Clone Sequence Records
BO10177.3prime Sequence
983 bp (807 high quality bases) assembled on 2006-04-19
> BO10177.3prime
ATGGTCTAGAAAGCTTGCGGTCTTCAACCAATTTCTCAAGGGTACGGAGG
CCGCCTCGCTGCGCTCCCGCTTTAGATGAGCGTGGTCCTTCTTTCGTGGT
AGCAATGGCGGTGGAATTCCCGGATTGATCTGGTCAGAAGCCAGCGCAAA
AGAGGGAGGGCTTCTAACTGCTTGCTTTTCTGATTTAGGTATCTGTGAGT
GAGGCGTTAAGTTGGAGGGAGATTGATGACCGATGTTCAAACACGATAAA
CTGTTGTTGCCAGTCAGGGATAATTCTTCTCCGTCCAGTCCTACTTGCTC
TACTAACTGCTCCTCTTCTATTTCGTCGTCCTCTTCCAAAGAGTGTGTCG
TTTGGATAGGCGTTTGATGCATTGTTCCATAATGAAGGTTTAAAGATTTT
GCCCGTCGTATTCCGAGGGCACCGGAACCCACAACTCCGCCGCCACCCCC
ATTCGGAAATGGCTTTCGGAATCCATGGGATCGGTCATTTTCGTAAATAA
TGTCGTTACTGATTGGCCGCTGGTTATAACAACCGGCCAGAGCTTGACGA
AGGCACTTGTTTTCGGATTCCAGATGTGAGAGGCGTTTGTTAGTCTCCTT
TTTCTCCAGTCGCAACTGCATTACTTGGGTCTTTAGATCGTCTATATCTC
TCAGAATTCGGACATTTCCCTCGTTTAAGGAACACTGACGTTCTTCAACC
ATTAATTTTACTCGACTTAGCAGTGCATCTTCGCGTATGCGCGCTGCCTC
CTTCACTTCCCGCACGACATCCGTCATCATTCCTGGAGTGTAGGCGCCTG
AGTGAAATGTGGGCGCTGGGCTGTGTGTCCCTCCCCATCCACTGCCAAGA
ATAAGAGGTTGACTTTGTGTGCTTAGCCCGCTTAAGCTATCTCTACNGTG
CCGCATGCCCCCAAAGCTACACCTGCCCAGTGCTGGCTATTAGGGGAGTG
CTTTAAAGCTTCGATATCAACTTTTGTATTATG
BO10177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-PB | 1959 | CG9795-RB | 1058..1956 | 917..19 | 4451 | 99.7 | Minus |
| CG9795-PA | 1506 | CG9795-RA | 605..1503 | 917..19 | 4451 | 99.7 | Minus |
| CG9795-PC | 2070 | CG9795-RC | 1169..2067 | 917..19 | 4451 | 99.7 | Minus |
| CG9795-PD | 2100 | CG9795-RD | 1058..1933 | 917..42 | 4336 | 99.7 | Minus |
| CG9795-PB | 1959 | CG9795-RB | 991..1057 | 983..917 | 335 | 100 | Minus |
| CG9795-PA | 1506 | CG9795-RA | 538..604 | 983..917 | 335 | 100 | Minus |
| CG9795-PC | 2070 | CG9795-RC | 1102..1168 | 983..917 | 335 | 100 | Minus |
| CG9795-PD | 2100 | CG9795-RD | 991..1057 | 983..917 | 335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RA | 2693 | CG9795-RA | 1354..2319 | 983..19 | 4779 | 99.7 | Minus |
| CG9795-RF | 2390 | CG9795-RF | 1206..2148 | 983..42 | 4664 | 99.7 | Minus |
| CG9795-RE | 2573 | CG9795-RE | 1206..2148 | 983..42 | 4664 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4324871..4325461 | 632..42 | 2955 | 100 | Minus |
| 3R | 32079331 | 3R | 4324335..4324511 | 972..797 | 809 | 98.3 | Minus |
| 3R | 32079331 | 3R | 4324584..4324672 | 801..713 | 445 | 100 | Minus |
| 3R | 32079331 | 3R | 4324729..4324811 | 713..631 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:56:16 has no hits.
BO10177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:10 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-PB | 991..1959 | 15..983 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:21 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-PC | 1102..2070 | 15..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 09:38:34 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RA | 1354..2323 | 14..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:32:40 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RA | 1354..2323 | 14..983 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:32:40 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4324326..4324510 | 798..983 | 96 | -> | Minus |
| 3R | 4324588..4324672 | 713..797 | 100 | -> | Minus |
| 3R | 4324730..4324811 | 631..712 | 100 | -> | Minus |
| 3R | 4324873..4325461 | 42..630 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 09:38:34 Download gff for
BO10177.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 150048..150232 | 798..983 | 96 | -> | Minus |
| arm_3R | 150310..150394 | 713..797 | 100 | -> | Minus |
| arm_3R | 150452..150533 | 631..712 | 100 | -> | Minus |
| arm_3R | 150595..151183 | 42..630 | 100 | -> | Minus |
BO10177.5prime Sequence
918 bp (825 high quality bases) assembled on 2006-04-19
> BO10177.5prime
GAAGTTATCAGTCGTCATGTTTTTGACTCAACAGCAGCAGCTGCCGCAGC
TTAAACAGCAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGAACC
CAGCCTTACGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACAGCG
CAATTCGAACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCCAGA
GCCTTAACAGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCTCCC
CTGAACAACATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGGAACC
GAATTCGACGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTACCA
AGGGATTTCGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAATGAC
TCTAAGCTGAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAACAA
TGGCAGTGGCTGTGATCTGGCACATCAAAACAAATTTTTCGCGGCTCTAA
TGGAACAAATAAACATATTGCACGACACCAATTCCAAGATCTGCCGGAAT
TTGCATAATACAAAAGTTGATATCGAAGCTTTAAAGCACTCCCCTAATAG
CCAGCACTGGGCAGGTGTAGGCTTTGGGGGCATGCGGCACCGTAGAGATA
GCTTAAGCGGGCTAAGCACACAAAGTCAACCTCTTATTCTTGGCAGTGGA
TTGGGAGGGACACACAGCCCAGCGCCCACATTTCACTCAGGCGCCTACAC
TCCAGGAATGATGACGGATGTCGTGCGGGAAGTGAAGGAGGCAGCGCGCA
TACGCGAAGATGCACTGCTAAGTCGAGTAAAATAATGGTTGAAGAACGTC
AGTGTTCCTTAAACGAGGGAAATGTCCGAATTCTGAGAGATATAGACGAT
CTAAAGACCCAAGTAATG
BO10177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-PB | 1959 | CG9795-RB | 454..1270 | 17..833 | 4085 | 100 | Plus |
| CG9795-PA | 1506 | CG9795-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
| CG9795-PC | 2070 | CG9795-RC | 565..1381 | 17..833 | 4085 | 100 | Plus |
| CG9795-PD | 2100 | CG9795-RD | 454..1270 | 17..833 | 4085 | 100 | Plus |
| CG9795-PB | 1959 | CG9795-RB | 1271..1356 | 833..918 | 430 | 100 | Plus |
| CG9795-PA | 1506 | CG9795-RA | 818..903 | 833..918 | 430 | 100 | Plus |
| CG9795-PC | 2070 | CG9795-RC | 1382..1467 | 833..918 | 430 | 100 | Plus |
| CG9795-PD | 2100 | CG9795-RD | 1271..1356 | 833..918 | 430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RF | 2390 | CG9795-RF | 669..1571 | 17..918 | 4490 | 99.9 | Plus |
| CG9795-RE | 2573 | CG9795-RE | 669..1571 | 17..918 | 4490 | 99.9 | Plus |
| CG9795-RD | 2825 | CG9795-RD | 635..1537 | 17..918 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4323952..4324164 | 354..566 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 4323687..4323889 | 152..354 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 4324335..4324511 | 565..741 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 4323488..4323622 | 17..151 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4324584..4324672 | 737..825 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 4324734..4324811 | 829..906 | 375 | 98.7 | Plus |
Blast to na_te.dros performed 2015-02-10 20:28:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6849 | 29..84 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 29..82 | 171 | 79.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 29..90 | 155 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 29..84 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 29..85 | 150 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6848 | 29..104 | 146 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 29..85 | 141 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6858 | 29..81 | 139 | 73.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 29..102 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6911 | 29..95 | 135 | 70 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 106..30 | 133 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 29..82 | 128 | 74.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 82..28 | 122 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 29..81 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 29..71 | 116 | 74.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1112..1162 | 29..82 | 110 | 70.4 | Plus |
BO10177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:11 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-PC | 560..1467 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:24 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-PC | 560..1467 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:45:10 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 630..1537 | 10..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:37:11 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RD | 630..1537 | 10..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:37:11 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4323485..4323622 | 14..151 | 97 | -> | Plus |
| 3R | 4323687..4323889 | 152..354 | 100 | -> | Plus |
| 3R | 4323953..4324164 | 355..566 | 100 | -> | Plus |
| 3R | 4324337..4324510 | 567..740 | 100 | -> | Plus |
| 3R | 4324588..4324672 | 741..825 | 100 | -> | Plus |
| 3R | 4324730..4324811 | 826..906 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:45:10 Download gff for
BO10177.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 150310..150394 | 741..825 | 100 | -> | Plus |
| arm_3R | 149207..149344 | 14..151 | 97 | -> | Plus |
| arm_3R | 149409..149611 | 152..354 | 100 | -> | Plus |
| arm_3R | 149675..149886 | 355..566 | 100 | -> | Plus |
| arm_3R | 150059..150232 | 567..740 | 100 | -> | Plus |
| arm_3R | 150452..150533 | 826..906 | 98 | -> | Plus |
BO10177.complete Sequence
1537 bp assembled on 2008-08-15
GenBank Submission: FJ631670
> BO10177.complete
GAAGTTATCAGTCGTCATGTTTTTGACTCAACAGCAGCAGCTGCCGCAGC
TTAAACAGCAACTACAGCAGCAGAGGCAACAGGAATTTTCGAAGCGAACC
CAGCCTTACGGAGTGGGTCCAGGCACACCGTTTAGCCTGGGGATACAGCG
CAATTCGAACTCTCTTAGCCATCGATATCCGATGCTCTTCCCACCCCAGA
GCCTTAACAGCTATGGTGATGGTGGCCAGGAGTTTGCAAGCTTGCCTCCC
CTGAACAACATGATGGGAGGGCCGGAAGGGCTTGGGTGCGATCAGGAACC
GAATTCGACGGATGTGCTGGATGGCAGCGAAAGCAATCCCAACTTTACCA
AGGGATTTCGGTTCAGCGATCCGTGCCTACTGAACCCCTCCGATAATGAC
TCTAAGCTGAGTGGCCAGAATACACCAGAGTGTCGAAATGTGAACAACAA
TGGCAGTGGCTGTGATCTGGCACATCAAAACAAATTTTTCGCGGCTCTAA
TGGAACAAATAAACATATTGCACGACACCAATTCCAAGATCTGCCGGAAT
TTGCATAATACAAAAGTTGATATCGAAGCTTTAAAGCACTCCCCTAATAG
CCAGCACTGGGCAGGTGTAGGCTTTGGGGGCATGCGGCACCGTAGAGATA
GCTTAAGCGGGCTAAGCACACAAAGTCAACCTCTTATTCTTGGCAGTGGA
TTGGGAGGGACACACAGCCCAGCGCCCACATTTCACTCAGGCGCCTACAC
TCCAGGAATGATGACGGATGTCGTGCGGGAAGTGAAGGAGGCAGCGCGCA
TACGCGAAGATGCACTGCTAAGTCGAGTAAAATTAATGGTTGAAGAACGT
CAGTGTTCCTTAAACGAGGGAAATGTCCGAATTCTGAGAGATATAGACGA
TCTAAAGACCCAAGTAATGCAGTTGCGACTGGAGAAAAAGGAGACTAACA
AACGCCTCTCACATCTGGAATCCGAAAACAAGTGCCTTCGTCAAGCTCTG
GCCGGTTGTTATAACCAGCGGCCAATCAGTAACGACATTATTTACGAAAA
TGACCGATCCCATGGATTCCGAAAGCCATTTCCGAATGGGGGTGGCGGCG
GAGTTGTGGGTTCCGGTGCCCTCGGAATACGACGGGCAAAATCTTTAAAC
CTTCATTATGGAACAATGCATCAAACGCCTATCCAAACGACACACTCTTT
GGAAGAGGACGACGAAATAGAAGAGGAGCAGTTAGTAGAGCAAGTAGGAC
TGGACGGAGAAGAATTATCCCTGACTGGCAACAACAGTTTATCGTGTTTG
AACATCGGTCATCAATCTCCCTCCAACTTAACGCCTCACTCACAGATACC
TAAATCAGAAAAGCAAGCAGTTAGAAGCCCTCCCTCTTTTGCGCTGGCTT
CTGACCAGATCAATCCGGGAATTCCACCGCCATTGCTACCACGAAAGAAG
GACCACGCTCATCTAAAGCGGGAGCGCAGCGAGGCGGCCTCCGTACCCTT
GAGAAATTGGTTGAAGACCGCAAGCTTTCTAGACCAT
BO10177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:34:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RA | 1506 | CG9795-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| CG9795-RF | 2082 | CG9795-PF | 565..2044 | 17..1496 | 7400 | 100 | Plus |
| CG9795-RE | 2211 | CG9795-PE | 565..2044 | 17..1496 | 7400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:34:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-RA | 2693 | CG9795-RA | 817..2319 | 17..1519 | 7515 | 100 | Plus |
| CG9795-RF | 2390 | CG9795-RF | 669..2148 | 17..1496 | 7400 | 100 | Plus |
| CG9795-RE | 2573 | CG9795-RE | 669..2148 | 17..1496 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4324871..4325461 | 906..1496 | 2955 | 100 | Plus |
| 3R | 32079331 | 3R | 4323952..4324164 | 354..566 | 1065 | 100 | Plus |
| 3R | 32079331 | 3R | 4323687..4323889 | 152..354 | 1015 | 100 | Plus |
| 3R | 32079331 | 3R | 4324335..4324511 | 565..741 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 4323488..4323622 | 17..151 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 4324584..4324672 | 737..825 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 4324729..4324811 | 825..907 | 415 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6794..6849 | 29..84 | 172 | 78.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..6922 | 29..82 | 171 | 79.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1124..1184 | 29..90 | 155 | 76.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2362 | 29..84 | 154 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2399 | 29..85 | 150 | 73.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6848 | 29..104 | 146 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2420 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6787 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6808 | 29..85 | 141 | 71.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1135 | 29..85 | 141 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6806..6858 | 29..81 | 139 | 73.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3291..3364 | 29..102 | 136 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6842..6911 | 29..95 | 135 | 70 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 639..715 | 106..30 | 133 | 63.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2820..2870 | 29..82 | 128 | 74.1 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..726 | 82..28 | 122 | 69.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2322..2374 | 29..81 | 121 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2790..2832 | 29..71 | 116 | 74.4 | Plus |
BO10177.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:11 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RC | 657..2168 | 10..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:19:06 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RA | 825..2319 | 25..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:34 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RC | 670..2164 | 25..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:51:09 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9795-RA | 825..2319 | 25..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:51:09 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4324730..4324811 | 826..907 | 100 | -> | Plus |
| 3R | 4324337..4324510 | 567..740 | 100 | -> | Plus |
| 3R | 4323496..4323622 | 25..151 | 100 | -> | Plus |
| 3R | 4323687..4323889 | 152..354 | 100 | -> | Plus |
| 3R | 4323953..4324164 | 355..566 | 100 | -> | Plus |
| 3R | 4324588..4324672 | 741..825 | 100 | -> | Plus |
| 3R | 4324873..4325461 | 908..1496 | 100 | -> | Plus |
| 3R | 4325697..4325719 | 1497..1521 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:19:06 Download gff for
BO10177.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 149218..149344 | 25..151 | 100 | -> | Plus |
| arm_3R | 149409..149611 | 152..354 | 100 | -> | Plus |
| arm_3R | 149675..149886 | 355..566 | 100 | -> | Plus |
| arm_3R | 150059..150232 | 567..740 | 100 | -> | Plus |
| arm_3R | 150310..150394 | 741..825 | 100 | -> | Plus |
| arm_3R | 150452..150533 | 826..907 | 100 | -> | Plus |
| arm_3R | 150595..151183 | 908..1496 | 100 | -> | Plus |
| arm_3R | 151419..151441 | 1497..1521 | 92 | | Plus |
BO10177.pep Sequence
Translation from 16 to 1537
> BO10177.pep
MFLTQQQQLPQLKQQLQQQRQQEFSKRTQPYGVGPGTPFSLGIQRNSNSL
SHRYPMLFPPQSLNSYGDGGQEFASLPPLNNMMGGPEGLGCDQEPNSTDV
LDGSESNPNFTKGFRFSDPCLLNPSDNDSKLSGQNTPECRNVNNNGSGCD
LAHQNKFFAALMEQINILHDTNSKICRNLHNTKVDIEALKHSPNSQHWAG
VGFGGMRHRRDSLSGLSTQSQPLILGSGLGGTHSPAPTFHSGAYTPGMMT
DVVREVKEAARIREDALLSRVKLMVEERQCSLNEGNVRILRDIDDLKTQV
MQLRLEKKETNKRLSHLESENKCLRQALAGCYNQRPISNDIIYENDRSHG
FRKPFPNGGGGGVVGSGALGIRRAKSLNLHYGTMHQTPIQTTHSLEEDDE
IEEEQLVEQVGLDGEELSLTGNNSLSCLNIGHQSPSNLTPHSQIPKSEKQ
AVRSPPSFALASDQINPGIPPPLLPRKKDHAHLKRERSEAASVPLRNWLK
TASFLDH
BO10177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9795-PA | 501 | CG9795-PA | 1..501 | 1..501 | 2650 | 100 | Plus |
| CG9795-PF | 693 | CG9795-PF | 189..681 | 1..493 | 2603 | 100 | Plus |
| CG9795-PE | 736 | CG9795-PE | 189..681 | 1..493 | 2603 | 100 | Plus |
| CG9795-PD | 699 | CG9795-PD | 152..644 | 1..493 | 2603 | 100 | Plus |
