Clone BO10176 Report

Search the DGRC for BO10176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptlok-RB
Protein status:BO10176.pep: validated full length
Sequenced Size:1411

Clone Sequence Records

BO10176.5prime Sequence

854 bp (853 high quality bases) assembled on 2006-04-19

> BO10176.5prime
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATC

BO10176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10895-PB 1380 lok-RB 1..838 17..854 4190 100 Plus
CG10895-PC 1380 lok-RC 1..838 17..854 4190 100 Plus
CG10895-PA 1431 lok-RA 187..889 152..854 3515 100 Plus
CG10895-PA 1431 lok-RA 1..136 17..152 680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RD 2310 CG10895-RD 381..1218 17..854 4190 100 Plus
lok-RC 2163 CG10895-RC 381..1218 17..854 4190 100 Plus
lok-RB 2105 CG10895-RB 320..1157 17..854 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:46
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062732..20063168 418..854 2185 100 Plus
2L 23513712 2L 20062147..20062306 152..311 800 100 Plus
2L 23513712 2L 20061877..20062012 17..152 680 100 Plus
2L 23513712 2L 20062542..20062653 308..419 560 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:13:50 has no hits.

BO10176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:09 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-PB 1..838 17..854 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:20 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10895-PC 1..838 17..854 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:49 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-RB 315..1157 12..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:47 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
lok-RB 315..1157 12..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:47 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20061872..20062012 12..152 98 -> Plus
2L 20062148..20062305 153..310 100 -> Plus
2L 20062545..20062653 311..419 100 -> Plus
2L 20062734..20063168 420..854 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:49 Download gff for BO10176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20061872..20062012 12..152 98 -> Plus
arm_2L 20062148..20062305 153..310 100 -> Plus
arm_2L 20062545..20062653 311..419 100 -> Plus
arm_2L 20062734..20063168 420..854 100   Plus

BO10176.3prime Sequence

855 bp (812 high quality bases) assembled on 2006-04-19

> BO10176.3prime
ATGGTCTAGAAAGCTTGCGCGTCGCGATCGCTTGGTGGGTGGCTCAAGGA
AGTTCTCCTCCTCGATTTCCATGCCATCGAGCTTCATCAGCCTCTTCGCC
TTCTGCAGCATGGGCGCATCGCGCAGCCAGCTGCTCTGCAAAACGTCGTC
GATTGAGGGTCGCCTCTCGGGATCCACAATGAGCATTTGGTTGATCAGCA
GCTTGGCGCGCTGCGAGACACTCTTCCAAGAAGGGTGTCCATACGCGAAT
CTGCCCTTCTTTATTTGCTGGGCCGCCGGGGTGCCGTACTCGTCCGAAAA
GGGCAGAGTGCCACTCAGGCAAGTAAATAGCACCACTCCCAAGCTCCAAA
TGTCCACTTTCTTGGTGTAGGCTTCTCGGCCGCCGGTAATCAGCACCTCA
GGGGCCACGTAGAGAGGTGTGCCACAGAGCGTGCGCATAACCGAGTCCTT
CTGCACAAACTTACTCAGCCCGAAATCGGAGACCTTCAGTAGGGTCTCCT
CGTCATTGGTCTCCAGCAAAACATTGTCAGGCTTAAGGTCACGATGGGTG
ATGCCCCGATCGTGTAGGTACTTGACGGCATGGCACATTTGGTAAAAGTA
AAGCTTCGAGATGTCCTCGCTAAGTAGTTTGTTGCTGATGATCCGGTTAA
GCAGGTCGCCGCCGCGCATAAACTCCAGCACCATATACACAGAATCCGGC
TTGTCCACGATGTCGTGCATGCGAACCACGCACGGATGTGAAAGATTCTT
CATAATCTTGGCTTCGTTCAGCACCCGGTCGGGATCACTGAAATTGGTAC
TGGGTCGCGCCCCAGAGAGCATATTCTTCTTAACGATTTTCATCGCAAAC
TGCTG

BO10176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10895-PA 1431 lok-RA 592..1428 855..19 4185 100 Minus
CG10895-PB 1380 lok-RB 541..1377 855..19 4185 100 Minus
CG10895-PC 1380 lok-RC 541..1377 855..19 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 2163 CG10895-RC 921..1757 855..19 4185 100 Minus
lok-RB 2105 CG10895-RB 860..1696 855..19 4185 100 Minus
lok-RA 2231 CG10895-RA 986..1822 855..19 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062871..20063172 855..554 1510 100 Minus
2L 23513712 2L 20063671..20063972 320..19 1510 100 Minus
2L 23513712 2L 20063377..20063612 555..320 1180 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:34:40 has no hits.

BO10176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:08 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-PB 541..1380 18..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:19 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10895-PC 541..1380 18..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:10 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-RA 986..1830 9..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:25 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
lok-RA 986..1830 9..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:25 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20062871..20063171 555..855 100 -> Minus
2L 20063378..20063612 320..554 100 -> Minus
2L 20063672..20063980 9..319 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:10 Download gff for BO10176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20062871..20063171 555..855 100 -> Minus
arm_2L 20063378..20063612 320..554 100 -> Minus
arm_2L 20063672..20063980 9..319 98   Minus

BO10176.complete Sequence

1411 bp (1411 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631669

> BO10176.complete
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACCTTAAGCCTGACAATGTTTTGCTGGA
GACCAATGACGAGGAGACCCTACTGAAGGTCTCCGATTTCGGGCTGAGTA
AGTTTGTGCAGAAGGACTCGGTTATGCGCACGCTCTGTGGCACACCTCTC
TACGTGGCCCCTGAGGTGCTGATTACCGGCGGCCGAGAAGCCTACACCAA
GAAAGTGGACATTTGGAGCTTGGGAGTGGTGCTATTTACTTGCCTGAGTG
GCACTCTGCCCTTTTCGGACGAGTACGGCACCCCGGCGGCCCAGCAAATA
AAGAAGGGCAGATTCGCGTATGGACACCCTTCTTGGAAGAGTGTCTCGCA
GCGCGCCAAGCTGCTGATCAACCAAATGCTCATTGTGGATCCCGAGAGGC
GACCCTCAATCGACGACGTTTTGCAGAGCAGCTGGCTGCGCGATGCGCCC
ATGCTGCAGAAGGCGAAGAGGCTGATGAAGCTCGATGGCATGGAAATCGA
GGAGGAGAACTTCCTTGAGCCACCCACCAAGCGATCGCGACGCGCAAGCT
TTCTAGACCAT

BO10176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 1380 CG10895-PC 1..1377 17..1393 6885 100 Plus
lok-RB 1380 CG10895-PB 1..1377 17..1393 6885 100 Plus
lok-RA 1431 CG10895-PA 187..1428 152..1393 6210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
lok-RC 2163 CG10895-RC 381..1757 17..1393 6885 100 Plus
lok-RB 2105 CG10895-RB 320..1696 17..1393 6885 100 Plus
lok-RA 2231 CG10895-RA 581..1822 152..1393 6210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20062732..20063172 418..858 2205 100 Plus
2L 23513712 2L 20063671..20063972 1092..1393 1510 100 Plus
2L 23513712 2L 20063377..20063612 857..1092 1180 100 Plus
2L 23513712 2L 20062147..20062306 152..311 800 100 Plus
2L 23513712 2L 20061877..20062012 17..152 680 100 Plus
2L 23513712 2L 20062542..20062653 308..419 560 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:33 has no hits.

BO10176.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:27 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 1..1380 17..1394 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:12 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 396..1785 12..1403 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:07 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RB 320..1696 17..1395 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:27 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RC 396..1785 12..1403 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:02 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
lok-RB 320..1696 17..1395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:02 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20061877..20062012 17..152 100 -> Plus
2L 20062148..20062305 153..310 100 -> Plus
2L 20062545..20062653 311..419 100 -> Plus
2L 20062734..20063171 420..857 100 -> Plus
2L 20063378..20063612 858..1092 100 -> Plus
2L 20063672..20063972 1093..1395 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:07 Download gff for BO10176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20061877..20062012 17..152 100 -> Plus
arm_2L 20062148..20062305 153..310 100 -> Plus
arm_2L 20062545..20062653 311..419 100 -> Plus
arm_2L 20062734..20063171 420..857 100 -> Plus
arm_2L 20063378..20063612 858..1092 100 -> Plus
arm_2L 20063672..20063972 1093..1395 99   Plus

BO10176.pep Sequence

Translation from 16 to 1411

> BO10176.pep
MARDTQGTQGTQSQASNIWTQVESQPMEKIVWGRLYGKNIKIKSLDLNND
EFTAGRGEANDLILTLNDLPEKILTRISKVHFIIKRANCELTNPVYIQDL
SRNGTFVNNEKIGTNRMRILKNDDVISLSHPTYKAFVFKDLSPNESIGLP
EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPST
NFSDPDRVLNEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLN
RIISNKLLSEDISKLYFYQMCHAVKYLHDRGITHRDLKPDNVLLETNDEE
TLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGREAYTKKVDIW
SLGVVLFTCLSGTLPFSDEYGTPAAQQIKKGRFAYGHPSWKSVSQRAKLL
INQMLIVDPERRPSIDDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENFL
EPPTKRSRRASFLDH

BO10176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
lok-PC 459 CG10895-PC 1..459 1..459 2383 100 Plus
lok-PB 459 CG10895-PB 1..459 1..459 2383 100 Plus
lok-PA 476 CG10895-PA 1..476 1..459 2355 96.4 Plus
lok-PD 284 CG10895-PD 1..284 1..284 1465 99.3 Plus
CaMKI-PI 390 CG1495-PI 27..287 153..424 461 35.9 Plus