNSS
IRRSIGQLGVNPSETMEKGKVIRSTSTPLHVESVFAKPKEPITFNASTGG
HVSSIYHEEPSPTPESNPVQQQQQQQQPLQQRAWKMGARNKMSAATPLRQ
VMSKSIQKAFVEHGGMMVHQPPSAVVQRRVRLDLSEHSSHEAAGSSALDL
RLSPAMRRTQSESSASEVNSGSSSSYSTSRNADLCKRQFLLSAQKLTTES
IIITRTNSSSQKTSSTVYNSCESVEIIRSTSESAEVCHVPAITPIRVTGA
GINKKQIKFETPPKSSQQMRSNGEGDETKDQFFTPEPGTPEIPERRHRQA
IVPRQLSGEFSPKKDKPKEKGLAVMALISPPLQQPRVRPPLRECRQQRVY
SGVQDVGEPEVVDAEEEDEVFRPTNASTCNDKKLEAPNSGRLWSLMSSMM
RLPASLRGEREKDRDRDRDSDKENAGSGSLIRRCASIAGSLVRPSARDSS
MEDQQCLKRKRTQTLDSQYCSPLSPSSSSKRYRIRPREPIERMRRQASFL
DH
BO10161.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fs(1)Ya-PA | 696 | CG2707-PA | 1..696 | 1..696 | 3582 | 100 | Plus |
