Clone BO10163 Report

Search the DGRC for BO10163

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptNup50-RA
Protein status:BO10163.pep: validated full length
Sequenced Size:1726

Clone Sequence Records

BO10163.3prime Sequence

874 bp (834 high quality bases) assembled on 2006-04-19

> BO10163.3prime
ATGGTCTAGAAAGCTTGCCTTGATGTGCTCCTTGATCTTCTCCAGCAAGT
CGTCGGCTTCGTCACCGGTCTTTACGCGTAGCAACAGCGATGTGGCCTTG
GAGTCCTCTGGCGTGGGCACGCAGACCATCAGCACATTGTTCTTGCCCAT
GCGCTGGCAAGGTATACCCTTGCTAAGAATAAGGTTGACCAAGATGTTGC
CCAGATTGGTGTCGGCGCGGACTAACAGTTGGATCTTTTCGGAGTCCTTG
ACAGGTTTCAAGTACAACGTGCCCACGCCACGATCGCCAAAGTCCTTGTC
TTTCTTAATGAACACCTTACACCGCTTGGAGTATATAGCGTCATCCTCCA
CAACCTGTTTAAACTCGACTTTTGGGGGCGTATCCTCTTCTTTTTCCTCC
TCCGCAGGCGCTGCCGCTGCAGCTGGCGGATGAATGTTTCCGAGAGAGAA
GGGCGTGGCACTGTTGGTGAAGGAAAAGCCCTTTGCGCCGTCTCCTGCTC
CTCCAGGCGCTTTTCCGAAACCCGCAAACAACGAGGTGCTTGGCTTGTCG
TCGTTGTTACTTTTCAGTCCGAAGGAAAAGCCATTGGTCTTCGGTGCCGA
GAAGTTAGGCTCATCCTTTTTAGTGGTCGTATCCTTTGCTCCAAAGCTAA
AAATGCTGGACTTAGGGGTATCATCGGATTTGGCTTCTCCAGTGGGTTTT
GCTGTCAAACTGAAGATACTGGAGGAGGACGGCACTGGCGCAGTGAACGA
TGCCGTACTGCCGAAGGAGACCAGTGGTGTTGCGGTCGTGGTGGTTGTTC
CACCACTGGTTATGGTGCAGTTGGGTTTCTTGGCTAAGGGCGATACGCTG
GCGCCTATTGGCGCGCTGGGCTTG

BO10163.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2158-PA 1695 CG2158-RA 837..1692 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-RA 1907 CG2158-RA 939..1794 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8124030..8124551 874..353 2610 100 Minus
2R 25286936 2R 8124604..8124945 360..19 1710 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:57:22 has no hits.

BO10163.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:45 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2158-PA 837..1695 18..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:48 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2158-PA 837..1695 18..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:49 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 939..1794 19..874 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:54 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 939..1794 19..874 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:54 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8124030..8124549 355..874 100 -> Minus
2R 8124610..8124945 19..354 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:49 Download gff for BO10163.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4011535..4012054 355..874 100 -> Minus
arm_2R 4012115..4012450 19..354 100   Minus

BO10163.5prime Sequence

891 bp (760 high quality bases) assembled on 2006-04-19

> BO10163.5prime
GAAGTTATCAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGA
ACCACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTC
CGCACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCG
CCGCAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAG
AAAAGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGC
AAGCCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAA
TGTGACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCAT
TCTCGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGC
ACTAGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTT
GCCGGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCT
CGATATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAA
ACCAGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTA
CCGTGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGG
ACCAAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAAC
TATGATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAA
CTCCACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAA
AGGTGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTT
GGCAAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTT

BO10163.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2158-PA 1695 CG2158-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-RA 1907 CG2158-RA 103..977 17..891 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8123419..8124068 242..891 3250 100 Plus
2R 25286936 2R 8123138..8123365 17..244 1140 100 Plus
Blast to na_te.dros performed 2015-02-12 00:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6805..6880 510..585 110 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2375 517..585 108 63.8 Plus

BO10163.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:46 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2158-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:49 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2158-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:14:13 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 103..977 17..891 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:04 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 103..977 17..891 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:04 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8123138..8123363 17..242 100 -> Plus
2R 8123420..8124068 243..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:14:13 Download gff for BO10163.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4010643..4010868 17..242 100 -> Plus
arm_2R 4010925..4011573 243..891 100   Plus

BO10163.complete Sequence

1726 bp (1726 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631665

> BO10163.complete
GAAGTTATCAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGA
ACCACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTC
CGCACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCG
CCGCAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAG
AAAAGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGC
AAGCCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAA
TGTGACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCAT
TCTCGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGC
ACTAGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTT
GCCGGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCT
CGATATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAA
ACCAGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTA
CCGTGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGG
ACCAAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAAC
TATGATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAA
CTCCACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAA
AGGTGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTT
GGCAAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTAGCCAAGAA
ACCCAACTGCACCATAACCAGTGGTGGAACAACCACCACGACCGCAACAC
CACTGGTCTCCTTCGGCAGTACGGCATCGTTCACTGCGCCAGTGCCGTCC
TCCTCCAGTATCTTCAGTTTGACAGCAAAACCCACTGGAGAAGCCAAATC
CGATGATACCCCTAAGTCCAGCATTTTTAGCTTTGGAGCAAAGGATACGA
CCACTAAAAAGGATGAGCCTAACTTCTCGGCACCGAAGACCAATGGCTTT
TCCTTCGGACTGAAAAGTAACAACGACGACAAGCCAAGCACCTCGTTGTT
TGCGGGTTTCGGAAAAGCGCCTGGAGGAGCAGGAGACGGCGCAAAGGGCT
TTTCCTTCACCAACAGTGCCACGCCCTTCTCTCTCGGAAACATTCATCCG
CCAGCTGCAGCGGCAGCGCCTGCGGAGGAGGAAAAAGAAGAGGATACGCC
CCCAAAAGTCGAGTTTAAACAGGTTGTGGAGGATGACGCTATATACTCCA
AGCGGTGTAAGGTGTTCATTAAGAAAGACAAGGACTTTGGCGATCGTGGC
GTGGGCACGTTGTACTTGAAACCTGTCAAGGACTCCGAAAAGATCCAACT
GTTAGTCCGCGCCGACACCAATCTGGGCAACATCTTGGTCAACCTTATTC
TTAGCAAGGGTATACCTTGCCAGCGCATGGGCAAGAACAATGTGCTGATG
GTCTGCGTGCCCACGCCAGAGGACTCCAAGGCCACATCGCTGTTGCTACG
CGTAAAGACCGGTGACGAAGCCGACGACTTGCTGGAGAAGATCAAGGAGC
ACATCAAGGCAAGCTTTCTAGACCAT

BO10163.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-RA 1695 CG2158-PA 1..1692 17..1708 8460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-RA 1907 CG2158-RA 103..1794 17..1708 8460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8123419..8124551 242..1374 5665 100 Plus
2R 25286936 2R 8124604..8124945 1367..1708 1710 100 Plus
2R 25286936 2R 8123138..8123365 17..244 1140 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:20:37 has no hits.

BO10163.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:28 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 1..1695 17..1709 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:03 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 123..1814 17..1708 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:52 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 103..1794 17..1710 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:28 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
CG2158-RA 123..1814 17..1708 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:29 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
Nup50-RA 103..1794 17..1710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:29 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8123138..8123363 17..242 100 -> Plus
2R 8123420..8124549 243..1372 100 -> Plus
2R 8124610..8124945 1373..1710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:52 Download gff for BO10163.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4010643..4010868 17..242 100 -> Plus
arm_2R 4010925..4012054 243..1372 100 -> Plus
arm_2R 4012115..4012450 1373..1710 99   Plus

BO10163.pep Sequence

Translation from 16 to 1726

> BO10163.pep
MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG
GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA
TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES
TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA
DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK
TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI
TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK
SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK
APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF
KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD
TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD
EADDLLEKIKEHIKASFLDH

BO10163.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Nup50-PA 564 CG2158-PA 1..564 1..564 2856 100 Plus
CG46026-PA 666 CG46026-PA 207..523 64..373 161 24.2 Plus
Mur29B-PA 555 CG31901-PA 88..474 48..446 160 23.2 Plus