Clone BO10169 Report

Search the DGRC for BO10169

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG8531-RA
Protein status:BO10169.pep: Imported from assembly
Sequenced Size:1669

Clone Sequence Records

BO10169.3prime Sequence

959 bp (752 high quality bases) assembled on 2006-04-19

> BO10169.3prime
ATGGTCTAGAAAGCTTGCTCCTGACAGCGGTTGTCGCAGCGGCAGTCGCA
GCGCCTCGTTGTCCTTGATGTGAATCACTTCGAACTGGTTTTGATAGGTG
TACTCTATCCGCAGAATCTTGTCTTCGCCGATGCCCGGATCATAGAAGCC
GGGCAGGTCGCTCTTTGATGAATCATGCAGCTGCAGGGTCCCGTTCTTGA
CCATGCATTGAATGGCTACGGTGACGTCGAGCGATTGCTCTGGCTTGAAC
TGTCTGCCGCCCGCCAAGGTACAGCCGTAGACAGCTCGTGTGACAATCAG
CCCATTCCTCGCCAGCTCCTCCGTCATGATCCTATTGTACGTGGCCTGCA
TTAGATGAACGGCAGCACTCGCCTCGTGCCTCTTGGCGGACAGTCTCTGC
TCATTCTGACGCTTCGTCCTTTCCACCTCGATGTTCTTTCGCTCCGCCTC
CATTGGGTCCATCACAGTCCTTTTGATGAAGAACCACGCAATGACTGGAG
TCACCGAGGCGTAGAAAACTGCAGCTGGTACTATTTCATCGCTTAGATGG
ATGGGGAACACATACGATTGATTTGAACGAAGTATTTTAAATTTAAGTAT
GACTCCAGAAGGCACGCCAATCGATACCGTCGCTGTCACAGAACTGTACT
TGGAAACCTTTTTCTCCACTCCATACTCTCCCATAAAGCCAAAGGTTCCA
ACTTTTGCCGCCAGTTTTAGCTTGAGCTCGTTCTCCATCATTTTGCGGGT
GTAGGAAAGACCGAAGTAAACATGTGGTGTTCCAATCACCAGCGACGAAC
TCAGCGAGTAAGTCTCCTTGGAGTGATCGATCTGTGTGGACATGGAGGAT
TGCGAACCAGCGTTTAGTGTTAGACTACCCATCGTGTGCTTGTCTAGCTG
CACGGCCAGCGTGGAGAACAGGGCGGGTATGACACCTTGGTCACGAAAGT
TCAGATTGG

BO10169.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-PA 1638 CG8531-RA 695..1635 959..19 4705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:35:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-RA 2001 CG8531-RA 849..1789 959..19 4705 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:35:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14257946..14258369 586..163 2120 100 Minus
2R 25286936 2R 14257463..14257718 959..704 1280 100 Minus
2R 25286936 2R 14258430..14258575 164..19 730 100 Minus
2R 25286936 2R 14257772..14257888 703..587 585 100 Minus
Blast to na_te.dros performed on 2015-02-09 03:35:13 has no hits.

BO10169.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:56 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-PA 695..1638 18..959 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:02 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-PA 695..1638 18..959 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:16:12 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 849..1789 19..959 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:24:30 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 849..1789 19..959 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:24:30 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 14258432..14258575 19..162 100   Minus
2R 14257463..14257718 704..959 100 -> Minus
2R 14257772..14257888 587..703 100 -> Minus
2R 14257946..14258369 163..586 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:16:12 Download gff for BO10169.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10144968..10145223 704..959 100 -> Minus
arm_2R 10145277..10145393 587..703 100 -> Minus
arm_2R 10145451..10145874 163..586 100 -> Minus
arm_2R 10145937..10146080 19..162 100   Minus

BO10169.5prime Sequence

951 bp (830 high quality bases) assembled on 2006-04-19

> BO10169.5prime
GAAGTTATCAGTCGTCATGGCATCGGATCACGATGAGTCCGATGCAGAGC
TGGACGAGAACTACTATACGTTTCTGAATTTGCCCCGCGATGCCACTGCG
GAGCAGATCAACACGGCGTACCGGAAACAGAGCCGCATGTTCCACCCGGA
CAAGCACCTGGATCCGGATAGCAAGAAAATGGCTGAGATCATGTTCAACC
GCACGAAGCGTGCCTACGAGGTCCTCTCTGATCCCCAACAGCGGGCCATC
TACGACTCGGTTGGCGAGAAGGGACTACGGACCGAAGGCTGGGAGATTCT
GCACCGAACAAAGACTCCGGATGAGATTCGGGAGGAGTACGAGCGGCTGG
CGCAGGCGGCCGCTGAAAGACGTCTACAGCAGCGGACCAATCCTCGTGGT
AACATTACCATCAACGTGAATGCCACGGAGATCTTCGCACCGTACGACGA
CTCTGAAATGCCGCACGTAGAGATCGGCTCCATGAGCATTGCCCAGTCCA
TCGAGGCTCCGATCACGCGGAAAGATATGATCATCATGAGCGGCAACCTG
TACTCATCCAATGGCAATGGTAGCGGTGGCTTCGTGATCGCCGGCCGACG
GCTGCTCAACAAGGGCTGGATAGAGCTATGTGCCGGAGCGGGCAACGGAT
TCCTTCTGGGTCTTAAGGGTGGCCGCACTCTTAGCCAAAAGCTGACGTTG
AATGGAGGCACCAATCTGAACTTTCGTGACCAAGGTGTCATACCCGCCCT
GTTCTCCACGCTGGCCGTGCAGCTAGACAAGCACACGATGGGTAGTCTAA
CACTAAACGCTGGTTCGCAATCCTCCATGTCCACACAGATCGATCACTCC
AAGGAGACTTACTCGCTGAGTTCGTCGCTGGTGATTGGAACACCACATGT
TTACTTCGGTCTTTCCTACACCCGCAAAATGATGGAGAACGAGCTCAAGC
T

BO10169.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-PA 1638 CG8531-RA 1..935 17..951 4675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-RA 2001 CG8531-RA 154..1089 16..951 4680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14256787..14257365 92..670 2895 100 Plus
2R 25286936 2R 14257420..14257703 668..951 1420 100 Plus
2R 25286936 2R 14256646..14256722 16..92 385 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:19:39 has no hits.

BO10169.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:31:56 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:03 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-PA 1..935 17..951 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:25 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 144..1089 3..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:59:30 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 144..1089 3..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:59:30 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14256636..14256721 3..91 94 -> Plus
2R 14256787..14257363 92..668 100 -> Plus
2R 14257421..14257703 669..951 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:25 Download gff for BO10169.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10144141..10144226 3..91 94 -> Plus
arm_2R 10144292..10144868 92..668 100 -> Plus
arm_2R 10144926..10145208 669..951 100   Plus

BO10169.complete Sequence

1669 bp assembled on 2008-08-15

GenBank Submission: FJ631666

> BO10169.complete
GAAGTTATCAGTCGTCATGGCATCGGATCACGATGAGTCCGATGCAGAGC
TGGACGAGAACTACTATACGTTTCTGAATTTGCCCCGCGATGCCACTGCG
GAGCAGATCAACACGGCGTACCGGAAACAGAGCCGCATGTTCCACCCGGA
CAAGCACCTGGATCCGGATAGCAAGAAAATGGCTGAGATCATGTTCAACC
GCACGAAGCGTGCCTACGAGGTCCTCTCTGATCCCCAACAGCGGGCCATC
TACGACTCGGTTGGCGAGAAGGGACTACGGACCGAAGGCTGGGAGATTCT
GCACCGAACAAAGACTCCGGATGAGATTCGGGAGGAGTACGAGCGGCTGG
CGCAGGCGGCCGCTGAAAGACGTCTACAGCAGCGGACCAATCCTCGTGGT
AACATTACCATCAACGTGAATGCCACGGAGATCTTCGCACCGTACGACGA
CTCTGAAATGCCGCACGTAGAGATCGGCTCCATGAGCATTGCCCAGTCCA
TCGAGGCTCCGATCACGCGGAAAGATATGATCATCATGAGCGGCAACCTG
TACTCATCCAATGGCAATGGTAGCGGTGGCTTCGTGATCGCCGGCCGACG
GCTGCTCAACAAGGGCTGGATAGAGCTATGTGCCGGAGCGGGCAACGGAT
TCCTTCTGGGTCTTAAGGGTGGCCGCACTCTTAGCCAAAAGCTGACGTTG
AATGGAGGCACCAATCTGAACTTTCGTGACCAAGGTGTCATACCCGCCCT
GTTCTCCACGCTGGCCGTGCAGCTAGACAAGCACACGATGGGTAGTCTAA
CACTAAACGCTGGTTCGCAATCCTCCATGTCCACACAGATCGATCACTCC
AAGGAGACTTACTCGCTGAGTTCGTCGCTGGTGATTGGAACACCACATGT
TTACTTCGGTCTTTCCTACACCCGCAAAATGATGGAGAACGAGCTCAAGC
TAAAACTGGCGGCAAAAGTTGGAACCTTTGGCTTTATGGGAGAGTATGGA
GTGGAGAAAAAGGTTTCCAAGTACAGTTCTGTGACAGCGACGGTATCGAT
TGGCGTGCCTTCTGGAGTCATACTTAAATTTAAAATACTTCGTTCAAATC
AATCGTATGTGTTCCCCATCCATCTAAGCGATGAAATAGTACCAGCTGCA
GTTTTCTACGCCTCGGTGACTCCAGTCATTGCGTGGTTCTTCATCAAAAG
GACTGTGATGGACCCAATGGAGGCGGAGCGAAAGAACATCGAGGTGGAAA
GGACGAAGCGTCAGAATGAGCAGAGACTGTCCGCCAAGAGGCACGAGGCG
AGTGCTGCCGTTCATCTAATGCAGGCCACGTACAATAGGATCATGACGGA
GGAGCTGGCGAGGAATGGGCTGATTGTCACACGAGCTGTCTACGGCTGTA
CCTTGGCGGGCGGCAGACAGTTCAAGCCAGAGCAATCGCTCGACGTCACC
GTAGCCATTCAATGCATGGTCAAGAACGGGACCCTGCAGCTGCATGATTC
ATCAAAGAGCGACCTGCCCGGCTTCTATGATCCGGGCATCGGCGAAGACA
AGATTCTGCGGATAGAGTACACCTATCAAAACCAGTTCGAAGTGATTCAC
ATCAAGGACAACGAGGCGCTGCGACTGCCGCTGCGACAACCGCTGTCAGG
AGCAAGCTTTCTAGACCAT

BO10169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-RA 1638 CG8531-PA 1..1635 17..1651 8175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-RA 2001 CG8531-RA 154..1789 16..1651 8180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14256787..14257365 92..670 2895 100 Plus
2R 25286936 2R 14257946..14258369 1084..1507 2120 100 Plus
2R 25286936 2R 14257420..14257718 668..966 1495 100 Plus
2R 25286936 2R 14258430..14258575 1506..1651 730 100 Plus
2R 25286936 2R 14257772..14257888 967..1083 585 100 Plus
2R 25286936 2R 14256646..14256722 16..92 385 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:47:10 has no hits.

BO10169.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:06 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 176..1821 3..1651 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:52:57 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 155..1789 17..1653 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:02:57 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 187..1821 17..1653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:39 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
CG8531-RA 155..1789 17..1653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:39 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14257421..14257718 669..966 100 -> Plus
2R 14257772..14257888 967..1083 100 -> Plus
2R 14256647..14256721 17..91 100 -> Plus
2R 14256787..14257363 92..668 100 -> Plus
2R 14257946..14258369 1084..1507 100 -> Plus
2R 14258432..14258575 1508..1653 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:52:57 Download gff for BO10169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10144152..10144226 17..91 100 -> Plus
arm_2R 10144292..10144868 92..668 100 -> Plus
arm_2R 10144926..10145223 669..966 100 -> Plus
arm_2R 10145277..10145393 967..1083 100 -> Plus
arm_2R 10145451..10145874 1084..1507 100 -> Plus
arm_2R 10145937..10146080 1508..1653 98   Plus

BO10169.pep Sequence

Translation from 16 to 1669

> BO10169.pep
MASDHDESDAELDENYYTFLNLPRDATAEQINTAYRKQSRMFHPDKHLDP
DSKKMAEIMFNRTKRAYEVLSDPQQRAIYDSVGEKGLRTEGWEILHRTKT
PDEIREEYERLAQAAAERRLQQRTNPRGNITINVNATEIFAPYDDSEMPH
VEIGSMSIAQSIEAPITRKDMIIMSGNLYSSNGNGSGGFVIAGRRLLNKG
WIELCAGAGNGFLLGLKGGRTLSQKLTLNGGTNLNFRDQGVIPALFSTLA
VQLDKHTMGSLTLNAGSQSSMSTQIDHSKETYSLSSSLVIGTPHVYFGLS
YTRKMMENELKLKLAAKVGTFGFMGEYGVEKKVSKYSSVTATVSIGVPSG
VILKFKILRSNQSYVFPIHLSDEIVPAAVFYASVTPVIAWFFIKRTVMDP
MEAERKNIEVERTKRQNEQRLSAKRHEASAAVHLMQATYNRIMTEELARN
GLIVTRAVYGCTLAGGRQFKPEQSLDVTVAIQCMVKNGTLQLHDSSKSDL
PGFYDPGIGEDKILRIEYTYQNQFEVIHIKDNEALRLPLRQPLSGASFLD
H

BO10169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8531-PA 545 CG8531-PA 1..545 1..545 2790 100 Plus
CG5001-PC 346 CG5001-PC 1..76 12..91 164 42.5 Plus
CG5001-PD 350 CG5001-PD 1..76 12..91 164 42.5 Plus
CG5001-PA 350 CG5001-PA 1..76 12..91 164 42.5 Plus
CG5001-PB 350 CG5001-PB 1..76 12..91 164 42.5 Plus