Clone Sequence Records
BO10168.3prime Sequence
945 bp (786 high quality bases) assembled on 2006-04-19
> BO10168.3prime
ATGGTCTAGATAGCTTGCCTTGGACTCCTCAAGATCTTCTTTGTAGAGTT
CCTTGAAGATGAGCTTTTGTATCTTGGTGCGTATGCGCAGCTTCTGGGCT
GCGGTCAGCTGCTTCATGTACGGATGTAGGCTGAGCAAGTAGTGGTAGTC
ATCGTCCTCTGGTACGAGCGGAGTGTCCATTGTCGAGGAACCATTAAAAT
TGCTATCCTCGGAGAGACGCGGGCGCTTCAGCTTAAGGGCGGGTATCAGT
CCATTGGCGTAGGAGTGTTGAGTGAAGCTCAGGTGATCTCCGTTTCCTCC
TACAGCAGAGGTGGGTCCGAAATCCTCATTTCGGTCTTTGGCCGCAAGAT
GTGCTGCTGCCAGAGTGGCCAGCGGATGGTGTGCTTTGTTGTATAGAGGC
GGTGGCGACACAGATCTCTTGCCGCCCATTGGCGCTCCATTCGAGGATAC
AGATGACGCGGATGTGGTCGTTGCCGGCGCCAGAACAGCTGCTGAGCCCG
GTTGTTGTACTTGTGCGGATGTGGTGGTCACCATTGGCGGTGGAGAACAG
TGTGCGGCTGGTGGTTCCACTAGCACTTGTAGTGAGGGTGCCACTGGAGA
TGTCATTTGCTGTGGCGGAGGTGGCTTTCTGCTCAAGTCCTCCGCCTCCT
TTTCCAGCTCCATCAACTGAGCGCGGAGTAATCCTGCCTTAATTAAAGCG
TGCTGATGTGCCTCTTCTTGGGCTCGCAAAGCTCCGGTGGCCAGTGGTGT
GGTGCTAACTTGATTCATTTGATGCGCAGCCGGTGGCGTGGGCATCGTTT
CCTCCATGGTGGCTTCGCTAGCCTCTCCGTCCGCCTCATTTCCTCCTCGT
CGTAATCCTCGTCGCTGTCCTGCAGACGACGTATTAGACCGTTTGGTAAA
TCCGGCTCCACCACTGTCTTTTCACAGTCCTCGCTTTGCTGGCTG
BO10168.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PA | 1290 | CG6854-RA | 469..1287 | 837..19 | 4095 | 100 | Minus |
CG6854-PA | 1290 | CG6854-RA | 360..468 | 945..837 | 520 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RB | 1717 | CG45071-RB | 586..1513 | 945..19 | 4600 | 99.8 | Minus |
CG45071-RA | 1867 | CG45071-RA | 736..1663 | 945..19 | 4600 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:35:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109599..15110526 | 945..19 | 4575 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-09 03:35:25 has no hits.
BO10168.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:53 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 360..1290 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:42:59 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 360..1290 | 18..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:16:14 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 736..1663 | 19..945 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:24:31 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 736..1663 | 19..945 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:24:31 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15109599..15110526 | 19..945 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:16:14 Download gff for
BO10168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15102699..15103626 | 19..945 | 99 | | Minus |
BO10168.5prime Sequence
878 bp (814 high quality bases) assembled on 2006-04-19
> BO10168.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAAGATCGTTCTCAAGGCCAAATGGAAGGGAC
TTCGAGACAATTTCCGTGTGGAGTACAAAAGGATACCGCGGGCGGATAAC
GGTGATTTTATGGTGGATCCGGCCACCTTTGAGTCCAAGTGGCTGCACTA
CTATGCATTGTTGTTTTTAACTGATCACATGCGTCATCGTTTGCCAAAGA
ACGAACAGGATCAGTCATTTTACTTCAGCCAGCAAAGCGAGGACTGTGAA
AAGACAGTGGTGGAGCCGGATTTAACAAACGGTCTAATACGTCGTCTGCA
GGACAGCGACGAGGATTACGACGAGGAGGAAATGGAGGCGGACGGAGAGG
CTAGCGAAGCCACCATGGAGGAAACGATGCCCACGCCACCGGCTGCGCAT
CAAATGAATCAAGTTAGCACCACACCACTGGCCACCGGAGCTTTGCGAGC
CCAAGAAGAGGCACATCAGCACGCTTTAATTAAGGCAGGATTACTCCGCG
CTCAGTTGATGGAGCTGGAAAAGGAGGCGGAGGACTTGAGCAGAAAGCCA
CCTCCGCCACAGCAAATGACATCTCCAGTGGCACCCTCACTACAAGTGCT
AGTGGAACCACCAGCCGCACACTGTTCTCCACCGCCAATGGTGACCACCA
CATCCGCACAAGTACAACAAACCGGGCTCAGCAGCTGTTCTGGCGCCGGC
AACGACCACATCCGCGTCATCTGTATCC
BO10168.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PA | 1290 | CG6854-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
CG6854-PB | 1872 | CG6854-RB | 1..154 | 17..170 | 770 | 100 | Plus |
CG6854-PA | 1290 | CG6854-RA | 803..861 | 820..878 | 295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1867 | CG45071-RA | 377..1237 | 17..878 | 4285 | 99.9 | Plus |
CG45071-RB | 1717 | CG45071-RB | 529..1087 | 319..878 | 2775 | 99.8 | Plus |
CG45071-RB | 1717 | CG45071-RB | 377..530 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 246..399 | 17..170 | 770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109537..15110100 | 314..878 | 2760 | 99.6 | Plus |
3L | 28110227 | 3L | 15108805..15108958 | 17..170 | 770 | 100 | Plus |
3L | 28110227 | 3L | 15109334..15109491 | 167..324 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:03:57 has no hits.
BO10168.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:54 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:01 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PA | 1..861 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:04 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 377..1237 | 17..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:36:16 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 377..1237 | 17..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:36:16 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15109338..15109487 | 171..320 | 100 | -> | Plus |
3L | 15109544..15110100 | 321..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:04 Download gff for
BO10168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15102438..15102587 | 171..320 | 100 | -> | Plus |
arm_3L | 15102644..15103200 | 321..878 | 99 | | Plus |
BO10168.complete Sequence
1321 bp assembled on 2008-08-15
> BO10168.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAAGATCGTTCTCAAGGCCAAATGGAAGGGAC
TTCGAGACAATTTCCGTGTGGAGTACAAAAGGATACCGCGGGCGGATAAC
GGTGATTTTATGGTGGATCCGGCCACCTTTGAGTCCAAGTGGCTGCACTA
CTATGCATTGTTGTTTTTAACTGATCACATGCGTCATCGTTTGCCAAAGA
ACGAACAGGATCAGTCATTTTACTTCAGCCAGCAAAGCGAGGACTGTGAA
AAGACAGTGGTGGAGCCGGATTTAACAAACGGTCTAATACGTCGTCTGCA
GGACAGCGACGAGGATTACGACGAGGAGGAAATGGAGGCGGACGGAGAGG
CTAGCGAAGCCACCATGGAGGAAACGATGCCCACGCCACCGGCTGCGCAT
CAAATGAATCAAGTTAGCACCACACCACTGGCCACCGGAGCTTTGCGAGC
CCAAGAAGAGGCACATCAGCACGCTTTAATTAAGGCAGGATTACTCCGCG
CTCAGTTGATGGAGCTGGAAAAGGAGGCGGAGGACTTGAGCAGAAAGCCA
CCTCCGCCACAGCAAATGACATCTCCAGTGGCACCCTCACTACAAGTGCT
AGTGGAACCACCAGCCGCACACTGTTCTCCACCGCCAATGGTGACCACCA
CATCCGCACAAGTACAACAACCGGGCTCAGCAGCTGTTCTGGCGCCGGCA
ACGACCACATCCGCGTCATCTGTATCCTCGAATGGAGCGCCAATGGGCGG
CAAGAGATCTGTGTCGCCACCGCCTCTATACAACAAAGCACACCATCCGC
TGGCCACTCTGGCAGCAGCACATCTTGCGGCCAAAGACCGAAATGAGGAT
TTCGGACCCACCTCTGCTGTAGGAGGAAACGGAGATCACCTGAGCTTCAC
TCAACACTCCTACGCCAATGGACTGATACCCGCCCTTAAGCTGAAGCGCC
CGCGTCTCTCCGAGGATAGCAATTTTAATGGTTCCTCGACAATGGACACT
CCGCTCGTACCAGAGGACGATGACTACCACTACTTGCTCAGCCTACATCC
GTACATGAAGCAGCTGACCGCAGCCCAGAAGCTGCGCATACGCACCAAGA
TACAAAAGCTCATCTTCAAGGAACTCTACAAAGAAGATCTTGAGGAGTCC
AAGGCAAGCTATCTAGACCAT
BO10168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1290 | CG45071-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
CG45071-RB | 1140 | CG45071-PB | 153..1137 | 319..1303 | 4925 | 100 | Plus |
CG45071-RB | 1140 | CG45071-PB | 1..154 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 1872 | CG45070-PB | 1..154 | 17..170 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-RA | 1867 | CG45071-RA | 377..1663 | 17..1303 | 6435 | 100 | Plus |
CG45071-RB | 1717 | CG45071-RB | 529..1513 | 319..1303 | 4925 | 100 | Plus |
CG45071-RB | 1717 | CG45071-RB | 377..530 | 17..170 | 770 | 100 | Plus |
CTPsyn-RB | 2423 | CG45070-RB | 246..399 | 17..170 | 770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15109537..15110526 | 314..1303 | 4935 | 99.9 | Plus |
3L | 28110227 | 3L | 15108805..15108958 | 17..170 | 770 | 100 | Plus |
3L | 28110227 | 3L | 15109334..15109491 | 167..324 | 760 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:24:06 has no hits.
BO10168.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:15 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RA | 375..1661 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:42:01 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 377..1663 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:28 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RA | 375..1661 | 17..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:39 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG45071-RA | 377..1663 | 17..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:39 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15109338..15109487 | 171..320 | 100 | -> | Plus |
3L | 15109544..15110526 | 321..1305 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:42:01 Download gff for
BO10168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15102438..15102587 | 171..320 | 100 | -> | Plus |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15102644..15103626 | 321..1305 | 99 | | Plus |
BO10168.pep Sequence
Translation from 16 to 1321
> BO10168.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PKIVLKAKWKGLRDNFRVEYKRIPRADNGDFMVDPATFESKWLHYYALLF
LTDHMRHRLPKNEQDQSFYFSQQSEDCEKTVVEPDLTNGLIRRLQDSDED
YDEEEMEADGEASEATMEETMPTPPAAHQMNQVSTTPLATGALRAQEEAH
QHALIKAGLLRAQLMELEKEAEDLSRKPPPPQQMTSPVAPSLQVLVEPPA
AHCSPPPMVTTTSAQVQQPGSAAVLAPATTTSASSVSSNGAPMGGKRSVS
PPPLYNKAHHPLATLAAAHLAAKDRNEDFGPTSAVGGNGDHLSFTQHSYA
NGLIPALKLKRPRLSEDSNFNGSSTMDTPLVPEDDDYHYLLSLHPYMKQL
TAAQKLRIRTKIQKLIFKELYKEDLEESKASYLDH
BO10168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG45071-PA | 429 | CG45071-PA | 1..429 | 1..429 | 2248 | 100 | Plus |
CG45071-PB | 379 | CG45071-PB | 1..379 | 1..429 | 1822 | 85.1 | Plus |
CTPsyn-PB | 623 | CG45070-PB | 1..54 | 1..54 | 281 | 96.3 | Plus |