Clone Sequence Records
BO10179.3prime Sequence
831 bp (772 high quality bases) assembled on 2006-04-19
> BO10179.3prime
ATGGTCTAGAAAGCTTGCCTTTGTTTCCTCCTTCTCTTTGTTCTCCTCGG
TCGACTCCTTCTCGTTTGACTTGTCCTTCTCCAACTCCTTCTCGATCTTG
TCGCCCTCAGTGCCCTCCTGTTCGTTTGATTTCTCCTGCTCGCCACCCTC
CTTGCCCTCCTTGGTCTCGGGCTCTGGCTTGGGAATGTGCGCATTGAGGT
CCAGCTTCGTGCAGATCTCGTCCCAGTCGGGGAAGCACTTGTCCTTCATG
CGAGATACGTGGCCAATCAAGTTGGGGCACTTCTCGGTCATGTAGTCGCG
CAGCGGATACGCAATGTCCTTGGACAGATAGTGGAGCTGCGAGAGGACAG
CGAAGGCCACCACATCCAGGGTGGTGGGCTCGTCGCCGAAGAAGAAAGGC
TTGCAGTCGAGCATCTCGCTGAGCACCTTCAGGTCGTCCTTGCCGAACTC
CTCGATCTCCTCGGCGCTGTGGACACCGATGCCGTGCGCCTTCAGCTTCT
TCGTGCCCTGGAACCACTTGCGACCAAAGGTGATCTTAAAGAAGAAGTTC
AGAATCGAGTTGGGCAGCCGCAGGCCGAGGGCGTGCTGCAAGTTGACCTT
GTAGCCCTTGAGCACATTGTCCGGATACTTGGCGCGCCAGTAGAAGATGA
TCCAGATGAGATGGTTCTCCAGCATGGCAATCGTGGCGTACGAGACATTC
CTTTGCTCGGCGGTGAGTCCCGAGTCCAGGTACTTCTCGTATTTGGACGA
CAGTTCCTTGATGATGATGGCCGAATCGGCGATTTCCTCCCCATTCAGCT
CGATGAACGGCAGCTGACCCTTCTTGGAACG
BO10179.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4609-PA | 1257 | fax-RA | 445..1254 | 828..19 | 4050 | 100 | Minus |
CG4609-PB | 849 | fax-RB | 37..846 | 828..19 | 4050 | 100 | Minus |
CG4609-PD | 840 | fax-RD | 347..837 | 509..19 | 2455 | 100 | Minus |
CG4609-PC | 1248 | fax-RC | 755..1245 | 509..19 | 2455 | 100 | Minus |
CG4609-PD | 840 | fax-RD | 37..348 | 828..517 | 1560 | 100 | Minus |
CG4609-PC | 1248 | fax-RC | 445..756 | 828..517 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RF | 3218 | CG4609-RF | 85..894 | 828..19 | 4050 | 100 | Minus |
fax-RB | 3283 | CG4609-RB | 150..959 | 828..19 | 4050 | 100 | Minus |
fax-RA | 3988 | CG4609-RA | 855..1664 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:35:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16405501..16405849 | 172..520 | 1745 | 100 | Plus |
3L | 28110227 | 3L | 16407021..16407332 | 517..828 | 1560 | 100 | Plus |
3L | 28110227 | 3L | 16405326..16405428 | 70..172 | 515 | 100 | Plus |
3L | 28110227 | 3L | 16405120..16405172 | 19..71 | 265 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 19:35:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 693..631 | 114 | 66.7 | Minus |
BO10179.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:14 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PB | 34..849 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:28 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PB | 34..849 | 15..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:19:15 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 863..1681 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:52:17 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 852..1670 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:52:17 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16405114..16405170 | 11..69 | 93 | <- | Plus |
3L | 16405326..16405428 | 70..172 | 100 | <- | Plus |
3L | 16405502..16405845 | 173..516 | 100 | <- | Plus |
3L | 16407021..16407335 | 517..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:19:15 Download gff for
BO10179.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398214..16398270 | 11..69 | 93 | <- | Plus |
arm_3L | 16398426..16398528 | 70..172 | 100 | <- | Plus |
arm_3L | 16398602..16398945 | 173..516 | 100 | <- | Plus |
arm_3L | 16400121..16400435 | 517..831 | 99 | | Plus |
BO10179.5prime Sequence
818 bp (787 high quality bases) assembled on 2006-04-19
> BO10179.5prime
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCC
BO10179.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4609-PA | 1257 | fax-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
CG4609-PC | 1248 | fax-RC | 1..756 | 17..772 | 3780 | 100 | Plus |
CG4609-PB | 849 | fax-RB | 10..394 | 434..818 | 1925 | 100 | Plus |
CG4609-PD | 840 | fax-RD | 10..348 | 434..772 | 1695 | 100 | Plus |
CG4609-PC | 1248 | fax-RC | 755..793 | 780..818 | 195 | 100 | Plus |
CG4609-PD | 840 | fax-RD | 347..385 | 780..818 | 195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:09:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 3988 | CG4609-RA | 406..1212 | 12..818 | 4020 | 99.9 | Plus |
fax-RC | 3153 | CG4609-RC | 362..1159 | 12..818 | 3875 | 98.8 | Plus |
fax-RF | 3218 | CG4609-RF | 58..442 | 434..818 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:09:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16411002..16411423 | 433..12 | 2095 | 99.8 | Minus |
3L | 28110227 | 3L | 16407021..16407361 | 772..432 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 16405800..16405849 | 818..769 | 250 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 18:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 596..658 | 114 | 66.7 | Plus |
BO10179.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:16 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:29 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4609-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:30:47 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1223 | 12..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:44:35 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 406..1212 | 12..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:44:35 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16411002..16411423 | 12..433 | 99 | | Minus |
3L | 16405800..16405845 | 773..818 | 100 | <- | Minus |
3L | 16407021..16407359 | 434..772 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:30:47 Download gff for
BO10179.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398900..16398945 | 773..818 | 100 | <- | Minus |
arm_3L | 16400121..16400459 | 434..772 | 100 | <- | Minus |
arm_3L | 16404102..16404523 | 12..433 | 99 | | Minus |
BO10179.complete Sequence
1288 bp (1288 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631672
> BO10179.complete
GAAGTTATCAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGG
AAACGCCCGCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCA
GCGGCCCCGCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGT
GGAGAAGGCTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAA
AGCAGGACAAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTG
GCAGCACCCGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAA
TGTGCACAAGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCT
CGCGCACCCCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAG
ACCTGGCTGCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGAT
GCGTTTCCGCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGG
AGGAAATCGCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATAC
GAGAAGTACCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTA
CGCCACGATTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACT
GGCGCGCCAAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTG
CAGCACGCCCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTT
TAAGATCACCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGG
CGCACGGCATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAG
GACGACCTGAAGGTGCTCAGCGAGATGCTCGACTGCAAGCCTTTCTTCTT
CGGCGACGAGCCCACCACCCTGGATGTGGTGGCCTTCGCTGTCCTCTCGC
AGCTCCACTATCTGTCCAAGGACATTGCGTATCCGCTGCGCGACTACATG
ACCGAGAAGTGCCCCAACTTGATTGGCCACGTATCTCGCATGAAGGACAA
GTGCTTCCCCGACTGGGACGAGATCTGCACGAAGCTGGACCTCAATGCGC
ACATTCCCAAGCCAGAGCCCGAGACCAAGGAGGGCAAGGAGGGTGGCGAG
CAGGAGAAATCAAACGAACAGGAGGGCACTGAGGGCGACAAGATCGAGAA
GGAGTTGGAGAAGGACAAGTCAAACGAGAAGGAGTCGACCGAGGAGAACA
AAGAGAAGGAGGAAACAAAGGCAAGCTTTCTAGACCAT
BO10179.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 1257 | CG4609-PA | 1..1254 | 17..1270 | 6270 | 100 | Plus |
fax-RC | 1248 | CG4609-PC | 1..1245 | 17..1270 | 6100 | 99.3 | Plus |
fax-RB | 849 | CG4609-PB | 10..846 | 434..1270 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-RA | 3988 | CG4609-RA | 406..1664 | 12..1270 | 6280 | 99.9 | Plus |
fax-RC | 3153 | CG4609-RC | 362..1611 | 12..1270 | 6110 | 99.2 | Plus |
fax-RF | 3218 | CG4609-RF | 58..894 | 434..1270 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16411002..16411423 | 433..12 | 2095 | 99.8 | Minus |
3L | 28110227 | 3L | 16405501..16405849 | 1117..769 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 16407021..16407361 | 772..432 | 1705 | 100 | Minus |
3L | 28110227 | 3L | 16405326..16405428 | 1219..1117 | 515 | 100 | Minus |
3L | 28110227 | 3L | 16405120..16405172 | 1270..1218 | 265 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 13:53:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 596..658 | 114 | 66.7 | Plus |
BO10179.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:29 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 1..1257 | 17..1274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:16 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1681 | 12..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:35:02 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 422..1675 | 17..1272 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:30 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 417..1681 | 12..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:13 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fax-RA | 411..1664 | 17..1272 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:13 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16405118..16405170 | 1220..1272 | 96 | <- | Minus |
3L | 16405326..16405428 | 1117..1219 | 100 | <- | Minus |
3L | 16405502..16405845 | 773..1116 | 100 | <- | Minus |
3L | 16407021..16407359 | 434..772 | 100 | <- | Minus |
3L | 16411002..16411418 | 17..433 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:35:02 Download gff for
BO10179.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16398426..16398528 | 1117..1219 | 100 | <- | Minus |
arm_3L | 16398218..16398270 | 1220..1272 | 96 | <- | Minus |
arm_3L | 16398602..16398945 | 773..1116 | 100 | <- | Minus |
arm_3L | 16400121..16400459 | 434..772 | 100 | <- | Minus |
arm_3L | 16404102..16404518 | 17..433 | 100 | | Minus |
BO10179.pep Sequence
Translation from 16 to 1288
> BO10179.pep
MASEVAQIPAEETPAVAAAEKSEEPEKSAAPPADSAAAPAAAPAVEKAED
ADGEKKDGEAGKQDKQQDGEEPKKDEAVAAPVATKSEAPPAQKFNVHKTN
FEKDIIYLYQFSRTPLLPSLSPYCLKVETWLRLVGLKYENVDHKMRFRSK
KGQLPFIELNGEEIADSAIIIKELSSKYEKYLDSGLTAEQRNVSYATIAM
LENHLIWIIFYWRAKYPDNVLKGYKVNLQHALGLRLPNSILNFFFKITFG
RKWFQGTKKLKAHGIGVHSAEEIEEFGKDDLKVLSEMLDCKPFFFGDEPT
TLDVVAFAVLSQLHYLSKDIAYPLRDYMTEKCPNLIGHVSRMKDKCFPDW
DEICTKLDLNAHIPKPEPETKEGKEGGEQEKSNEQEGTEGDKIEKELEKD
KSNEKESTEENKEKEETKASFLDH
BO10179.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fax-PA | 418 | CG4609-PA | 1..418 | 1..418 | 2187 | 100 | Plus |
fax-PC | 415 | CG4609-PC | 1..415 | 1..418 | 2151 | 99.3 | Plus |
fax-PB | 282 | CG4609-PB | 4..282 | 140..418 | 1478 | 100 | Plus |
fax-PF | 274 | CG4609-PF | 1..274 | 145..418 | 1449 | 100 | Plus |
fax-PD | 279 | CG4609-PD | 4..279 | 140..418 | 1442 | 98.9 | Plus |