Clone Sequence Records
BO10162.3prime Sequence
969 bp (890 high quality bases) assembled on 2006-04-19
> BO10162.3prime
ATGGTCTAGAAAGCTTGCATACATGTATGCAGGAGCAGGAGCCGTGGCAG
CCGTGCTGCCCGCATCCGATGCACCAACTTTCTGGAGCGGAACAATCATG
GACTTCATGTCTCTGTTCGAGGTCTTCCGCAACTCCGTAGCCGCGTGCTG
CAGCTGCAGGGTGCAGTCGTTGCTGGCTCCGTTCAGGCTGAGATGGGCGC
ACTCCTTCTCCAGCAGCATGGCCAAAGCCTCCAGCAACTCGACGAATCCC
AGCGCCAGGGCAGCGCGGCGGATGCGATTGAGCTCCTTGTAGAAGTGCTG
CGTCTTGTCGGGCATCTTCTTGGCGTGTCGCAGTACCTTCTGGACGTCGG
ACTGCAGGCTAGCCTGTCGTATCCACACCACACTGCTCTGCGAATAAGAT
CTGCGGTCGGCACGCACCGGAAAACTGGCCGTCTCTCCGGGCGCCAAATC
CTCGGGGAAGCCCAGCGATTCCAGGTCTCCTAGCCAGGGAATCACGTTCG
TGCCGGGTGGAAGTATGTTCAGCATCAGGTTTGACTTCTTCTTGCTGTCG
GTGAATGCATATATGAATCCGTACCACTTGTCACCCACTCGAACCAGAGC
TGCCATGTTCTCCATTTTGAGGGCTCCGTGAAGGAGGACGCACAAGTTTT
CTTTTTGTTGCTCTGTCTGGGGGCCGGGTTTCAAGACAATGGTCACATCG
TCGTCGCCACTTTCCTCCGTGTCTTTTGAATCCTTGGCGTANAACTCTTT
GATATCGGCTTCCAGCTTCTCCAGCTCGTAGTTGGGATTGCTGGTATCTA
GATTGAGCTTCGGTGGCTTGGCTGCTGCGCTCANGTTTCCAGACCTCCGA
CTGCTGCCGCTCTTCTCCCGCTCCACTTTGGGCAGCACCCAGTGTCGACT
CAGGGTGGGCGGTGATCCAATGTCCGAAAAGGACAGGAAGCCACACACCT
CAATCTTCTGGTCTGTGTG
BO10162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4785-PA | 1764 | CG4785-RA | 811..1761 | 969..19 | 4667 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 908..1858 | 969..19 | 4703 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1165408..1166358 | 969..19 | 4703 | 99.6 | Minus |
Blast to na_te.dros performed 2015-02-12 01:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 892..1008 | 260..142 | 121 | 58 | Minus |
BO10162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:43 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 811..1764 | 16..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:45 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 811..1764 | 16..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:18 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 908..1867 | 10..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:42:44 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 908..1867 | 10..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:42:44 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1165408..1166367 | 10..969 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:18 Download gff for
BO10162.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1165408..1166367 | 10..969 | 99 | | Minus |
BO10162.5prime Sequence
914 bp (836 high quality bases) assembled on 2006-04-19
> BO10162.5prime
GAAGTTATCAGTCGACATGCCCACCTTAATAGCGCTGGATGCATCGCTAT
CGATGCTGCGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTCGCTG
GCCACCAAGGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCGGCAA
ATTGGAGCACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTGAAGG
TGGACTTCACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAAGGTG
GAGCCCGTGGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGGTGTC
CATAATGTCGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTCTTTA
CGGACTGCGGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCTGGAG
GCCTACGCCGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGACTCT
GGCCAACTACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGATTACT
ACTTCACCAGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGTCTCA
CTGAAGGGCCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATGCAGT
CGAGGGAAATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAACTGG
GCCGCACTACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAGCTAC
AAGAGTTCGGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGGAGGC
ATCTGTTCTGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCCCACA
TATTCGGCCGAGAACCCACCATTCGCCACACAGACCAGAAGATTGAGGTG
TGTGGCTTCCTGTCCCTTTCGGACATTGGATCACCGGGCACCCTGAGTCG
ACACTGGGTGCTGC
BO10162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4785-PA | 1764 | CG4785-RA | 1..898 | 17..914 | 4465 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 94..995 | 13..914 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1164536..1165081 | 13..558 | 2715 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1165138..1165495 | 557..914 | 1775 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:09:30 has no hits.
BO10162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:44 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:46 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-PA | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:30:50 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 86..995 | 5..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:45:21 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 86..995 | 5..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:45:21 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1164533..1165080 | 11..557 | 99 | -> | Plus |
| 2L | 1165139..1165495 | 558..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:30:50 Download gff for
BO10162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1164533..1165080 | 11..557 | 99 | -> | Plus |
| arm_2L | 1165139..1165495 | 558..914 | 99 | | Plus |
BO10162.complete Sequence
1795 bp (1795 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631664
> BO10162.complete
GAAGTTATCAGTCGACATGCCCACCTTAATAGCGCTGGATGCATCGCTAT
CGATGCTGCGCCCGGTGCCGGGAAGAAATGAGCACACCTACCAGTCGCTG
GCCACCAAGGGCATCCAGCATCTGCTGGACAATCTCACGGCGGCCGGCAA
ATTGGAGCACGTTGCTCTGCTCTCCTATTCGACGACGGCGGAACTGAAGG
TGGACTTCACGCGGGACTACGACCAGGTGCGGCAGGCGGTCAAGAAGGTG
GAGCCCGTGGACAAGGCCTGCCTGATGAGCATGCTCAAGGCGGTGGTGTC
CATAATGTCGCCGTGGGGCAACCAGAACATCCTGCAGGTGGTTGTCTTTA
CGGACTGCGGCCTCGGCTTTGGCAACACCTCGATCACGGGCTTCCTGGAG
GCCTACGCCGAAAAGGAGTCGGAGCCGGAGTTCGGCTTCCTGAAGACTCT
GGCCAACTACAACCTGAATTTCATCTGCCTGGGCCTGCACGGCGATTACT
ACTTCACCAGGGGATTGGCGGTGTACCAGCAGCTGCTGGACAAGGTCTCA
CTGAAGGGCCAGCTCTTCATGACAAAGCCCGCCAAGAGCAGCGATGCAGT
CGAGGGAAATCCCAATCCCAACCCGAACCCCAGCCACAAAAGCGAACTGG
GCCGCACTACGGTCTTCGAACTAATTGAACGTCTCTGCGAGGCCAGCTAC
AAGAGTTCGGAGGTGACCCTGAAATGCGGCAGCTACTTCCGCATGGAGGC
ATCTGTTCTGCTCTGGCCACCGACGGCTCCGTATGAGCAAAAGTCCCACA
TATTCGGCCGAGAACCCACCATTCGCCACACAGACCAGAAGATTGAGGTG
TGTGGCTTCCTGTCCCTTTCGGACATTGGATCACCGGCCACCCTGAGTCG
ACACTGGGTGCTGCCCAAAGTGGAGCGGGAGAAGAGCGGCAGCAGTCGGA
GGTCTGGAAACCTGAGCGCAGCAGCCAAGCCACCGAAGCTCAATCTAGAT
ACCAGCAATCCCAACTACGAGCTGGAGAAGCTGGAAGCCGATATCAAAGA
GTTTTACGCCAAGGATTCAAAAGACACGGAGGAAAGTGGCGACGACGATG
TGACCATTGTCTTGAAACCCGGCCCCCAGACAGAGCAACAAAAAGAAAAC
TTGTGCGTCCTCCTTCACGGAGCCCTCAAAATGGAGAACATGGCAGCTCT
GGTTCGAGTGGGTGACAAGTGGTACGGATTCATATATGCATTCACCGACA
GCAAGAAGAAGTCAAACCTGATGCTGAACATACTTCCACCCGGCACGAAC
GTGATTCCCTGGCTAGGAGACCTGGAATCGCTGGGCTTCCCCGAGGATTT
GGCGCCCGGAGAGACGGCCAGTTTTCCGGTGCGTGCCGACCGCAGATCTT
ATTCGCAGAGCAGTGTGGTGTGGATACGACAGGCTAGCCTGCAGTCCGAC
GTCCAGAAGGTACTGCGACACGCCAAGAAGATGCCCGACAAGACGCAGCA
CTTCTACAAGGAGCTCAATCGCATCCGCCGCGCTGCCCTGGCGCTGGGAT
TCGTCGAGTTGCTGGAGGCTTTGGCCATGCTGCTGGAGAAGGAGTGCGCC
CATCTCAGCCTGAACGGAGCCAGCAACGACTGCACCCTGCAGCTGCAGCA
CGCGGCTACGGAGTTGCGGAAGACCTCGAACAGAGACATGAAGTCCATGA
TTGTTCCGCTCCAGAAAGTTGGTGCATCGGATGCGGGCAGCACGGCTGCC
ACGGCTCCTGCTCCTGCATACATGTATGCAAGCTTTCTAGACCAT
BO10162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:35:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1764 | CG4785-PA | 1..1761 | 17..1777 | 8805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:35:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-RA | 1925 | CG4785-RA | 94..1858 | 13..1777 | 8810 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:35:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1165138..1166358 | 557..1777 | 6105 | 100 | Plus |
| 2L | 23513712 | 2L | 1164536..1165081 | 13..558 | 2715 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-26 15:35:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 892..1008 | 1536..1654 | 121 | 58 | Plus |
BO10162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:26 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 1..1764 | 17..1780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:02 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 59..1840 | 5..1786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:02:31 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 98..1858 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:27 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4785-RA | 59..1840 | 5..1786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:44:50 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS14-RA | 98..1858 | 17..1779 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:44:50 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1164540..1165080 | 17..557 | 100 | -> | Plus |
| 2L | 1165139..1166358 | 558..1779 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:02:31 Download gff for
BO10162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1164540..1165080 | 17..557 | 100 | -> | Plus |
| arm_2L | 1165139..1166358 | 558..1779 | 99 | | Plus |
BO10162.pep Sequence
Translation from 16 to 1795
> BO10162.pep
MPTLIALDASLSMLRPVPGRNEHTYQSLATKGIQHLLDNLTAAGKLEHVA
LLSYSTTAELKVDFTRDYDQVRQAVKKVEPVDKACLMSMLKAVVSIMSPW
GNQNILQVVVFTDCGLGFGNTSITGFLEAYAEKESEPEFGFLKTLANYNL
NFICLGLHGDYYFTRGLAVYQQLLDKVSLKGQLFMTKPAKSSDAVEGNPN
PNPNPSHKSELGRTTVFELIERLCEASYKSSEVTLKCGSYFRMEASVLLW
PPTAPYEQKSHIFGREPTIRHTDQKIEVCGFLSLSDIGSPATLSRHWVLP
KVEREKSGSSRRSGNLSAAAKPPKLNLDTSNPNYELEKLEADIKEFYAKD
SKDTEESGDDDVTIVLKPGPQTEQQKENLCVLLHGALKMENMAALVRVGD
KWYGFIYAFTDSKKKSNLMLNILPPGTNVIPWLGDLESLGFPEDLAPGET
ASFPVRADRRSYSQSSVVWIRQASLQSDVQKVLRHAKKMPDKTQHFYKEL
NRIRRAALALGFVELLEALAMLLEKECAHLSLNGASNDCTLQLQHAATEL
RKTSNRDMKSMIVPLQKVGASDAGSTAATAPAPAYMYASFLDH
BO10162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS14-PA | 587 | CG4785-PA | 1..587 | 1..587 | 3032 | 100 | Plus |
