Clone Sequence Records
BO10175.3prime Sequence
962 bp (750 high quality bases) assembled on 2006-04-19
> BO10175.3prime
ATGGTCTAGAAAGCTTGCAGATCGGGTGGAGGGGGTGGAGCAGCAGGCCA
TGGACACATCCAGCGGGAGATCCTGCGAGAAGGCAAAGGTCGTGCTAGAA
GTCTCGTTGAAGCCACTGTCCGCCCGATATAGCGGAATTCTGGCTCCTTG
CTGTGGCATCGCAACCGATGGTGGCTCTGCTGGCTGGATGGAGCCCGCAC
CACCTTGTGTCTGATCCGCCTCCTCCTCCAAATTGGCACTAAAGGACTGC
GAGAGATTCTTGCGTTGTGCGGAGCGATGTCTTTTATGTCCGCGCGGAGT
ATCTGAGTTGGAAGAGCTGCAGTTGAAGCTCACGGTCGATAGTTGCATGG
CGTCCGCCTCCTCGTCATCTTCGGATTCAGCCTCCTCTTCCTCCCCCTCA
GTTTCCTCGAAAAGCGGCTGATCCCCTGTCTCGATCACAACCTGTCGCGT
GCTATTCACACGCAGCCGACGAACTCTCTGATTAATGCTGCAATCGGAAT
GCTCCAGTCCGCCGCCCATGGGCGAGGAACTCCTGTCTGGCGTGAACTTC
AATGCCGTGCGCTCTGACAACGTGTCGTGCTGCTCCGTAACGCTGATCTC
TACCTTGGAGTGCACCAATCTCCGACTGAGATGCTCCGACGGGGCAATGG
GCGACGGCAGCTCCAGCTCGTGCATTAGAAGTTTCCTCTTTCCCGAGCAA
GTACCATTATCGGGCGTGCCAGGCGGCAGTCCGCATAGGTTTCTAATGGG
TGAAAGGCAGCCGAAGCTACTTTCCCCGGATGCGGAATCCGACAGTCTGC
CAGCGAACATTGTTTGCTTGCCCTGCGGACTGGAGCCCACCATGGACCTC
GATGGCTCTGCCGTGTCCTGTTCGCCCAAACAATGACATTGTGCAGATCG
AAGAGTTTCCGGCGCATGGAACTATTAAAGATGTCGGGACCACCACTTGA
CTTGCTCCTGCC
BO10175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6897-PA | 1620 | CG6897-RA | 756..1617 | 880..19 | 4310 | 100 | Minus |
| CG6897-PA | 1620 | CG6897-RA | 673..757 | 962..878 | 425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 768..1712 | 962..19 | 4700 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:12:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623517..18624461 | 962..19 | 4675 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:12:14 has no hits.
BO10175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:06 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-PA | 673..1620 | 16..962 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:16 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-PA | 673..1620 | 16..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:21:11 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 768..1718 | 12..962 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:09:30 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 768..1718 | 12..962 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:09:30 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18623517..18624467 | 12..962 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:21:11 Download gff for
BO10175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18616617..18617567 | 12..962 | 99 | | Minus |
BO10175.5prime Sequence
962 bp (792 high quality bases) assembled on 2006-04-19
> BO10175.5prime
GAAGTTATCAGTCGACATGTACAACGACGAGGTGCGAACGCCGCAAGCCC
TCAAGAATCGATACATTACAAATGTGAACGGATTGAAGTGCCGGGCGCGC
CGTAACAGCCACTCGAACAGCAGCAACTCGTCGGCGGCGTCGGCAACGCC
AACGAATGGCGGCAAAGAAAATGGAAAATACAGCCCCCAGATGTCGGGAA
ATGTGTGCACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGAATCCCTTC
GAAGGAGCGATGGCCGATCGTTTACACCTGCCACTGATCGCCAGCCCCTC
ACTTTTCCGCTCGCGGACACCCCAACTCTCGTCCACCCAGTTCGAGTGGA
ACATTGACGAGGTCTCCCAACTAAAACCCGCCGACGTGGAGCCCCATGAA
ACCCAGTTCCACGATTCCCCCGATCCCGAGCAGGAATCCAAGGCCCAGTT
GGCCATCAGTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAGTCCGGTGG
ATTGCCCATTGCGAAAACAGCGCATAATACTCAATTGCAGCGAGGACAAC
ACTCCCATATCGAATAAGTCGCGAAGGATGCGGGATTGCGAGGTGCAAAC
GGAACTTACTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGATGCCCTGC
GTCCGTACTTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCAGGAGCAAG
TCAAGTGGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTCTT
CGATCTGCACAATGTCATTGTTTTGGGCGAACAGGACACGGCAGAGCCAT
CGAGGTCCATGGTGGGCTCCAGTCCGCAGGGCAAGCAAACAATGTTCGCT
GGCAGACTGTCGGATTCCGCATCCGGGGGAAGTAGCTTCGGCTGCCTTTC
ACCCATTAGAAACTATGCGGACTGCCGCCTGGCACGCCCGATAATGGTAC
TTGCTCGGGGAA
BO10175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6897-PA | 1620 | CG6897-RA | 1..897 | 17..913 | 4460 | 99.8 | Plus |
| CG6897-PA | 1620 | CG6897-RA | 898..944 | 913..959 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:00:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 96..1039 | 17..959 | 4680 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 04:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623120..18623788 | 292..959 | 3280 | 99.7 | Plus |
| 3L | 28110227 | 3L | 18622787..18623064 | 17..294 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 04:00:45 has no hits.
BO10175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:07 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:18 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-PA | 1..944 | 17..960 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 06:57:30 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1041 | 17..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 06:33:16 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1041 | 17..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 06:33:16 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18622787..18623064 | 17..294 | 100 | -> | Plus |
| 3L | 18623123..18623790 | 295..962 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 06:57:30 Download gff for
BO10175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18615887..18616164 | 17..294 | 100 | -> | Plus |
| arm_3L | 18616223..18616890 | 295..962 | 99 | | Plus |
BO10175.complete Sequence
1651 bp (1651 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631668
> BO10175.complete
GAAGTTATCAGTCGACATGTACAACGACGAGGTGCGAACGCCGCAAGCCC
TCAAGAATCGATACATTACAAATGTGAACGGATTGAAGTGCCGGGCGCGC
CGTAACAGCCACTCGAACAGCAGCAACTCGTCGGCGGCGTCGGCAACGCC
AACGAATGGCGGCAAAGAAAATGGAAAATACAGCCCCCAGATGTCGGGAA
ATGTGTGCACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGAATCCCTTC
GAAGGAGCGATGGCCGATCGTTTACACCTGCCACTGATCGCCAGCCCCTC
ACTTTTCCGCTCGCGGACACCCCAACTCTCGTCCACCCAGTTCGAGTGGA
ACATTGACGAGGTCTCCCAACTAAAACCCGCCGACGTGGAGCCCCATGAA
ACCCAGTTCCACGATTCCCCCGATCCCGAGCAGGAATCCAAGGCCCAGTT
GGCCATCAGTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAGTCCGGTGG
ATTGCCCATTGCGAAAACAGCGCATAATACTCAATTGCAGCGAGGACAAC
ACTCCCATATCGAATAAGTCGCGAAGGATGCGGGATTGCGAGGTGCAAAC
GGAACTTACTTTGCCGCCGATATTGCCAAAAGCCCTAGAGGATGCCCTGC
GTCCGTACTTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCAGGAGCAAG
TCAAGTGGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTCTT
CGATCTGCACAATGTCATTGTTTTGGGCGAACAGGACACGGCAGAGCCAT
CGAGGTCCATGGTGGGCTCCAGTCCGCAGGGCAAGCAAACAATGTTCGCT
GGCAGACTGTCGGATTCCGCATCCGGGGAAAGTAGCTTCGGCTGCCTTTC
ACCCATTAGAAACCTATGCGGACTGCCGCCTGGCACGCCCGATAATGGTA
CTTGCTCGGGAAAGAGGAAACTTCTAATGCACGAGCTGGAGCTGCCGTCG
CCCATTGCCCCGTCGGAGCATCTCAGTCGGAGATTGGTGCACTCCAAGGT
AGAGATCAGCGTTACGGAGCAGCACGACACGTTGTCAGAGCGCACGGCAT
TGAAGTTCACGCCAGACAGGAGTTCCTCGCCCATGGGCGGCGGACTGGAG
CATTCCGATTGCAGCATTAATCAGAGAGTTCGTCGGCTGCGTGTGAATAG
CACGCGACAGGTTGTGATCGAGACAGGGGATCAGCCGCTTTTCGAGGAAA
CTGAGGGGGAGGAAGAGGAGGCTGAATCCGAAGATGACGAGGAGGCGGAC
GCCATGCAACTATCGACCGTGAGCTTCAACTGCAGCTCTTCCAACTCAGA
TACTCCGCGCGGACATAAAAGACATCGCTCCGCACAACGCAAGAATCTCT
CGCAGTCCTTTAGTGCCAATTTGGAGGAGGAGGCGGATCAGACACAAGGT
GGTGCGGGCTCCATCCAGCCAGCAGAGCCACCATCGGTTGCGATGCCACA
GCAAGGAGCCAGAATTCCGCTATATCGGGCGGACAGTGGCTTCAACGAGA
CTTCTAGCACGACCTTTGCCTTCTCGCAGGATCTCCCGCTGGATGTGTCC
ATGGCCTGCTGCTCCACCCCCTCCACCCGATCTGCAAGCTTTCTAGACCA
T
BO10175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:06:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 1620 | CG6897-PA | 1..1617 | 17..1633 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 96..1712 | 17..1633 | 8085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623120..18624461 | 292..1633 | 6710 | 100 | Plus |
| 3L | 28110227 | 3L | 18622787..18623064 | 17..294 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:06:02 has no hits.
BO10175.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:36 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-RA | 1..1620 | 17..1636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:24 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 94..1716 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:39 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1712 | 17..1635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:36 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-RA | 94..1716 | 17..1640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:46 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1712 | 17..1635 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:46 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18622787..18623064 | 17..294 | 100 | -> | Plus |
| 3L | 18623123..18624461 | 295..1635 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:39 Download gff for
BO10175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18615887..18616164 | 17..294 | 100 | -> | Plus |
| arm_3L | 18616223..18617561 | 295..1635 | 99 | | Plus |
BO10175.pep Sequence
Translation from 16 to 1651
> BO10175.pep
MYNDEVRTPQALKNRYITNVNGLKCRARRNSHSNSSNSSAASATPTNGGK
ENGKYSPQMSGNVCTPPPKRLHKVRNPFEGAMADRLHLPLIASPSLFRSR
TPQLSSTQFEWNIDEVSQLKPADVEPHETQFHDSPDPEQESKAQLAISAF
FKESLIVPSPVDCPLRKQRIILNCSEDNTPISNKSRRMRDCEVQTELTLP
PILPKALEDALRPYFQPHLAGRLSGRSKSSGGPDIFNSSMRRKLFDLHNV
IVLGEQDTAEPSRSMVGSSPQGKQTMFAGRLSDSASGESSFGCLSPIRNL
CGLPPGTPDNGTCSGKRKLLMHELELPSPIAPSEHLSRRLVHSKVEISVT
EQHDTLSERTALKFTPDRSSSPMGGGLEHSDCSINQRVRRLRVNSTRQVV
IETGDQPLFEETEGEEEEAESEDDEEADAMQLSTVSFNCSSSNSDTPRGH
KRHRSAQRKNLSQSFSANLEEEADQTQGGAGSIQPAEPPSVAMPQQGARI
PLYRADSGFNETSSTTFAFSQDLPLDVSMACCSTPSTRSASFLDH
BO10175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-PA | 539 | CG6897-PA | 1..539 | 1..539 | 2801 | 100 | Plus |
