Clone Sequence Records
BO10194.3prime Sequence
941 bp (761 high quality bases) assembled on 2006-04-19
> BO10194.3prime
ATGGTCTAGAAAGCTTGCATTCCAGCGACTCTTCTTGGCTCTTTTGGCAT
CCTGGTTGCTGCTGTTGTTGGCCGATGAGGCGGAAGCACCCTGTGTTGAT
GATGAGGGCGGTGCCATTGGCGCAGCGAAAACTCCCGACTCCGGCAGAGT
TTTCTCCCAAGTGCGATCGCTGGACGCACGGAACTGATTGTTATACTGGG
ATCGGAATGCCTCCCTCATTGCTGTATAGCGATCTGTGGCTGGTCCCGAG
CTCGAAAAGGCTTTGCTAGAGGGTCCGTCGGAAGGACTGTGGGCAGACAC
ACTCGCAGTGGACTCCGAGCCACCAGCCGAACCATAGCCACCACCTCCAT
TTCCTTTCTCCCGATAGCCCAATCCTGTGTGGGTATTTGTTGGTCTCTTG
CCTTTGCCCTGCTTGAAGCGTGAGCTGCGGAACCAGGAACTCTTCATGGC
CAGCTCCATCAGATCGTCGGGCACCAGCTGATCGGCTCCCTCCAAGTTAC
GCACCAGATGTCCGGCGAACTCCTTGTCCTTATCGGTGACTAGAGTGTAT
GCATTACCCTTTTCACCGGCTCTGCCCGTTCTTCCAATTCTGTGCGTGTG
GGTTTCAATGTCCCTGGCTGTGTCGTAGTTTACCACATTCCTAATATGGG
GTATATCCAATCCTCTGGCTGCCACGTCGGTGGCCACTAGAATATCGCAC
TCTTTTCTCTTAAACTGAGTGATGACCTTGTTTCTGTCCGCTTGGTCCAT
ATCGCCGTGGAGTAAAAGACAATTGTACTCCTTAATTAAAAGATTGTTAG
ACACCGTTTCAGCATCTACTTTTTTAGTCACAAAGATCAGGACACTTCCT
TCGGAAAGGAACTCACCAGATGGCACAGCAGCCAATTCCATTTCTGCAGG
GGATTGGGGAGACGTACACAGACTGTGTAATGTCCTGATTG
BO10194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-PB | 2376 | CG6418-RB | 1529..2373 | 863..19 | 4225 | 100 | Minus |
| CG6418-PB | 2376 | CG6418-RB | 1481..1528 | 910..863 | 240 | 100 | Minus |
| CG6418-PB | 2376 | CG6418-RB | 1449..1480 | 941..910 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-RB | 2723 | CG6418-RB | 1541..2465 | 941..19 | 4575 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10876573..10877497 | 19..941 | 4525 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:32:48 has no hits.
BO10194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:37 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-PB | 1449..2376 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:00 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-PB | 1449..2376 | 16..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 21:44:43 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 1541..2469 | 15..941 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:49:24 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 1541..2469 | 15..941 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:49:24 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10876569..10877497 | 15..941 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 21:44:43 Download gff for
BO10194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10869669..10870597 | 15..941 | 99 | | Plus |
BO10194.5prime Sequence
834 bp (783 high quality bases) assembled on 2006-04-19
> BO10194.5prime
GAAGTTATCAGTCGACATGAGTGGATATCGAGGCATTGGCGGTGGGGGCT
TCCCCTACCGCAAGCCAGCAAGTTCCGGCAACAACATGAACGCCGTACCG
CCGCCCCCGATGCTGAATGCCCGTGGCTATTCTGGTTCCCGCGGAGGATT
TGGAGGAGCAAGCCGTGGCGGTGTCACCGGGAGCACTACATCAACGTCCA
AGCACGGCTACTCCACCTTGGACTCCATCAGCCAGTACACCAATGCCACC
AATCTGGTTGGCAAAAGGAAGCACCACACGGACGATGACTATTTCGATGA
TGACGATGAGCCCCGGGAAAAGGAGATAGAACAAGCCTATATACCGGCAC
CAGGATCCCCGGGAGCTCCGCCAACGTCGGCCAAAAAGCAAGAGGATTCC
GATTCGGATGAGGATCCCCTCGAGCAGTTCATGGCGGGCATCAACCAGCA
GGTGGAGAAGGAGAAGCGTCAACAAGCACCTAAGCCGCCAACTCAGGCGG
TGAGAGGTGACATCGATGACGAGGACGATGAGGAGAGCTACTATCGCTAC
ATGAAGGAGAATCCCAATGCTGGACTTCGCGACGAGGGATCCGATCAGGA
AATCGAATACGATGAGGATGGCAATCCCATAGCCCCACCGAAGAAAAAGG
ACATTGATCCTCTGCCGCCCATCTACCATTCCGAAATCGAGTACGAACCC
TTCGAGAAGAACTTCTACACGCAGCATGACGACATAGCCGCCCTGGATGA
TGAGCAAGTCCGGGAATTAAGGCGCACACTTGGCGTAAAGGTCACTGGTC
CATCACCACCCAAACCAGTCACGTCCTTCGGCCA
BO10194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-PB | 2376 | CG6418-RB | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:13:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-RB | 2723 | CG6418-RB | 93..910 | 17..834 | 4090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10878128..10878945 | 834..17 | 4090 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:13:29 has no hits.
BO10194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:38 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-PB | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:01 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-PB | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:56:45 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 83..909 | 5..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:43:42 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 83..909 | 5..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:43:42 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10878129..10878955 | 5..833 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:56:45 Download gff for
BO10194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10871229..10872055 | 5..833 | 99 | | Minus |
BO10194.complete Sequence
2407 bp (2407 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631678
> BO10194.complete
GAAGTTATCAGTCGACATGAGTGGATATCGAGGCATTGGCGGTGGGGGCT
TCCCCTACCGCAAGCCAGCAAGTTCCGGCAACAACATGAACGCCGTACCG
CCGCCCCCGATGCTGAATGCCCGTGGCTATTCTGGTTCCCGCGGAGGATT
TGGAGGAGCAAGCCGTGGCGGTGTCACCGGGAGCACTACATCAACGTCCA
AGCACGGCTACTCCACCTTGGACTCCATCAGCCAGTACACCAATGCCACC
AATCTGGTTGGCAAAAGGAAGCACCACACGGACGATGACTATTTCGATGA
TGACGATGAGCCCCGGGAAAAGGAGATAGAACAAGCCTATATACCGGCAC
CAGGATCCCCGGGAGCTCCGCCAACGTCGGCCAAAAAGCAAGAGGATTCC
GATTCGGATGAGGATCCCCTCGAGCAGTTCATGGCGGGCATCAACCAGCA
GGTGGAGAAGGAGAAGCGTCAACAAGCACCTAAGCCGCCAACTCAGGCGG
TGAGAGGTGACATCGATGACGAGGACGATGAGGAGAGCTACTATCGCTAC
ATGAAGGAGAATCCCAATGCTGGACTTCGCGACGAGGGATCCGATCAGGA
AATCGAATACGATGAGGATGGCAATCCCATAGCCCCACCGAAGAAAAAGG
ACATTGATCCTCTGCCGCCCATCTACCATTCCGAAATCGAGTACGAACCC
TTCGAGAAGAACTTCTACACGCAGCATGACGACATAGCCGCCCTGGATGA
TGAGCAAGTCCGGGAATTAAGGCGCACACTTGGCGTAAAGGTCACTGGTC
CATCACCACCCAAACCAGTCACGTCCTTCGGCCATTTCGGCTTTGATGAG
CAACTCATCAAGGCCGTGAGGAAAGCGGAGTATACACAGCCCACACCCAT
CCAGGCACAAGCAGTGCCCACCGCCCTGTCCGGCAGAGACATCATTGGCA
TAGCCAAAACTGGTTCCGGTAAGACAGCAGCTTTCATCTGGCCGATGCTA
ATGCATGTGATGGATCAGAAACAGCTGAAGCCAGGCGACGGACCCATAGG
ACTTATCCTAGCACCTACACGCGAGCTTTCCCTGCAGATCTACAACGAGG
CCAAGAAGTTTGGCAAGGTCTACAACCTGAACGTGGTCTGCTGCTACGGC
GGAGGCTCCAAATGGGAGCAAAGTAAAGCTCTGGAACAGGGAGCGGAAAT
TATTGTGGCCACGCCAGGACGTATGATAGATATGGTCAAGATGAAGGCCA
CCAATCTGAGGAGGGTCACTTTCCTAGTGCTTGACGAGGCCGACCGTATG
TTCCACATGGGCTTTGAGCCCCAGGTTCGCTCCATCTGCAACCACGTGCG
TCCAGATCGTCAATGCCTAATGTTTTCGGCCACCTTTAAGAAGCGAATTG
AACGTCTGGCCAGAGATGTGCTTTCCGATCCCGTGAGAATAGTGCAGGGA
GACCTGAACGAGGCCAATCAGGACATTACACAGTCTGTGTACGTCTTCCC
CAATCCCCTGCAGAAATGGAATTGGCTGCTGTGCCATCTGGTGAAGTTCC
TTTCCGAAGGAAGTGTCCTGATCTTTGTGACTAAAAAAGTAGATGCTGAA
ACGGTGTCTAACAATCTTTTAATTAAGGAGTACAATTGTCTTTTACTCCA
CGGCGATATGGACCAAGCGGACAGAAACAAGGTCATCACTCAGTTTAAGA
GAAAAGAGTGCGATATTCTAGTGGCCACCGACGTGGCAGCCAGAGGATTG
GATATACCCCATATTAGGAATGTGGTAAACTACGACACAGCCAGGGACAT
TGAAACCCACACGCACAGAATTGGAAGAACGGGCAGAGCCGGTGAAAAGG
GTAATGCATACACTCTAGTCACCGATAAGGACAAGGAGTTCGCCGGACAT
CTGGTGCGTAACTTGGAGGGAGCCGATCAGCTGGTGCCCGACGATCTGAT
GGAGCTGGCCATGAAGAGTTCCTGGTTCCGCAGCTCACGCTTCAAGCAGG
GCAAAGGCAAGAGACCAACAAATACCCACACAGGATTGGGCTATCGGGAG
AAAGGAAATGGAGGTGGTGGCTATGGTTCGGCTGGTGGCTCGGAGTCCAC
TGCGAGTGTGTCTGCCCACAGTCCTTCCGACGGACCCTCTAGCAAAGCCT
TTTCGAGCTCGGGACCAGCCACAGATCGCTATACAGCAATGAGGGAGGCA
TTCCGATCCCAGTATAACAATCAGTTCCGTGCGTCCAGCGATCGCACTTG
GGAGAAAACTCTGCCGGAGTCGGGAGTTTTCGCTGCGCCAATGGCACCGC
CCTCATCATCAACACAGGGTGCTTCCGCCTCATCGGCCAACAACAGCAGC
AACCAGGATGCCAAAAGAGCCAAGAAGAGTCGCTGGAATGCAAGCTTTCT
AGACCAT
BO10194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-RB | 2376 | CG6418-PB | 1..2373 | 17..2389 | 11865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-RB | 2723 | CG6418-RB | 93..2465 | 17..2389 | 11865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:40:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10876573..10878945 | 2389..17 | 11865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:40:02 has no hits.
BO10194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:10 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 1..2376 | 17..2392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:45 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 81..2467 | 5..2393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:11 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 93..2465 | 17..2391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:10 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 81..2467 | 5..2393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:31 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6418-RB | 93..2465 | 17..2391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:31 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10876570..10878945 | 17..2391 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:11 Download gff for
BO10194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10869670..10872045 | 17..2391 | 99 | | Minus |
BO10194.pep Sequence
Translation from 16 to 2407
> BO10194.pep
MSGYRGIGGGGFPYRKPASSGNNMNAVPPPPMLNARGYSGSRGGFGGASR
GGVTGSTTSTSKHGYSTLDSISQYTNATNLVGKRKHHTDDDYFDDDDEPR
EKEIEQAYIPAPGSPGAPPTSAKKQEDSDSDEDPLEQFMAGINQQVEKEK
RQQAPKPPTQAVRGDIDDEDDEESYYRYMKENPNAGLRDEGSDQEIEYDE
DGNPIAPPKKKDIDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDEQVRE
LRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAV
PTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAP
TRELSLQIYNEAKKFGKVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATP
GRMIDMVKMKATNLRRVTFLVLDEADRMFHMGFEPQVRSICNHVRPDRQC
LMFSATFKKRIERLARDVLSDPVRIVQGDLNEANQDITQSVYVFPNPLQK
WNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLLLHGDMDQ
ADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTH
RIGRTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK
SSWFRSSRFKQGKGKRPTNTHTGLGYREKGNGGGGYGSAGGSESTASVSA
HSPSDGPSSKAFSSSGPATDRYTAMREAFRSQYNNQFRASSDRTWEKTLP
ESGVFAAPMAPPSSSTQGASASSANNSSNQDAKRAKKSRWNASFLDH
BO10194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6418-PB | 791 | CG6418-PB | 1..791 | 1..791 | 4172 | 100 | Plus |
| CG6227-PA | 1224 | CG6227-PA | 340..915 | 98..680 | 1041 | 38.1 | Plus |
| CG10077-PD | 818 | CG10077-PD | 104..586 | 216..695 | 906 | 39.6 | Plus |
| CG10077-PA | 818 | CG10077-PA | 104..586 | 216..695 | 906 | 39.6 | Plus |
| CG10777-PC | 945 | CG10777-PC | 153..693 | 178..716 | 889 | 36.6 | Plus |
