Clone BO10187 Report

Search the DGRC for BO10187

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:101
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptEloA-RB
Protein status:BO10187.pep: validated not full length
Sequenced Size:1732

Clone Sequence Records

BO10187.3prime Sequence

821 bp (801 high quality bases) assembled on 2006-04-19

> BO10187.3prime
ATGGTCTAGAAAGCTTGCTCGTTTGAGACGTCCGCGCATAAACTGCAAGG
TCTTCGCCATTAGAGGTGCCTTCTTCGATCGCGCTGGTCCAGCCCCCACT
TGGGCCGTGTCCCTGGCAGCGGCCAGCACACGTAGTCGGGCATCGCCCAC
CTTGGCTGCATTTGGAGTCACGCTGGACAAGGCGGCCACTCGGGCGGCTG
GAGTGGCAATTAGCTTGCCCTTGGTGCCATATTGCTCTTGCTTGCGCTGC
ACACTACGCGGCGGCTTCACCATTGAGTCCACAAAGGCCAATTGCGTCTT
GCGCACAGGCGCCTCGCTTATCTTTTGCGATGCCTTGATGCTCTCGGCCA
GAATGCTAAGTTTGCGATCCTTTTCCTCTTGGCAGCGCAAAAACATTTCG
CGCCACGTTTCCATCTCTTCACGCCGCTGACTGCGACAGTGACGTTGGAC
ATGCTGTTGCCATAGGACATCACTGTCATCCATTAAATAAGGATTGTACT
CCTCAAAGTTAAGCAGCTGCTGGGGGGTAGCTCGCTCCAAAACGGGACGT
AGGACCTCAAACGGAACGCCACCCGTATACTCCAATGCATCAATATTCTT
TTGCAGCACGCGGGTGCAGAGATCAAAAAGGGAAGGGACCTGCAGGATTT
GACCAGTTCTCACACCCGAATAGATCTTGGTGCGCATAGTTTTGGAAGAG
ATGCCCTGCGCTAGAGCTTCTGACTCATTAAAGTATCGTGATGCTTGCGC
CTTGTGTGAGCCACCCTGGTTAAAGACGACGTCCATAACTGTCTGATTTA
ATGGCATGGGCTTGTAGTTAT

BO10187.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6755-PA 1932 EloA-RA 1127..1929 821..19 4015 100 Minus
CG6755-PB 1701 EloA-RB 896..1698 821..19 4015 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 1269..2071 821..19 4015 100 Minus
EloA-RA 2869 CG6755-RA 1441..2243 821..19 4015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23254017..23254310 388..95 1470 100 Minus
3R 32079331 3R 23253752..23253952 588..388 1005 100 Minus
3R 32079331 3R 23253404..23253542 821..683 695 100 Minus
3R 32079331 3R 23253600..23253695 683..588 480 100 Minus
3R 32079331 3R 23254368..23254445 96..19 390 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:26:02 has no hits.

BO10187.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:24 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-PA 1127..1932 18..821 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:41 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6755-PB 896..1701 18..821 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:08:17 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 1441..2243 19..821 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:41:50 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 1441..2243 19..821 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:41:50 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23253404..23253542 683..821 100 -> Minus
3R 23253601..23253695 588..682 100 -> Minus
3R 23253753..23253952 388..587 100 -> Minus
3R 23254018..23254309 96..387 100 -> Minus
3R 23254369..23254445 19..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:08:17 Download gff for BO10187.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19079126..19079264 683..821 100 -> Minus
arm_3R 19079323..19079417 588..682 100 -> Minus
arm_3R 19079475..19079674 388..587 100 -> Minus
arm_3R 19079740..19080031 96..387 100 -> Minus
arm_3R 19080091..19080167 19..95 100   Minus

BO10187.5prime Sequence

961 bp (872 high quality bases) assembled on 2006-04-19

> BO10187.5prime
GAAGTTATCAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTA
CGCCTACAGCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGC
GACGAGGATCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGA
GGACTTGAACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGC
ATGAGCGTAGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCG
GATAAGAAGCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAA
AGATCGGGAGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAA
ATGGCGAGCACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAG
AGCAGCAAATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGA
AAAGGACAAAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGA
GCAAACACAAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCC
CCACGCCACGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATC
GAAATCTGAGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAA
ATTTTGACGATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAG
AGCAGCAGCAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCC
TTCCTCGTCAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGG
CACTCTCAACTAGCAGTCGACCGACCTCCAAAAACCCGAACTGTTGGCAT
CCACAGCTAAGCTGGAGCCCTTGGATCAAACATTGCACTAGAACTTCCAC
CATATCCAATAACTACAAGCCCATGGCATTAAATCAGACAGTTATGGACG
TCGTCTTTACC

BO10187.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6755-PA 1932 EloA-RA 232..1049 17..834 4090 100 Plus
CG6755-PB 1701 EloA-RB 1..818 17..834 4090 100 Plus
CG6755-PA 1932 EloA-RA 1115..1177 897..959 290 98.4 Plus
CG6755-PB 1701 EloA-RB 884..946 897..959 290 98.4 Plus
CG6755-PA 1932 EloA-RA 1046..1093 830..877 240 100 Plus
CG6755-PB 1701 EloA-RB 815..862 830..877 240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 374..1319 17..959 4640 99.6 Plus
EloA-RA 2869 CG6755-RA 546..1491 17..959 4640 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23252399..23252837 17..455 2195 100 Plus
3R 32079331 3R 23252890..23253269 453..832 1900 100 Plus
3R 32079331 3R 23253325..23253454 832..959 535 97.7 Plus
Blast to na_te.dros performed 2015-02-11 10:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2386..2520 677..810 168 59.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2554 668..932 162 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6850 673..816 161 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2448 685..780 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6970 677..834 158 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6866 677..817 141 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2911 685..802 139 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6904 677..812 137 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6878 677..774 136 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2712 687..821 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6798 677..722 122 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6825..6948 677..796 116 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2611..2657 677..723 109 70.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6860..6897 685..722 109 76.3 Plus

BO10187.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:25 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-PA 227..1179 10..961 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:43:43 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6755-PB 1..948 17..961 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:48:40 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 541..1493 10..961 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:28 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 541..1493 10..961 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:28 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23252394..23252836 10..454 99 -> Plus
3R 23252892..23253269 455..831 99 -> Plus
3R 23253325..23253456 832..961 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:48:40 Download gff for BO10187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078116..19078558 10..454 99 -> Plus
arm_3R 19078614..19078991 455..831 99 -> Plus
arm_3R 19079047..19079178 832..961 96   Plus

BO10187.complete Sequence

1732 bp (1732 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631676

> BO10187.complete
GAAGTTATCAGTCGACATGGTGGCGAAGGAGGACCCTTCGATCGCATCTA
CGCCTACAGCCATACATAACGAAGAGGACTCGGGCAAGACCAAGTCCAGC
GACGAGGATCCCGACCAGGAGAACAAGGGCGGCAACTCATCCAGCGGCGA
GGACTTGAACACCAGCAAGCACAAGTCAAAGCATGCCAAGAGCACCAAGC
ATGAGCGTAGCAGCAGCAGCCGATCTCACTCCAAGAGTAGGTCTGACTCG
GATAAGAAGCACAAGAGCTCTCGCCACGATAAATCCAAGGATAGAGATAA
AGATCGGGAGGGTCAGAAGGAAGCTAAGGAGCACAAAGAAAAGAAGTCAA
ATGGCGAGCACAAGTCAAAGGATTCCAGCAAATCCAGCAGCAGTCACAAG
AGCAGCAAATCCGAGAGCCACAAGAGCGAACACACCAAAAGCAAGCACGA
AAAGGACAAAACTTCTCACAGTGAATTAAAGGAAGTCAAAGACAAGTCGA
GCAAACACAAATCATCGTCCTCCAAGTCATCAAAGCGCTCCCATAGTCCC
CCACGCCACGAGGAGGAGTCCCAAAAAGCAAAGATACCAAAAGTTAAATC
GAAATCTGAGGAAGATTCCGCTGATGGTTTTGACTCCAGCATGGGCGCAA
ATTTTGACGATGTTCTTGGTCTGCTAAACATACCCATAAGTAGCAAGAAG
AGCAGCAGCAACAGCAAGAGCAAGTTTGTCGCCAAGCCAACTGCAGCCCC
TTCCTCGTCAGCTCTATCAGCACCTACGACTGCTGGGTCATCTAAAGAGG
CACTCTCAACTAGCAGTCGACCGACCTCCAAAAAACCCGAACTGTTGGCA
TCCACAGCTAAGCTGGAGCCCTTGGATCCAAACATTGCACTAGAACTTCC
CACCATATCCAATAACTACAAGCCCATGCCATTAAATCAGACAGTTATGG
ACGTCGTCTTTAACCAGGGTGGCTCACACAAGGCGCAAGCATCACGATAC
TTTAATGAGTCAGAAGCTCTAGCGCAGGGCATCTCTTCCAAAACTATGCG
CACCAAGATCTATTCGGGTGTGAGAACTGGTCAAATCCTGCAGGTCCCTT
CCCTTTTTGATCTCTGCACCCGCGTGCTGCAAAAGAATATTGATGCATTG
GAGTATACGGGTGGCGTTCCGTTTGAGGTCCTACGTCCCGTTTTGGAGCG
AGCTACCCCCCAGCAGCTGCTTAACTTTGAGGAGTACAATCCTTATTTAA
TGGATGACAGTGATGTCCTATGGCAACAGCATGTCCAACGTCACTGTCGC
AGTCAGCGGCGTGAAGAGATGGAAACGTGGCGCGAAATGTTTTTGCGCTG
CCAAGAGGAAAAGGATCGCAAACTTAGCATTCTGGCCGAGAGCATCAAGG
CATCGCAAAAGATAAGCGAGGCGCCTGTGCGCAAGACGCAATTGGCCTTT
GTGGACTCAATGGTGAAGCCGCCGCGTAGTGTGCAGCGCAAGCAAGAGCA
ATATGGCACCAAGGGCAAGCTAATTGCCACTCCAGCCGCCCGAGTGGCCG
CCTTGTCCAGCGTGACTCCAAATGCAGCCAAGGTGGGCGATGCCCGACTA
CGTGTGCTGGCCGCTGCCAGGGACACGGCCCAAGTGGGGGCTGGACCAGC
GCGATCGAAGAAGGCACCTCTAATGGCGAAGACCTTGCAGTTTATGCGCG
GACGTCTCAAACGAGCAAGCTTTCTAGACCAT

BO10187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 1701 CG6755-PB 1..1698 17..1714 8490 100 Plus
EloA-RA 1932 CG6755-PA 232..1929 17..1714 8490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:04
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-RB 2697 CG6755-RB 374..2071 17..1714 8490 100 Plus
EloA-RA 2869 CG6755-RA 546..2243 17..1714 8490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23252399..23252837 17..455 2195 100 Plus
3R 32079331 3R 23252890..23253269 453..832 1900 100 Plus
3R 32079331 3R 23254017..23254310 1345..1638 1470 100 Plus
3R 32079331 3R 23253325..23253542 833..1050 1090 100 Plus
3R 32079331 3R 23253752..23253952 1145..1345 1005 100 Plus
3R 32079331 3R 23253600..23253695 1050..1145 480 100 Plus
3R 32079331 3R 23254368..23254445 1637..1714 390 100 Plus
Blast to na_te.dros performed 2014-11-26 16:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2386..2544 677..837 169 58.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6707..6850 673..816 161 60.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2448 685..780 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6807..6970 677..834 158 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2554 668..935 152 54.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6866 677..817 141 58.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2790..2911 685..802 139 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6774..6904 677..812 137 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6878 677..774 136 63.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2576..2712 687..821 130 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6798 677..722 122 73.9 Plus

BO10187.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:30 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 1..1701 17..1715 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:07 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 388..2090 10..1714 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:09 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 546..2243 17..1716 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:30 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RB 388..2090 10..1714 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:03 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
EloA-RA 546..2243 17..1716 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:03 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23253753..23253952 1146..1345 100 -> Plus
3R 23254018..23254309 1346..1637 100 -> Plus
3R 23254369..23254445 1638..1716 97   Plus
3R 23252399..23252836 17..454 100 -> Plus
3R 23252892..23253269 455..832 100 -> Plus
3R 23253325..23253542 833..1050 100 -> Plus
3R 23253601..23253695 1051..1145 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:09 Download gff for BO10187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19078121..19078558 17..454 100 -> Plus
arm_3R 19078614..19078991 455..832 100 -> Plus
arm_3R 19079047..19079264 833..1050 100 -> Plus
arm_3R 19079323..19079417 1051..1145 100 -> Plus
arm_3R 19079475..19079674 1146..1345 100 -> Plus
arm_3R 19079740..19080031 1346..1637 100 -> Plus
arm_3R 19080091..19080167 1638..1716 97   Plus

BO10187.pep Sequence

Translation from 16 to 1732

> BO10187.pep
MVAKEDPSIASTPTAIHNEEDSGKTKSSDEDPDQENKGGNSSSGEDLNTS
KHKSKHAKSTKHERSSSSRSHSKSRSDSDKKHKSSRHDKSKDRDKDREGQ
KEAKEHKEKKSNGEHKSKDSSKSSSSHKSSKSESHKSEHTKSKHEKDKTS
HSELKEVKDKSSKHKSSSSKSSKRSHSPPRHEEESQKAKIPKVKSKSEED
SADGFDSSMGANFDDVLGLLNIPISSKKSSSNSKSKFVAKPTAAPSSSAL
SAPTTAGSSKEALSTSSRPTSKKPELLASTAKLEPLDPNIALELPTISNN
YKPMPLNQTVMDVVFNQGGSHKAQASRYFNESEALAQGISSKTMRTKIYS
GVRTGQILQVPSLFDLCTRVLQKNIDALEYTGGVPFEVLRPVLERATPQQ
LLNFEEYNPYLMDDSDVLWQQHVQRHCRSQRREEMETWREMFLRCQEEKD
RKLSILAESIKASQKISEAPVRKTQLAFVDSMVKPPRSVQRKQEQYGTKG
KLIATPAARVAALSSVTPNAAKVGDARLRVLAAARDTAQVGAGPARSKKA
PLMAKTLQFMRGRLKRASFLDH

BO10187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
EloA-PB 566 CG6755-PB 1..566 1..566 2856 100 Plus
EloA-PA 643 CG6755-PA 78..643 1..566 2856 100 Plus
PNUTS-PA 628 CG33526-PA 225..461 18..269 239 31 Plus
PNUTS-PB 628 CG33526-PB 225..461 18..269 239 31 Plus
PNUTS-PE 1135 CG33526-PE 225..461 18..269 239 31 Plus
PNUTS-PA 628 CG33526-PA 282..518 17..281 223 30.9 Plus
PNUTS-PB 628 CG33526-PB 282..518 17..281 223 30.9 Plus
PNUTS-PA 628 CG33526-PA 171..415 38..271 173 28 Plus
PNUTS-PB 628 CG33526-PB 171..415 38..271 173 28 Plus