Clone Sequence Records
BO10184.3prime Sequence
996 bp (814 high quality bases) assembled on 2006-04-19
> BO10184.3prime
ATGGTCTAGAAAGCTTGCTAGGGAGCTCTGCTTGGGGGCCTCCAGGTTCA
GCTTGTGTTGCTTCTCGATGAGGGAGAGCAGGGTCCTGGGCACGTCCATG
GTCTGGTCATCGACGAGCACTATGTCAAAGGTGTCCATGTACTTCTTCAT
GTTGGCTTCTACGTGGTCGAAGAGGAAGCCGATTTTCATGATGTGTGAGG
AGGCAGGCACCCCGGAGGCCATGTCTGCATCACCAATTGAGTCGCCCATG
ACTATGATGTGGTCCCTGGTGTGCACCAAGTCGTAATACTCGCTGGTCTC
ATTTAGCACCGTTTCGTTCTTGTTGAAGGTGTGTATCATCGGCTGCTGAA
AGCCATCTAGAAGGCCATCCCGGAACTGAAGAAAGTTCGAGACTACCTTC
ACGTTCGGATGCAAAACGTTGGCCTGGCGAAGAACCGAGACCACCGAGTT
GCCCAGCCCGGCGGAGAAGACAAGCGTGGGAATGCCCAAGCGCTGGAGGT
CCGCAAAGAACTCGTGGGTGCGGTCACGTAGCGCATGCGTGTACTTGCTG
GCTATCTGATCTATTTCCGACTGGTCGAAGGGGAAGCCGCTGGTCAGTTC
GCCAGACTTGGTCCACCACTCGATCATGTACTGCACCTTCTCGGCGATGG
GCATGTGGGGATCGATCTCAATGGGCCGGTACTTGTGGTACAGCTTGTCC
GTCTCCGCCTTAAAGTTTTCCGGCAGCGACTGGCAGGCGTTGAAGATCCC
GAAACTGGAGGGCACTGCTCCTCCATCCTCCGTGCGCTGCTTGGTGATGG
TGTAGTCGAAGTCGGAGACGATTTGCATGCGCTCTGGTCCGCCGATGACG
AACTCGGTGATGATGCGCTCCACCTCCCGCGGATCCCGCATGCGGCAGTG
GTCCTGGGTGAGGGCCGGAATGTCCTGCAGTCGCAGTCTGCCGCCCGGTG
GGCTCACGCTTCTCGTCAAAGCCCATGTCGACTGATAACTTCGTAT
BO10184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3362-PA | 960 | CG3362-RA | 31..957 | 945..19 | 4560 | 99.6 | Minus |
| CG3362-PA | 960 | CG3362-RA | 1..32 | 976..945 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 375..1331 | 976..19 | 4720 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195872..24196828 | 976..19 | 4695 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:24:06 has no hits.
BO10184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:20 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..960 | 15..976 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:35 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..960 | 15..976 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:05 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 370..1336 | 11..981 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:31 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 370..1336 | 11..981 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:31 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195867..24196833 | 11..981 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:05 Download gff for
BO10184.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083390..20084356 | 11..981 | 98 | | Minus |
BO10184.5prime Sequence
959 bp (830 high quality bases) assembled on 2006-04-19
> BO10184.5prime
GAAGTTATCAGTCGACATGGGCTTTGACGAGAAGCGTGAGCCCACCGGCG
GCAGACTGCGACTGCAGGACATTCCGGCCCTCACCCAGGACCACTGCCGC
ATGCGGGATCCGGCGGAGGTGGAGCGCATCATCAACGAGTTCGTCATCGG
CGGACCAGAGCGCATGCAAATCGTCTCCGACTTCGACTACACCATCACCA
AGCAGCGCACGGAGGATGGAGGAGCAGTGCCCTCCAGTTTCGGGATCTTC
AACGCCTGCCAGTCGCTGCCGGAAAACTTTAAGGCGGAGACGGACAAGCT
GTACCACAAGTACCGGCCCATTGAGATCGATCCCCACATGCCCATCGCCG
AGAAGGTGCAGTACATGATCGAGTGGTGGACCAAGTCTGGCGAACTGACC
AGCGGCTTCCCCTTCGACCAGTCGGAAATAGATCAGATAGCCAGCAAGTA
CACGCATGCGCTACGTGACCGCACCCACGAGTTCTTTGCGGACCTCCAGC
GCTTGGGCATTCCCACGCTTGTCTTCTCCGCCGGGCTGGGCAACTCGGTG
GTCTCGGTTCTTCGCCAGGCCAACGTTTTGCATCCGAACGTGAAGGTAGT
CTCGAACTTTCTTCAGTTCCGGGATGGCCTTCTAGATGGCTTTCAGCAGC
CGATGATACACACCTTCAACAAGAACGAAACGGTGCTAAATGAGACCAGC
GAGTATTACGACTTGGTGCACACCAGGGACCACATCATAGTCATGGGCGA
CTCAATTGGTGATGCAGACATGGCCTCCGGGGTGCCTGCCCTCTCACACA
TCATGAAAATCGGCTTCCTCTTCGACCACGTAGAAGCCAACATGAAGAAG
TACATGGACACCTTTGACATAGTGCTCGTCGATGACCAGACCATGGACGT
GCCCAGGACCCTGCTCTCCCTCATCGAGAAGCAACACAAGCTGAAACCTG
GAGGCCCCC
BO10184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3362-PA | 960 | CG3362-RA | 1..929 | 17..945 | 4595 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:29:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 375..1316 | 17..959 | 4660 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:29:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195872..24196813 | 17..959 | 4635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:29:31 has no hits.
BO10184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:21 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:37 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-PA | 1..942 | 17..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:40:26 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 370..1316 | 12..959 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:13:15 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 370..1316 | 12..959 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:13:15 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195867..24196813 | 12..959 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:40:26 Download gff for
BO10184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083390..20084336 | 12..959 | 99 | | Plus |
BO10184.complete Sequence
991 bp (991 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631674
> BO10184.complete
GAAGTTATCAGTCGACATGGGCTTTGACGAGAAGCGTGAGCCCACCGGCG
GCAGACTGCGACTGCAGGACATTCCGGCCCTCACCCAGGACCACTGCCGC
ATGCGGGATCCGGCGGAGGTGGAGCGCATCATCAACGAGTTCGTCATCGG
CGGACCAGAGCGCATGCAAATCGTCTCCGACTTCGACTACACCATCACCA
AGCAGCGCACGGAGGATGGAGGAGCAGTGCCCTCCAGTTTCGGGATCTTC
AACGCCTGCCAGTCGCTGCCGGAAAACTTTAAGGCGGAGACGGACAAGCT
GTACCACAAGTACCGGCCCATTGAGATCGATCCCCACATGCCCATCGCCG
AGAAGGTGCAGTACATGATCGAGTGGTGGACCAAGTCTGGCGAACTGACC
AGCGGCTTCCCCTTCGACCAGTCGGAAATAGATCAGATAGCCAGCAAGTA
CACGCATGCGCTACGTGACCGCACCCACGAGTTCTTTGCGGACCTCCAGC
GCTTGGGCATTCCCACGCTTGTCTTCTCCGCCGGGCTGGGCAACTCGGTG
GTCTCGGTTCTTCGCCAGGCCAACGTTTTGCATCCGAACGTGAAGGTAGT
CTCGAACTTTCTTCAGTTCCGGGATGGCCTTCTAGATGGCTTTCAGCAGC
CGATGATACACACCTTCAACAAGAACGAAACGGTGCTAAATGAGACCAGC
GAGTATTACGACTTGGTGCACACCAGGGACCACATCATAGTCATGGGCGA
CTCAATTGGTGATGCAGACATGGCCTCCGGGGTGCCTGCCTCCTCACACA
TCATGAAAATCGGCTTCCTCTTCGACCACGTAGAAGCCAACATGAAGAAG
TACATGGACACCTTTGACATAGTGCTCGTCGATGACCAGACCATGGACGT
GCCCAGGACCCTGCTCTCCCTCATCGAGAAGCAACACAAGCTGAACCTGG
AGGCCCCCAAGCAGAGCTCCCTAGCAAGCTTTCTAGACCAT
BO10184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 960 | CG3362-PA | 1..957 | 17..973 | 4785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:04:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-RA | 1530 | CG3362-RA | 375..1331 | 17..973 | 4785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24195872..24196828 | 17..973 | 4785 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:04:04 has no hits.
BO10184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:00 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 1..960 | 17..977 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:21:39 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 326..1292 | 12..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:13 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 375..1331 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:00 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3362-RA | 326..1292 | 12..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:12:06 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cN-IIIB-RA | 375..1331 | 17..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:12:06 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24195872..24196828 | 17..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:13 Download gff for
BO10184.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20083395..20084351 | 17..975 | 99 | | Plus |
BO10184.pep Sequence
Translation from 16 to 991
> BO10184.pep
MGFDEKREPTGGRLRLQDIPALTQDHCRMRDPAEVERIINEFVIGGPERM
QIVSDFDYTITKQRTEDGGAVPSSFGIFNACQSLPENFKAETDKLYHKYR
PIEIDPHMPIAEKVQYMIEWWTKSGELTSGFPFDQSEIDQIASKYTHALR
DRTHEFFADLQRLGIPTLVFSAGLGNSVVSVLRQANVLHPNVKVVSNFLQ
FRDGLLDGFQQPMIHTFNKNETVLNETSEYYDLVHTRDHIIVMGDSIGDA
DMASGVPASSHIMKIGFLFDHVEANMKKYMDTFDIVLVDDQTMDVPRTLL
SLIEKQHKLNLEAPKQSSLASFLDH
BO10184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cN-IIIB-PA | 319 | CG3362-PA | 1..319 | 1..319 | 1669 | 100 | Plus |
