Clone Sequence Records
BO10176.5prime Sequence
854 bp (853 high quality bases) assembled on 2006-04-19
> BO10176.5prime
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATC
BO10176.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10895-PB | 1380 | lok-RB | 1..838 | 17..854 | 4190 | 100 | Plus |
CG10895-PC | 1380 | lok-RC | 1..838 | 17..854 | 4190 | 100 | Plus |
CG10895-PA | 1431 | lok-RA | 187..889 | 152..854 | 3515 | 100 | Plus |
CG10895-PA | 1431 | lok-RA | 1..136 | 17..152 | 680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RD | 2310 | CG10895-RD | 381..1218 | 17..854 | 4190 | 100 | Plus |
lok-RC | 2163 | CG10895-RC | 381..1218 | 17..854 | 4190 | 100 | Plus |
lok-RB | 2105 | CG10895-RB | 320..1157 | 17..854 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062732..20063168 | 418..854 | 2185 | 100 | Plus |
2L | 23513712 | 2L | 20062147..20062306 | 152..311 | 800 | 100 | Plus |
2L | 23513712 | 2L | 20061877..20062012 | 17..152 | 680 | 100 | Plus |
2L | 23513712 | 2L | 20062542..20062653 | 308..419 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:13:50 has no hits.
BO10176.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:09 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-PB | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:20 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10895-PC | 1..838 | 17..854 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:49 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 315..1157 | 12..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:47 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 315..1157 | 12..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:47 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20061872..20062012 | 12..152 | 98 | -> | Plus |
2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
2L | 20062734..20063168 | 420..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:49 Download gff for
BO10176.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20061872..20062012 | 12..152 | 98 | -> | Plus |
arm_2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
arm_2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
arm_2L | 20062734..20063168 | 420..854 | 100 | | Plus |
BO10176.3prime Sequence
855 bp (812 high quality bases) assembled on 2006-04-19
> BO10176.3prime
ATGGTCTAGAAAGCTTGCGCGTCGCGATCGCTTGGTGGGTGGCTCAAGGA
AGTTCTCCTCCTCGATTTCCATGCCATCGAGCTTCATCAGCCTCTTCGCC
TTCTGCAGCATGGGCGCATCGCGCAGCCAGCTGCTCTGCAAAACGTCGTC
GATTGAGGGTCGCCTCTCGGGATCCACAATGAGCATTTGGTTGATCAGCA
GCTTGGCGCGCTGCGAGACACTCTTCCAAGAAGGGTGTCCATACGCGAAT
CTGCCCTTCTTTATTTGCTGGGCCGCCGGGGTGCCGTACTCGTCCGAAAA
GGGCAGAGTGCCACTCAGGCAAGTAAATAGCACCACTCCCAAGCTCCAAA
TGTCCACTTTCTTGGTGTAGGCTTCTCGGCCGCCGGTAATCAGCACCTCA
GGGGCCACGTAGAGAGGTGTGCCACAGAGCGTGCGCATAACCGAGTCCTT
CTGCACAAACTTACTCAGCCCGAAATCGGAGACCTTCAGTAGGGTCTCCT
CGTCATTGGTCTCCAGCAAAACATTGTCAGGCTTAAGGTCACGATGGGTG
ATGCCCCGATCGTGTAGGTACTTGACGGCATGGCACATTTGGTAAAAGTA
AAGCTTCGAGATGTCCTCGCTAAGTAGTTTGTTGCTGATGATCCGGTTAA
GCAGGTCGCCGCCGCGCATAAACTCCAGCACCATATACACAGAATCCGGC
TTGTCCACGATGTCGTGCATGCGAACCACGCACGGATGTGAAAGATTCTT
CATAATCTTGGCTTCGTTCAGCACCCGGTCGGGATCACTGAAATTGGTAC
TGGGTCGCGCCCCAGAGAGCATATTCTTCTTAACGATTTTCATCGCAAAC
TGCTG
BO10176.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10895-PA | 1431 | lok-RA | 592..1428 | 855..19 | 4185 | 100 | Minus |
CG10895-PB | 1380 | lok-RB | 541..1377 | 855..19 | 4185 | 100 | Minus |
CG10895-PC | 1380 | lok-RC | 541..1377 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:34:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 2163 | CG10895-RC | 921..1757 | 855..19 | 4185 | 100 | Minus |
lok-RB | 2105 | CG10895-RB | 860..1696 | 855..19 | 4185 | 100 | Minus |
lok-RA | 2231 | CG10895-RA | 986..1822 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062871..20063172 | 855..554 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 20063671..20063972 | 320..19 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 20063377..20063612 | 555..320 | 1180 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:34:40 has no hits.
BO10176.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:08 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-PB | 541..1380 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:19 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10895-PC | 541..1380 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:10 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RA | 986..1830 | 9..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:49:25 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RA | 986..1830 | 9..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:49:25 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20062871..20063171 | 555..855 | 100 | -> | Minus |
2L | 20063378..20063612 | 320..554 | 100 | -> | Minus |
2L | 20063672..20063980 | 9..319 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:10 Download gff for
BO10176.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20062871..20063171 | 555..855 | 100 | -> | Minus |
arm_2L | 20063378..20063612 | 320..554 | 100 | -> | Minus |
arm_2L | 20063672..20063980 | 9..319 | 98 | | Minus |
BO10176.complete Sequence
1411 bp (1411 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631669
> BO10176.complete
GAAGTTATCAGTCGACATGGCACGCGACACACAAGGAACGCAGGGAACCC
AGAGTCAGGCCTCCAATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAG
AAGATAGTCTGGGGTCGATTGTACGGCAAGAACATTAAGATCAAATCGCT
GGATCTCAACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACT
TGATCCTCACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCC
AAAGTGCATTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGT
TTATATTCAGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAA
TTGGCACAAACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTG
TCCCACCCAACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGA
GTCGATCGGGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCA
AGCTGGGATCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGC
ACCTGCCAGCAGTTTGCGATGAAAATCGTTAAGAAGAATATGCTCTCTGG
GGCGCGACCCAGTACCAATTTCAGTGATCCCGACCGGGTGCTGAACGAAG
CCAAGATTATGAAGAATCTTTCACATCCGTGCGTGGTTCGCATGCACGAC
ATCGTGGACAAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGG
CGGCGACCTGCTTAACCGGATCATCAGCAACAAACTACTTAGCGAGGACA
TCTCGAAGCTTTACTTTTACCAAATGTGCCATGCCGTCAAGTACCTACAC
GATCGGGGCATCACCCATCGTGACCTTAAGCCTGACAATGTTTTGCTGGA
GACCAATGACGAGGAGACCCTACTGAAGGTCTCCGATTTCGGGCTGAGTA
AGTTTGTGCAGAAGGACTCGGTTATGCGCACGCTCTGTGGCACACCTCTC
TACGTGGCCCCTGAGGTGCTGATTACCGGCGGCCGAGAAGCCTACACCAA
GAAAGTGGACATTTGGAGCTTGGGAGTGGTGCTATTTACTTGCCTGAGTG
GCACTCTGCCCTTTTCGGACGAGTACGGCACCCCGGCGGCCCAGCAAATA
AAGAAGGGCAGATTCGCGTATGGACACCCTTCTTGGAAGAGTGTCTCGCA
GCGCGCCAAGCTGCTGATCAACCAAATGCTCATTGTGGATCCCGAGAGGC
GACCCTCAATCGACGACGTTTTGCAGAGCAGCTGGCTGCGCGATGCGCCC
ATGCTGCAGAAGGCGAAGAGGCTGATGAAGCTCGATGGCATGGAAATCGA
GGAGGAGAACTTCCTTGAGCCACCCACCAAGCGATCGCGACGCGCAAGCT
TTCTAGACCAT
BO10176.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 1380 | CG10895-PC | 1..1377 | 17..1393 | 6885 | 100 | Plus |
lok-RB | 1380 | CG10895-PB | 1..1377 | 17..1393 | 6885 | 100 | Plus |
lok-RA | 1431 | CG10895-PA | 187..1428 | 152..1393 | 6210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-RC | 2163 | CG10895-RC | 381..1757 | 17..1393 | 6885 | 100 | Plus |
lok-RB | 2105 | CG10895-RB | 320..1696 | 17..1393 | 6885 | 100 | Plus |
lok-RA | 2231 | CG10895-RA | 581..1822 | 152..1393 | 6210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20062732..20063172 | 418..858 | 2205 | 100 | Plus |
2L | 23513712 | 2L | 20063671..20063972 | 1092..1393 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 20063377..20063612 | 857..1092 | 1180 | 100 | Plus |
2L | 23513712 | 2L | 20062147..20062306 | 152..311 | 800 | 100 | Plus |
2L | 23513712 | 2L | 20061877..20062012 | 17..152 | 680 | 100 | Plus |
2L | 23513712 | 2L | 20062542..20062653 | 308..419 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:33 has no hits.
BO10176.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:27 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 1..1380 | 17..1394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:12 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 396..1785 | 12..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:07 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 320..1696 | 17..1395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:27 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RC | 396..1785 | 12..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:02 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lok-RB | 320..1696 | 17..1395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:02 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
2L | 20063378..20063612 | 858..1092 | 100 | -> | Plus |
2L | 20063672..20063972 | 1093..1395 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:07 Download gff for
BO10176.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20061877..20062012 | 17..152 | 100 | -> | Plus |
arm_2L | 20062148..20062305 | 153..310 | 100 | -> | Plus |
arm_2L | 20062545..20062653 | 311..419 | 100 | -> | Plus |
arm_2L | 20062734..20063171 | 420..857 | 100 | -> | Plus |
arm_2L | 20063378..20063612 | 858..1092 | 100 | -> | Plus |
arm_2L | 20063672..20063972 | 1093..1395 | 99 | | Plus |
BO10176.pep Sequence
Translation from 16 to 1411
> BO10176.pep
MARDTQGTQGTQSQASNIWTQVESQPMEKIVWGRLYGKNIKIKSLDLNND
EFTAGRGEANDLILTLNDLPEKILTRISKVHFIIKRANCELTNPVYIQDL
SRNGTFVNNEKIGTNRMRILKNDDVISLSHPTYKAFVFKDLSPNESIGLP
EEINKTYYVNRKLGSGAYGLVRLVYDTRTCQQFAMKIVKKNMLSGARPST
NFSDPDRVLNEAKIMKNLSHPCVVRMHDIVDKPDSVYMVLEFMRGGDLLN
RIISNKLLSEDISKLYFYQMCHAVKYLHDRGITHRDLKPDNVLLETNDEE
TLLKVSDFGLSKFVQKDSVMRTLCGTPLYVAPEVLITGGREAYTKKVDIW
SLGVVLFTCLSGTLPFSDEYGTPAAQQIKKGRFAYGHPSWKSVSQRAKLL
INQMLIVDPERRPSIDDVLQSSWLRDAPMLQKAKRLMKLDGMEIEEENFL
EPPTKRSRRASFLDH
BO10176.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lok-PC | 459 | CG10895-PC | 1..459 | 1..459 | 2383 | 100 | Plus |
lok-PB | 459 | CG10895-PB | 1..459 | 1..459 | 2383 | 100 | Plus |
lok-PA | 476 | CG10895-PA | 1..476 | 1..459 | 2355 | 96.4 | Plus |
lok-PD | 284 | CG10895-PD | 1..284 | 1..284 | 1465 | 99.3 | Plus |
CaMKI-PI | 390 | CG1495-PI | 27..287 | 153..424 | 461 | 35.9 | Plus |