Clone Sequence Records
BO10174.3prime Sequence
906 bp (848 high quality bases) assembled on 2006-04-19
> BO10174.3prime
ATGGTCTAGAAAGCTTGCAGGCTGAACGAGGACTGCGCGATGCCGAAGAG
CGCCAGCATGGTGGCAGAGCGGGTCACCACACGGTTGGGCGACGACGAGC
TGGTGGTGAAGCCATGGCTGCAGTGCGTCGTGGCCTGTGTGGACAACGTC
GGCGCCTTGCGGCTGGGTGGTTGCTTTCTTGGGCGGACTGCTGAAGGGAG
ACCCCTTAGATTTGATGCTAGGAGACATCCTCACACTTGCCTTCACACAA
GCGGGTAGTAATGGTATTTCAGCTTTGCCTTGCCAGCTTTGGGACGTAGC
TCCCTTCAGATGAGCCACATGTTCCTTGGCTTTGGTGTCCTCAGTTTGTA
CTGCTTTTGCCTTGGGCGGACTTATTAATCTGTCGGGTAAGACGACAGTT
GAAGGTACTCCCAGCTCTGATTTCAATGCTTGTGGGGGTTCCTTGCATAC
GGTACTGTTCTCCTCCAGAAAGCTTAAGTCGGGAAGCTCCAGTTGTGGGC
AGGGTTTTTCCTCTGAAGGCGAGTGCAGATTTGGCATGGAACTGGAACTC
ACATTTGTCTTAAGGGGGGTTTCTGTGGCAGAAGTCAATTGCTGCAGCAG
TTCCAATATAAATTCGTCATCATTTGGAGGAGGTTTGGACGTTAAGGCCG
CAGGGTGAGAAGGTAGCGTAGCAGCAGGAGATTCAAAAAGTTCAGATTGT
GGAGCAGTGATGGGAAGTGCTGCCTCCGAGTTCAGATCTTCATCAGAGGA
GACCTCATCGTTGTGTGGCCACAAACAGCTCCTGGACTCGCACTTCAGCA
GCTGCTCCTCGAGATTAATGTAAAAGTAGCGCAGCTTGTGATTCCTGCCT
TCACTCTGGCACTCCAGACACTCGTCTCCCGGCTGCAGTCGCTGCATTCT
CAACGA
BO10174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PC | 954 | CG8229-RC | 64..951 | 906..19 | 4415 | 99.8 | Minus |
CG8229-PA | 1080 | CG8229-RA | 64..815 | 906..155 | 3760 | 100 | Minus |
CG33199-PA | 240 | CG33199-RA | 50..188 | 157..19 | 670 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 15:12:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 372..1259 | 906..19 | 4425 | 99.9 | Minus |
CG8229-RD | 1459 | CG8229-RD | 372..1123 | 906..155 | 3760 | 100 | Minus |
CG33199-RB | 1523 | CG33199-RB | 261..399 | 157..19 | 680 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 15:12:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950596 | 155..906 | 3760 | 100 | Plus |
2R | 25286936 | 2R | 8948805..8948943 | 19..157 | 680 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-03 15:12:14 has no hits.
BO10174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:04 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 65..954 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:13 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 65..954 | 15..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:17:31 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 373..1268 | 8..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 18:45:21 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 373..1268 | 8..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 18:45:21 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8948796..8948941 | 8..155 | 95 | <- | Plus |
2R | 8949846..8950595 | 156..905 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:17:31 Download gff for
BO10174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4836301..4836446 | 8..155 | 95 | <- | Plus |
arm_2R | 4837351..4838100 | 156..905 | 100 | | Plus |
BO10174.5prime Sequence
778 bp (777 high quality bases) assembled on 2006-04-19
> BO10174.5prime
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCT
BO10174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PA | 1080 | CG8229-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
CG8229-PC | 954 | CG8229-RC | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 308..1070 | 16..778 | 3815 | 100 | Plus |
CG8229-RD | 1459 | CG8229-RD | 308..1070 | 16..778 | 3815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949898..8950660 | 778..16 | 3815 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:29:55 has no hits.
BO10174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:05 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:15 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-PC | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:43 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RD | 305..1070 | 9..778 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:57 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RD | 305..1070 | 9..778 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:57 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8949898..8950663 | 9..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:43 Download gff for
BO10174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4837403..4838168 | 9..778 | 99 | | Minus |
BO10174.complete Sequence
985 bp assembled on 2008-08-15
GenBank Submission: FJ631667
> BO10174.complete
GAAGTTATCAGTCGACATGCGCATTCTGGGGGAAACCTCTGAGTTTTTCG
GCCGGGCAAACCAAGGACCACCACAATCGTCGTTGAGAATGCAGCGACTG
CAGCCGGGAGACGAGTGTCTGGAGTGCCAGAGTGAAGGCAGGAATCACAA
GCTGCGCTACTTTTACATTAATCTCGAGGAGCAGCTGCTGAAGTGCGAGT
CCAGGAGCTGTTTGTGGCCACACAACGATGAGGTCTCCTCTGATGAAGAT
CTGAACTCGGAGGCAGCACTTCCCATCACTGCTCCACAATCTGAACTTTT
TGAATCTCCTGCTGCTACGCTACCTTCTCACCCTGCGGCCTTAACGTCCA
AACCTCCTCCAAATGATGACGAATTTATATTGGAACTGCTGCAGCAATTG
ACTTCTGCCACAGAAACCCCCCTTAAGACAAATGTGAGTTCCAGTTCCAT
GCCAAATCTGCACTCGCCTTCAGAGGAAAAACCCTGCCCACAACTGGAGC
TTCCCGACTTAAGCTTTCTGGAGGAGAACAGTACCGTATGCAAGGAACCC
CCACAAGCATTGAAATCAGAGCTGGGAGTACCTTCAACTGTCGTCTTACC
CGACAGATTAATAAGTCCGCCCAAGGCAAAAGCAGTACAAACTGAGGACA
CCAAAGCCAAGGAACATGTGGCTCATCTGAAGGGAGCTACGTCCCAAAGC
TGGCAAGGCAAAGCTGAAATACCATTACTACCCGCTTGTGTGAAGGCAAG
TGTGAGGATGTCTCCTAGCATCAAATCTAAGGGGTCTCCCTTCAGCAGTC
CGCCCAAGAAAGCAACCACCCAGCCGCAAGGCGCCGACGTTGTCCACACA
GGCCACGACGCACTGCAGCCATGGCTTCACCACCAGCTCGTCGTCGCCCA
ACCGTGTGGTGACCCGCTCTGCCACCATGCTGGCGCTCTTCGGCATCGCG
CAGTCCTCGTTCAGCCTGCAAGCTTTCTAGACCAT
BO10174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 882 | CG8229-PE | 1..879 | 89..967 | 4380 | 99.9 | Plus |
CG8229-RD | 1008 | CG8229-PD | 1..743 | 89..831 | 3715 | 100 | Plus |
CG33199-RB | 240 | CG33199-PB | 50..188 | 829..967 | 680 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-RE | 1951 | CG8229-RE | 308..1259 | 16..967 | 4745 | 99.9 | Plus |
CG8229-RD | 1459 | CG8229-RD | 308..1123 | 16..831 | 4080 | 100 | Plus |
CG33199-RB | 1523 | CG33199-RB | 261..399 | 829..967 | 680 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8949845..8950660 | 831..16 | 4080 | 100 | Minus |
2R | 25286936 | 2R | 8948805..8948943 | 967..829 | 680 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:10:40 has no hits.
BO10174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:43 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 323..1286 | 9..978 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:47:09 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 309..1259 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:32 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 327..1277 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:06 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8229-RE | 309..1259 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:06 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8948803..8948941 | 831..969 | 97 | <- | Minus |
2R | 8949846..8950659 | 17..830 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:47:09 Download gff for
BO10174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4836308..4836446 | 831..969 | 97 | <- | Minus |
arm_2R | 4837351..4838164 | 17..830 | 100 | | Minus |
BO10174.pep Sequence
Translation from 16 to 985
> BO10174.pep
MRILGETSEFFGRANQGPPQSSLRMQRLQPGDECLECQSEGRNHKLRYFY
INLEEQLLKCESRSCLWPHNDEVSSDEDLNSEAALPITAPQSELFESPAA
TLPSHPAALTSKPPPNDDEFILELLQQLTSATETPLKTNVSSSSMPNLHS
PSEEKPCPQLELPDLSFLEENSTVCKEPPQALKSELGVPSTVVLPDRLIS
PPKAKAVQTEDTKAKEHVAHLKGATSQSWQGKAEIPLLPACVKASVRMSP
SIKSKGSPFSSPPKKATTQPQGADVVHTGHDALQPWLHHQLVVAQPCGDP
LCHHAGALRHRAVLVQPASFLDH
BO10174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8229-PE | 293 | CG8229-PE | 1..293 | 25..317 | 1551 | 100 | Plus |
CG8229-PD | 335 | CG8229-PD | 1..248 | 25..272 | 1295 | 100 | Plus |