Clone Sequence Records
BO10178.3prime Sequence
911 bp (866 high quality bases) assembled on 2006-04-19
> BO10178.3prime
ATGGTCTAGAAAGCTTGCCAGCTCGTCCTTATCCAGATCGATGTCGCTCA
GATCGATGTCCTCCTCGGTGGGCAGTTGGCCATCTTTGCCGTCCCAAGGA
TCCACGGACACAATCGCCGGCTTTTTGGCTCCGCGAACAGGCGCCGTGTG
GCCACGTCCGTAGGAGATGTCGCGCAGGAACTCGTTGATGCCGTCCTTGG
AGAAGGAGCCCTTGAGCACGGAGAATTTCATCTTCTTGAAGTTGACCACA
GCCATGGCCGGATAGCCGAATCCGCCCACTTCGAGCGACTCTTCCAGGGC
CAACTGCTGGCCACCTTCTGCCCAGGCCCAGCCCCATTGCTTCTGCTTGA
ACTTCTCGCCCAGGGTGCGCAATGTGTCGAGGAACTTGTTGCGGCACTTG
GCATCGCAGTCGAGAATGTGTGGCAGAACGGACACGACGCACAATGGCTT
TCCTTCGCAGGCAGTTTCAAAAGTCGATTCATTGATAATCTCGATGAGTT
CGGGTGCTGGCACATTGGCCACATGCTTGTCACTGGCCCAGGATACAATA
TCCGAGGCAGTGCGTCCGCCATCATACTCCTGGGCATCACTGGCTCGCTT
GGAGCCCGCAGGGAAGAACTTAATGGTAGGATACCCACGCACATTGTATT
CGGCGGCCTTGCTCTGATGCGCGGTGGCATCCAGGGCGCCCAACTTAACC
TTGCCCTTCAATTCTTTGGCGGCCTTGGCCCATTCGGGTGCCAGGTTCTT
GCAGTGACCACACCAGGGGGCGAAGAATTCCACCAGCCATATGTCGTCGG
AGTTCAGGACCAGTTTGTCAAAGTTGTCCTCGGTGAGTTCGATGACATCA
TCGCCGGACGAGCTGCCGGAACCGCCGGAAGACGATCCACCGCCGCCGCC
CAGGAACACCT
BO10178.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5809-PA | 1302 | CaBP1-RA | 413..1299 | 905..19 | 4435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 596..1482 | 905..19 | 4435 | 100 | Minus |
| CaBP1-RA | 1723 | CG5809-RA | 596..1482 | 905..19 | 4435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355185..16356071 | 19..905 | 4435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:35:37 has no hits.
BO10178.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:12 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-PA | 407..1302 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:25 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-PA | 407..1302 | 15..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:44:11 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 590..1486 | 14..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:16:27 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 590..1486 | 14..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:16:27 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355181..16356075 | 14..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:44:11 Download gff for
BO10178.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355181..16356075 | 14..911 | 99 | | Plus |
BO10178.5prime Sequence
820 bp (819 high quality bases) assembled on 2006-04-19
> BO10178.5prime
GAAGTTATCAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCAT
TTGTCGTGGGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTG
GAGCTGACGCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCAT
CTGGGTCGTGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGG
TGCCCGAGTACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTG
GGCTCCGTGAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGT
ACGTGGCTTTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCA
CGGACTACAATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTG
GCGGAGGTCAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATC
GTCTTCCGGCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCA
CCGAGGACAACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTG
GTGGAATTCTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGA
ATGGGCCAAGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCC
TGGATGCCACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGG
TATCCTACCATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGC
CCAGGAGTATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGNGCCA
GTGACNAGCATGTGGCCAAT
BO10178.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5809-PA | 1302 | CaBP1-RA | 1..804 | 17..820 | 3982 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..987 | 17..820 | 3998 | 99.8 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..987 | 17..820 | 3998 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355680..16356471 | 820..29 | 3938 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:31:23 has no hits.
BO10178.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:13 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:26 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-PA | 1..804 | 17..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:40:28 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..987 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:23:54 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..987 | 10..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:23:54 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355680..16356470 | 30..820 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:40:28 Download gff for
BO10178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355680..16356470 | 30..820 | 99 | <- | Minus |
BO10178.complete Sequence
1333 bp (1333 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631671
> BO10178.complete
GAAGTTATCAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCAT
TTGTCGTGGGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTG
GAGCTGACGCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCAT
CTGGGTCGTGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGG
TGCCCGAGTACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTG
GGCTCCGTGAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGT
ACGTGGCTTTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCA
CGGACTACAATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTG
GCGGAGGTCAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATC
GTCTTCCGGCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCA
CCGAGGACAACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTG
GTGGAATTCTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGA
ATGGGCCAAGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCC
TGGATGCCACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGG
TATCCTACCATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGC
CCAGGAGTATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGGGCCA
GTGACAAGCATGTGGCCAATGTGCCAGCACCCGAACTCATCGAGATTATC
AATGAATCGACTTTTGAAACTGCCTGCGAAGGAAAGCCATTGTGCGTCGT
GTCCGTTCTGCCACACATTCTCGACTGCGATGCCAAGTGCCGCAACAAGT
TCCTCGACACATTGCGCACCCTGGGCGAGAAGTTCAAGCAGAAGCAATGG
GGCTGGGCCTGGGCAGAAGGTGGCCAGCAGTTGGCCCTGGAAGAGTCGCT
CGAAGTGGGCGGATTCGGCTATCCGGCCATGGCTGTGGTCAACTTCAAGA
AGATGAAATTCTCCGTGCTCAAGGGCTCCTTCTCCAAGGACGGCATCAAC
GAGTTCCTGCGCGACATCTCCTACGGACGTGGCCACACGGCGCCTGTTCG
CGGAGCCAAAAAGCCGGCGATTGTGTCCGTGGATCCTTGGGACGGCAAAG
ATGGCCAACTGCCCACCGAGGAGGACATCGATCTGAGCGACATCGATCTG
GATAAGGACGAGCTGGCAAGCTTTCTAGACCAT
BO10178.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1302 | CG5809-PB | 1..1299 | 17..1315 | 6495 | 100 | Plus |
| CaBP1-RA | 1302 | CG5809-PA | 1..1299 | 17..1315 | 6495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1482 | 17..1315 | 6495 | 100 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1482 | 17..1315 | 6495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355185..16356471 | 1315..29 | 6435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:47:47 has no hits.
BO10178.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:28 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 1..1302 | 17..1319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:14 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 204..1512 | 10..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:04 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 184..1482 | 17..1317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:28 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 204..1512 | 10..1320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:48 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 184..1482 | 17..1317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:48 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355183..16356470 | 30..1317 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:04 Download gff for
BO10178.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355183..16356470 | 30..1317 | 99 | <- | Minus |
BO10178.pep Sequence
Translation from 16 to 1333
> BO10178.pep
MRQLASILLLAFVVGSVSAFYSPSDGVVELTPSNFDREVLKDDAIWVVEF
YAPWCGHCQSLVPEYKKLAKALKGVVKVGSVNADADSTLSGQFGVRGFPT
IKIFGANKKSPTDYNGQRTAKAIAEAALAEVKKKVQGVLGGGGGSSSGGS
GSSSGDDVIELTEDNFDKLVLNSDDIWLVEFFAPWCGHCKNLAPEWAKAA
KELKGKVKLGALDATAHQSKAAEYNVRGYPTIKFFPAGSKRASDAQEYDG
GRTASDIVSWASDKHVANVPAPELIEIINESTFETACEGKPLCVVSVLPH
ILDCDAKCRNKFLDTLRTLGEKFKQKQWGWAWAEGGQQLALEESLEVGGF
GYPAMAVVNFKKMKFSVLKGSFSKDGINEFLRDISYGRGHTAPVRGAKKP
AIVSVDPWDGKDGQLPTEEDIDLSDIDLDKDELASFLDH
BO10178.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-PB | 433 | CG5809-PB | 1..433 | 1..433 | 2272 | 100 | Plus |
| CaBP1-PA | 433 | CG5809-PA | 1..433 | 1..433 | 2272 | 100 | Plus |
| prtp-PC | 416 | CG1837-PC | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PB | 416 | CG1837-PB | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PA | 416 | CG1837-PA | 40..266 | 28..260 | 304 | 31.7 | Plus |
| prtp-PC | 416 | CG1837-PC | 168..406 | 27..260 | 274 | 29.8 | Plus |
| prtp-PB | 416 | CG1837-PB | 168..406 | 27..260 | 274 | 29.8 | Plus |
