Clone Sequence Records
BO10201.3prime Sequence
878 bp (808 high quality bases) assembled on 2006-04-19
> BO10201.3prime
ATGGTCTAGAAAGCTTGCCTCCTGGTGCTTTGACTTTTTCTTTTTCTTTG
CTGGTGTTGGCTGATCCTCGGGCTCTGGTGCTGCCGCCTCCTCAACGGCC
TCCACCTCTTCGTCCTTCTGCTTCTTCTTCTTTTTCTTCTTCTTCTCGGA
CTTGACCTCCGCCTCCTCCTCAGCAGGTTCCTCCTTCTTAACAGGCGTCT
GCTGTTCGGACTCGGAGTGCTTGCGCTTCTTCTTCACGTTCAAGGTGTTG
TCGGCCTCTGGTTGGTAGGTGAACACCTCGCTCTTGGCCTGGTACTTCTC
GAACTTGGCCTTGGCCTTGCCGGTGCCGGAGAGTTTGCGCAGGTTGCCCT
CCTCCAGGAGTCGCAGCCGAGACTCCAGTTTAACCTTGTGAGCCGCTCCT
AGCTCAAAGGTAGCCTCTTCGCCAAAGGCATCAACACGCGTGGCAAGCGA
CGCTTTGGCGGCCAGTGAACGCGACATTTTGCCCTTGTTCTTCTGGCTTG
CCTGTCCCACCAACTGGGCGTGATAGATCAAACCGTACTTTGGAGTATCC
TTCTTGGTCTTCAGCGCACGGAAGAGTGCTTTCTCGGCGCCCAGAATTTG
TACAGTAGATGAGGGATGCTTGGCCAGGTTAATCAGCGAGCCAGCATGGG
CAATCAGTCGAGCGCCGACGGTGTCGCCCACGAGCACTGTCAAATTCGGA
GCCATGGCCATCATTCTGGCCTTCAAGTAGTCGTACAAGTGGGTGCGGTA
ATCGTTGATCGATATGATCTCGTCGCACAGACACTGAATGTTCAGCACAT
CCTCCTCGGAGATTTCGGTACCCATAGAGATCTCAGCTGCCTCCTTGACC
TTTTCCTCCACATCTTCTGGCAGAATGT
BO10201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10206-PA | 1536 | nop5-RA | 674..1533 | 878..19 | 4300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 806..1665 | 878..19 | 4300 | 100 | Minus |
| Nop56-RA | 1746 | CG13849-RA | 1025..1212 | 669..482 | 220 | 75.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:43:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917341..6917938 | 281..878 | 2990 | 100 | Plus |
| 2L | 23513712 | 2L | 6916901..6917164 | 19..282 | 1320 | 100 | Plus |
| 3R | 32079331 | 3R | 22419629..22419816 | 482..669 | 220 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:44:04 has no hits.
BO10201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:43 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-PA | 674..1536 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:08 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10206-PA | 674..1536 | 15..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:53:44 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 806..1672 | 9..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:42 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 806..1672 | 9..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:42 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6916894..6917162 | 9..280 | 98 | <- | Plus |
| 2L | 6917341..6917938 | 281..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:53:44 Download gff for
BO10201.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6916894..6917162 | 9..280 | 98 | <- | Plus |
| arm_2L | 6917341..6917938 | 281..878 | 100 | | Plus |
BO10201.5prime Sequence
877 bp (751 high quality bases) assembled on 2006-04-19
> BO10201.5prime
GAAGTTATCAGTCGACATGTTTGTGCTCTACGAAACGCCGGCGGGCTACG
CGATTTTCAAGCTGCTGGACGAAAAGAAACTGGAGCAGGTGGACAATCTG
TACCAGGAGTTTGAGACTCCGGAGAAGGCCAACAAGCTGCTGAAGCTGAA
GCACTTTGAGAAATTCAATGACACCACAGAGGCGCTGGCCGCTGCAACGG
CGGCGGTGGAGGGCAAGGTAGCCAAGCCGCTGAAAAAGACACTCAAGAAG
CTGCTCGTTGACGACGTGCAGTCTTCGCTCTTGGTTGCCGATGCCAAACT
GGGCACAGCCATCAAGGACAAACTGTCGGTACAGTGTGTCTGCAACACTG
GCGTCCAGGAGCTGATGCGCTGTATTCGCCAGCAGGCGGACAGTCTGCTT
GGTGGTCTGCCCAAGCGTGAGATGACCGCCATGGCCCTGGGTCTTGCCCA
CTCCTTGTCGCGCTACAAGCTTAAGTTCTCGCCCGACAAGATCGACACAA
TGATTGTGCAGGCCCAGTGCTTGCTGGATGACCTGGACAAGGAGTTGAAC
AACTACATGATGCGTGCACGCGAGTGGTACGGTTGGCACTTTCCCGAGCT
GGGCAAGATTATTACCGACAACATTGCCTTCGTGAAGACCATCAAGTTGG
TGGGCACCAGGGATAATATGGCCACAAGCGATCTGTCCGACATTCTGCCA
GAAGATGTGGAGGAAAAGGTCAAGGAGGCAGCTGAGATCTCTATGGGTAC
CGAAATCTCCGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGA
TCATATCGATCAACGATTACCGCACCCACTTGTACGACTACTTGAAGGCC
AGAATGATGGCCATGGCTCCGAATTTG
BO10201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10206-PA | 1536 | nop5-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 133..993 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917751..6918611 | 877..17 | 4305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:58:22 has no hits.
BO10201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:44 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:10 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10206-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:42:18 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 129..993 | 13..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:27:46 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 129..993 | 13..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:27:46 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6917751..6918614 | 11..877 | 99 | -- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:42:18 Download gff for
BO10201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6917751..6918614 | 11..877 | 99 | -- | Minus |
BO10201.complete Sequence
1567 bp (1567 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631679
> BO10201.complete
GAAGTTATCAGTCGACATGTTTGTGCTCTACGAAACGCCGGCGGGCTACG
CGATTTTCAAGCTGCTGGACGAAAAGAAACTGGAGCAGGTGGACAATCTG
TACCAGGAGTTTGAGACTCCGGAGAAGGCCAACAAGCTGCTGAAGCTGAA
GCACTTTGAGAAATTCAATGACACCACAGAGGCGCTGGCCGCTGCAACGG
CGGCGGTGGAGGGCAAGGTAGCCAAGCCGCTGAAAAAGACACTCAAGAAG
CTGCTCGTTGACGACGTGCAGTCTTCGCTCTTGGTTGCCGATGCCAAACT
GGGCACAGCCATCAAGGACAAACTGTCGGTACAGTGTGTCTGCAACACTG
GCGTCCAGGAGCTGATGCGCTGTATTCGCCAGCAGGCGGACAGTCTGCTT
GGTGGTCTGCCCAAGCGTGAGATGACCGCCATGGCCCTGGGTCTTGCCCA
CTCCTTGTCGCGCTACAAGCTTAAGTTCTCGCCCGACAAGATCGACACAA
TGATTGTGCAGGCCCAGTGCTTGCTGGATGACCTGGACAAGGAGTTGAAC
AACTACATGATGCGTGCACGCGAGTGGTACGGTTGGCACTTTCCCGAGCT
GGGCAAGATTATTACCGACAACATTGCCTTCGTGAAGACCATCAAGTTGG
TGGGCACCAGGGATAATATGGCCACAAGCGATCTGTCCGACATTCTGCCA
GAAGATGTGGAGGAAAAGGTCAAGGAGGCAGCTGAGATCTCTATGGGTAC
CGAAATCTCCGAGGAGGATGTGCTGAACATTCAGTGTCTGTGCGACGAGA
TCATATCGATCAACGATTACCGCACCCACTTGTACGACTACTTGAAGGCC
AGAATGATGGCCATGGCTCCGAATTTGACAGTGCTCGTGGGCGACACCGT
CGGCGCTCGACTGATTGCCCATGCTGGCTCGCTGATTAACCTGGCCAAGC
ATCCCTCATCTACTGTACAAATTCTGGGCGCCGAGAAAGCACTCTTCCGT
GCGCTGAAGACCAAGAAGGATACTCCAAAGTACGGTTTGATCTATCACGC
CCAGTTGGTGGGACAGGCAAGCCAGAAGAACAAGGGCAAAATGTCGCGTT
CACTGGCCGCCAAAGCGTCGCTTGCCACGCGTGTTGATGCCTTTGGCGAA
GAGGCTACCTTTGAGCTAGGAGCGGCTCACAAGGTTAAACTGGAGTCTCG
GCTGCGACTCCTGGAGGAGGGCAACCTGCGCAAACTCTCCGGCACCGGCA
AGGCCAAGGCCAAGTTCGAGAAGTACCAGGCCAAGAGCGAGGTGTTCACC
TACCAACCAGAGGCCGACAACACCTTGAACGTGAAGAAGAAGCGCAAGCA
CTCCGAGTCCGAACAGCAGACGCCTGTTAAGAAGGAGGAACCTGCTGAGG
AGGAGGCGGAGGTCAAGTCCGAGAAGAAGAAGAAAAAGAAGAAGAAGCAG
AAGGACGAAGAGGTGGAGGCCGTTGAGGAGGCGGCAGCACCAGAGCCCGA
GGATCAGCCAACACCAGCAAAGAAAAAGAAAAAGTCAAAGCACCAGGAGG
CAAGCTTTCTAGACCAT
BO10201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1536 | CG10206-PA | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| Nop56-RA | 1491 | CG13849-PA | 913..1100 | 899..1086 | 220 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-RA | 1813 | CG10206-RA | 133..1665 | 17..1549 | 7665 | 100 | Plus |
| Nop56-RA | 1746 | CG13849-RA | 1025..1212 | 899..1086 | 220 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6917341..6918611 | 1287..17 | 6355 | 100 | Minus |
| 2L | 23513712 | 2L | 6916901..6917164 | 1549..1286 | 1320 | 100 | Minus |
| 3R | 32079331 | 3R | 22419629..22419816 | 1086..899 | 220 | 74.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:03:59 has no hits.
BO10201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:31 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 1..1536 | 17..1553 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:17 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 127..1670 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:24 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 139..1665 | 23..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:31 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 127..1670 | 13..1559 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:56 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nop5-RA | 139..1665 | 23..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:56 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6916899..6917162 | 1288..1551 | 99 | <- | Minus |
| 2L | 6917341..6918605 | 23..1287 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:24 Download gff for
BO10201.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6916899..6917162 | 1288..1551 | 99 | <- | Minus |
| arm_2L | 6917341..6918605 | 23..1287 | 100 | | Minus |
BO10201.pep Sequence
Translation from 16 to 1567
> BO10201.pep
MFVLYETPAGYAIFKLLDEKKLEQVDNLYQEFETPEKANKLLKLKHFEKF
NDTTEALAAATAAVEGKVAKPLKKTLKKLLVDDVQSSLLVADAKLGTAIK
DKLSVQCVCNTGVQELMRCIRQQADSLLGGLPKREMTAMALGLAHSLSRY
KLKFSPDKIDTMIVQAQCLLDDLDKELNNYMMRAREWYGWHFPELGKIIT
DNIAFVKTIKLVGTRDNMATSDLSDILPEDVEEKVKEAAEISMGTEISEE
DVLNIQCLCDEIISINDYRTHLYDYLKARMMAMAPNLTVLVGDTVGARLI
AHAGSLINLAKHPSSTVQILGAEKALFRALKTKKDTPKYGLIYHAQLVGQ
ASQKNKGKMSRSLAAKASLATRVDAFGEEATFELGAAHKVKLESRLRLLE
EGNLRKLSGTGKAKAKFEKYQAKSEVFTYQPEADNTLNVKKKRKHSESEQ
QTPVKKEEPAEEEAEVKSEKKKKKKKKQKDEEVEAVEEAAAPEPEDQPTP
AKKKKKSKHQEASFLDH
BO10201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:28:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nop5-PA | 511 | CG10206-PA | 1..511 | 1..511 | 2575 | 100 | Plus |
| Nop56-PA | 496 | CG13849-PA | 4..495 | 1..487 | 850 | 40.2 | Plus |
| Prp31-PA | 501 | CG6876-PA | 100..341 | 162..401 | 323 | 31 | Plus |
