Clone Sequence Records
BO10163.3prime Sequence
874 bp (834 high quality bases) assembled on 2006-04-19
> BO10163.3prime
ATGGTCTAGAAAGCTTGCCTTGATGTGCTCCTTGATCTTCTCCAGCAAGT
CGTCGGCTTCGTCACCGGTCTTTACGCGTAGCAACAGCGATGTGGCCTTG
GAGTCCTCTGGCGTGGGCACGCAGACCATCAGCACATTGTTCTTGCCCAT
GCGCTGGCAAGGTATACCCTTGCTAAGAATAAGGTTGACCAAGATGTTGC
CCAGATTGGTGTCGGCGCGGACTAACAGTTGGATCTTTTCGGAGTCCTTG
ACAGGTTTCAAGTACAACGTGCCCACGCCACGATCGCCAAAGTCCTTGTC
TTTCTTAATGAACACCTTACACCGCTTGGAGTATATAGCGTCATCCTCCA
CAACCTGTTTAAACTCGACTTTTGGGGGCGTATCCTCTTCTTTTTCCTCC
TCCGCAGGCGCTGCCGCTGCAGCTGGCGGATGAATGTTTCCGAGAGAGAA
GGGCGTGGCACTGTTGGTGAAGGAAAAGCCCTTTGCGCCGTCTCCTGCTC
CTCCAGGCGCTTTTCCGAAACCCGCAAACAACGAGGTGCTTGGCTTGTCG
TCGTTGTTACTTTTCAGTCCGAAGGAAAAGCCATTGGTCTTCGGTGCCGA
GAAGTTAGGCTCATCCTTTTTAGTGGTCGTATCCTTTGCTCCAAAGCTAA
AAATGCTGGACTTAGGGGTATCATCGGATTTGGCTTCTCCAGTGGGTTTT
GCTGTCAAACTGAAGATACTGGAGGAGGACGGCACTGGCGCAGTGAACGA
TGCCGTACTGCCGAAGGAGACCAGTGGTGTTGCGGTCGTGGTGGTTGTTC
CACCACTGGTTATGGTGCAGTTGGGTTTCTTGGCTAAGGGCGATACGCTG
GCGCCTATTGGCGCGCTGGGCTTG
BO10163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2158-PA | 1695 | CG2158-RA | 837..1692 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup50-RA | 1907 | CG2158-RA | 939..1794 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8124030..8124551 | 874..353 | 2610 | 100 | Minus |
2R | 25286936 | 2R | 8124604..8124945 | 360..19 | 1710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:22 has no hits.
BO10163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:45 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-PA | 837..1695 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:48 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-PA | 837..1695 | 18..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:49 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 939..1794 | 19..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:54 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 939..1794 | 19..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:54 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8124030..8124549 | 355..874 | 100 | -> | Minus |
2R | 8124610..8124945 | 19..354 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:49 Download gff for
BO10163.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4011535..4012054 | 355..874 | 100 | -> | Minus |
arm_2R | 4012115..4012450 | 19..354 | 100 | | Minus |
BO10163.5prime Sequence
891 bp (760 high quality bases) assembled on 2006-04-19
> BO10163.5prime
GAAGTTATCAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGA
ACCACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTC
CGCACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCG
CCGCAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAG
AAAAGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGC
AAGCCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAA
TGTGACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCAT
TCTCGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGC
ACTAGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTT
GCCGGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCT
CGATATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAA
ACCAGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTA
CCGTGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGG
ACCAAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAAC
TATGATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAA
CTCCACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAA
AGGTGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTT
GGCAAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTT
BO10163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2158-PA | 1695 | CG2158-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup50-RA | 1907 | CG2158-RA | 103..977 | 17..891 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8123419..8124068 | 242..891 | 3250 | 100 | Plus |
2R | 25286936 | 2R | 8123138..8123365 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 00:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6880 | 510..585 | 110 | 64.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2375 | 517..585 | 108 | 63.8 | Plus |
BO10163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:46 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:49 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:14:13 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 103..977 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:05:04 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 103..977 | 17..891 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:05:04 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8123138..8123363 | 17..242 | 100 | -> | Plus |
2R | 8123420..8124068 | 243..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:14:13 Download gff for
BO10163.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4010643..4010868 | 17..242 | 100 | -> | Plus |
arm_2R | 4010925..4011573 | 243..891 | 100 | | Plus |
BO10163.complete Sequence
1726 bp (1726 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631665
> BO10163.complete
GAAGTTATCAGTCGACATGGCTGGCAAGCGACAAGCCACTTCGAACCTGA
ACCACGAAAACTGGGACCTGGAGGAGGAACCCGAGGAGCGCGGCACATTC
CGCACGGCCACCGAAGAGGAGCTAAAGACACGCGTTATCAAGAAGGCGCG
CCGCAAGATTGCCGGTGGATCGTCCGCCGCTGAAGAGGATGGCGCCGAAG
AAAAGACTGCAGAGCCCAAAAGTGTGTTCAGTGGCTTTTCCGGTTTCGGC
AAGCCGGCTGCGAGCCCAGCCGCGGGTTCGCCTTTCTCCTTCCTGGCCAA
TGTGACGGCACCAGCCACGACCTCTAGCAGCGAGCCAAAAAAGTCTGCAT
TCTCGTTCGGGTTCAGCTCCAGTTCCAGTTCGGCCGATCGGCCTGTCAGC
ACTAGCATTTGCGGCACCGCCAGCACCAGCAGCACGGCCCCCTCTCCTTT
GCCGGCCAAGGAATCAACAAGTACCGTCGATGGCGCCAAGCCGACCACCT
CGATATTTGGCAACATATCAGCTGCCAAGAAGGAGAGTAGCGAGGCCAAA
ACCAGCAGCAGCAGCACTAGCCTCACATCCACCATGGAGACCTCCGAGTA
CCGTGAAAGCGTTGCTGACCTAAATCGGTCCGTCATAAAATTCCTGCAGG
ACCAAATGGGCAAAAGTCCCTACTGCATACTGACTCCAGTGTTTAAGAAC
TATGATGAGCATCTAAAGGATCTGCAAGACGAGGAGAGCGCCAGAACGAA
CTCCACGAAATCCAAAACGGCACAAGCTCGTTCTCAAGAACCAGTTGCAA
AGGTGTCCCGTGCATCGTCGCCACCAAAAGCGGCTACTACGTTTACGTTT
GGCAAGCCCAGCGCGCCAATAGGCGCCAGCGTATCGCCCTTAGCCAAGAA
ACCCAACTGCACCATAACCAGTGGTGGAACAACCACCACGACCGCAACAC
CACTGGTCTCCTTCGGCAGTACGGCATCGTTCACTGCGCCAGTGCCGTCC
TCCTCCAGTATCTTCAGTTTGACAGCAAAACCCACTGGAGAAGCCAAATC
CGATGATACCCCTAAGTCCAGCATTTTTAGCTTTGGAGCAAAGGATACGA
CCACTAAAAAGGATGAGCCTAACTTCTCGGCACCGAAGACCAATGGCTTT
TCCTTCGGACTGAAAAGTAACAACGACGACAAGCCAAGCACCTCGTTGTT
TGCGGGTTTCGGAAAAGCGCCTGGAGGAGCAGGAGACGGCGCAAAGGGCT
TTTCCTTCACCAACAGTGCCACGCCCTTCTCTCTCGGAAACATTCATCCG
CCAGCTGCAGCGGCAGCGCCTGCGGAGGAGGAAAAAGAAGAGGATACGCC
CCCAAAAGTCGAGTTTAAACAGGTTGTGGAGGATGACGCTATATACTCCA
AGCGGTGTAAGGTGTTCATTAAGAAAGACAAGGACTTTGGCGATCGTGGC
GTGGGCACGTTGTACTTGAAACCTGTCAAGGACTCCGAAAAGATCCAACT
GTTAGTCCGCGCCGACACCAATCTGGGCAACATCTTGGTCAACCTTATTC
TTAGCAAGGGTATACCTTGCCAGCGCATGGGCAAGAACAATGTGCTGATG
GTCTGCGTGCCCACGCCAGAGGACTCCAAGGCCACATCGCTGTTGCTACG
CGTAAAGACCGGTGACGAAGCCGACGACTTGCTGGAGAAGATCAAGGAGC
ACATCAAGGCAAGCTTTCTAGACCAT
BO10163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup50-RA | 1695 | CG2158-PA | 1..1692 | 17..1708 | 8460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup50-RA | 1907 | CG2158-RA | 103..1794 | 17..1708 | 8460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:20:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8123419..8124551 | 242..1374 | 5665 | 100 | Plus |
2R | 25286936 | 2R | 8124604..8124945 | 1367..1708 | 1710 | 100 | Plus |
2R | 25286936 | 2R | 8123138..8123365 | 17..244 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:20:37 has no hits.
BO10163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:28 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-RA | 1..1695 | 17..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:03 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-RA | 123..1814 | 17..1708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:52 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 103..1794 | 17..1710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:28 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2158-RA | 123..1814 | 17..1708 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:05:29 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup50-RA | 103..1794 | 17..1710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:05:29 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8123138..8123363 | 17..242 | 100 | -> | Plus |
2R | 8123420..8124549 | 243..1372 | 100 | -> | Plus |
2R | 8124610..8124945 | 1373..1710 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:52 Download gff for
BO10163.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4010643..4010868 | 17..242 | 100 | -> | Plus |
arm_2R | 4010925..4012054 | 243..1372 | 100 | -> | Plus |
arm_2R | 4012115..4012450 | 1373..1710 | 99 | | Plus |
BO10163.pep Sequence
Translation from 16 to 1726
> BO10163.pep
MAGKRQATSNLNHENWDLEEEPEERGTFRTATEEELKTRVIKKARRKIAG
GSSAAEEDGAEEKTAEPKSVFSGFSGFGKPAASPAAGSPFSFLANVTAPA
TTSSSEPKKSAFSFGFSSSSSSADRPVSTSICGTASTSSTAPSPLPAKES
TSTVDGAKPTTSIFGNISAAKKESSEAKTSSSSTSLTSTMETSEYRESVA
DLNRSVIKFLQDQMGKSPYCILTPVFKNYDEHLKDLQDEESARTNSTKSK
TAQARSQEPVAKVSRASSPPKAATTFTFGKPSAPIGASVSPLAKKPNCTI
TSGGTTTTTATPLVSFGSTASFTAPVPSSSSIFSLTAKPTGEAKSDDTPK
SSIFSFGAKDTTTKKDEPNFSAPKTNGFSFGLKSNNDDKPSTSLFAGFGK
APGGAGDGAKGFSFTNSATPFSLGNIHPPAAAAAPAEEEKEEDTPPKVEF
KQVVEDDAIYSKRCKVFIKKDKDFGDRGVGTLYLKPVKDSEKIQLLVRAD
TNLGNILVNLILSKGIPCQRMGKNNVLMVCVPTPEDSKATSLLLRVKTGD
EADDLLEKIKEHIKASFLDH
BO10163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup50-PA | 564 | CG2158-PA | 1..564 | 1..564 | 2856 | 100 | Plus |
CG46026-PA | 666 | CG46026-PA | 207..523 | 64..373 | 161 | 24.2 | Plus |
Mur29B-PA | 555 | CG31901-PA | 88..474 | 48..446 | 160 | 23.2 | Plus |