Clone BO10179 Report

Search the DGRC for BO10179

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:79
Vector:pDNR-Dual
Associated Gene/Transcriptfax-RA
Protein status:BO10179.pep: validated full length
Sequenced Size:1288

Clone Sequence Records

BO10179.3prime Sequence

831 bp (772 high quality bases) assembled on 2006-04-19

> BO10179.3prime
ATGGTCTAGAAAGCTTGCCTTTGTTTCCTCCTTCTCTTTGTTCTCCTCGG
TCGACTCCTTCTCGTTTGACTTGTCCTTCTCCAACTCCTTCTCGATCTTG
TCGCCCTCAGTGCCCTCCTGTTCGTTTGATTTCTCCTGCTCGCCACCCTC
CTTGCCCTCCTTGGTCTCGGGCTCTGGCTTGGGAATGTGCGCATTGAGGT
CCAGCTTCGTGCAGATCTCGTCCCAGTCGGGGAAGCACTTGTCCTTCATG
CGAGATACGTGGCCAATCAAGTTGGGGCACTTCTCGGTCATGTAGTCGCG
CAGCGGATACGCAATGTCCTTGGACAGATAGTGGAGCTGCGAGAGGACAG
CGAAGGCCACCACATCCAGGGTGGTGGGCTCGTCGCCGAAGAAGAAAGGC
TTGCAGTCGAGCATCTCGCTGAGCACCTTCAGGTCGTCCTTGCCGAACTC
CTCGATCTCCTCGGCGCTGTGGACACCGATGCCGTGCGCCTTCAGCTTCT
TCGTGCCCTGGAACCACTTGCGACCAAAGGTGATCTTAAAGAAGAAGTTC
AGAATCGAGTTGGGCAGCCGCAGGCCGAGGGCGTGCTGCAAGTTGACCTT
GTAGCCCTTGAGCACATTGTCCGGATACTTGGCGCGCCAGTAGAAGATGA
TCCAGATGAGATGGTTCTCCAGCATGGCAATCGTGGCGTACGAGACATTC
CTTTGCTCGGCGGTGAGTCCCGAGTCCAGGTACTTCTCGTATTTGGACGA
CAGTTCCTTGATGATGATGGCCGAATCGGCGATTTCCTCCCCATTCAGCT
CGATGAACGGCAGCTGACCCTTCTTGGAACG

BO10179.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4609-PA 1257 fax-RA 445..1254 828..19 4050 100 Minus
CG4609-PB 849 fax-RB 37..846 828..19 4050 100 Minus
CG4609-PD 840 fax-RD 347..837 509..19 2455 100 Minus
CG4609-PC 1248 fax-RC 755..1245 509..19 2455 100 Minus
CG4609-PD 840 fax-RD 37..348 828..517 1560 100 Minus
CG4609-PC 1248 fax-RC 445..756 828..517 1560 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RF 3218 CG4609-RF 85..894 828..19 4050 100 Minus
fax-RB 3283 CG4609-RB 150..959 828..19 4050 100 Minus
fax-RA 3988 CG4609-RA 855..1664 828..19 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16405501..16405849 172..520 1745 100 Plus
3L 28110227 3L 16407021..16407332 517..828 1560 100 Plus
3L 28110227 3L 16405326..16405428 70..172 515 100 Plus
3L 28110227 3L 16405120..16405172 19..71 265 100 Plus
Blast to na_te.dros performed 2015-02-12 19:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 693..631 114 66.7 Minus

BO10179.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:14 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PB 34..849 15..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:28 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PB 34..849 15..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:15 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 863..1681 11..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:17 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 852..1670 11..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:17 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16405114..16405170 11..69 93 <- Plus
3L 16405326..16405428 70..172 100 <- Plus
3L 16405502..16405845 173..516 100 <- Plus
3L 16407021..16407335 517..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:15 Download gff for BO10179.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398214..16398270 11..69 93 <- Plus
arm_3L 16398426..16398528 70..172 100 <- Plus
arm_3L 16398602..16398945 173..516 100 <- Plus
arm_3L 16400121..16400435 517..831 99   Plus

BO10179.5prime Sequence

818 bp (787 high quality bases) assembled on 2006-04-19

> BO10179.5prime
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCC

BO10179.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4609-PA 1257 fax-RA 1..802 17..818 4010 100 Plus
CG4609-PC 1248 fax-RC 1..756 17..772 3780 100 Plus
CG4609-PB 849 fax-RB 10..394 434..818 1925 100 Plus
CG4609-PD 840 fax-RD 10..348 434..772 1695 100 Plus
CG4609-PC 1248 fax-RC 755..793 780..818 195 100 Plus
CG4609-PD 840 fax-RD 347..385 780..818 195 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3988 CG4609-RA 406..1212 12..818 4020 99.9 Plus
fax-RC 3153 CG4609-RC 362..1159 12..818 3875 98.8 Plus
fax-RF 3218 CG4609-RF 58..442 434..818 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16411002..16411423 433..12 2095 99.8 Minus
3L 28110227 3L 16407021..16407361 772..432 1705 100 Minus
3L 28110227 3L 16405800..16405849 818..769 250 100 Minus
Blast to na_te.dros performed 2015-02-11 18:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 596..658 114 66.7 Plus

BO10179.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:16 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:29 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4609-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:30:47 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1223 12..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:35 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
fax-RA 406..1212 12..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:35 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16411002..16411423 12..433 99   Minus
3L 16405800..16405845 773..818 100 <- Minus
3L 16407021..16407359 434..772 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:30:47 Download gff for BO10179.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398900..16398945 773..818 100 <- Minus
arm_3L 16400121..16400459 434..772 100 <- Minus
arm_3L 16404102..16404523 12..433 99   Minus

BO10179.complete Sequence

1288 bp (1288 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631672

> BO10179.complete
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCTT
CGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCTCTCGC
AGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACTACATG
ACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAGGACAA
GTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAATGCGC
ACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTGGCGAG
CAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATCGAGAA
GGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGAGAACA
AAGAGAAGGAGGAAACAAAGGCAAGCTTTCTAGACCAT

BO10179.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:56
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 1257 CG4609-PA 1..1254 17..1270 6270 100 Plus
fax-RC 1248 CG4609-PC 1..1245 17..1270 6100 99.3 Plus
fax-RB 849 CG4609-PB 10..846 434..1270 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
fax-RA 3988 CG4609-RA 406..1664 12..1270 6280 99.9 Plus
fax-RC 3153 CG4609-RC 362..1611 12..1270 6110 99.2 Plus
fax-RF 3218 CG4609-RF 58..894 434..1270 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16411002..16411423 433..12 2095 99.8 Minus
3L 28110227 3L 16405501..16405849 1117..769 1745 100 Minus
3L 28110227 3L 16407021..16407361 772..432 1705 100 Minus
3L 28110227 3L 16405326..16405428 1219..1117 515 100 Minus
3L 28110227 3L 16405120..16405172 1270..1218 265 100 Minus
Blast to na_te.dros performed 2014-11-27 13:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy3 6973 gypsy3 GYPSY3 6973bp 4503..4564 596..658 114 66.7 Plus

BO10179.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:29 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 1..1257 17..1274 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:16 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1681 12..1278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:02 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 422..1675 17..1272 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:30 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 417..1681 12..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:13 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
fax-RA 411..1664 17..1272 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:13 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16405118..16405170 1220..1272 96 <- Minus
3L 16405326..16405428 1117..1219 100 <- Minus
3L 16405502..16405845 773..1116 100 <- Minus
3L 16407021..16407359 434..772 100 <- Minus
3L 16411002..16411418 17..433 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:02 Download gff for BO10179.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16398426..16398528 1117..1219 100 <- Minus
arm_3L 16398218..16398270 1220..1272 96 <- Minus
arm_3L 16398602..16398945 773..1116 100 <- Minus
arm_3L 16400121..16400459 434..772 100 <- Minus
arm_3L 16404102..16404518 17..433 100   Minus

BO10179.pep Sequence

Translation from 16 to 1288

> BO10179.pep
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETKASFLDH

BO10179.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
fax-PA 418 CG4609-PA 1..418 1..418 2187 100 Plus
fax-PC 415 CG4609-PC 1..415 1..418 2151 99.3 Plus
fax-PB 282 CG4609-PB 4..282 140..418 1478 100 Plus
fax-PF 274 CG4609-PF 1..274 145..418 1449 100 Plus
fax-PD 279 CG4609-PD 4..279 140..418 1442 98.9 Plus