Clone Sequence Records
BO10203.3prime Sequence
975 bp (776 high quality bases) assembled on 2006-04-19
> BO10203.3prime
ATGGTCTAGAAAGCTTGCCTTCATCTTTTTCTGATGCAGCAGATGTTTTC
TCAGCGCCTGCTGCTTGTCCTTGAAGCTCTTCTTAACCTTGGAGCGAGCC
TTGTGTCGCAGCATGCCAAAGTTCTTGGTTTTGCGCTTCTCGCGGTTCGT
CTTGGAACAGTGCTCGTTCACGCGCCCATCCTTCCAGCCAAAGCGCTCGC
GATCCTGCCGGCCCGCCTGCACAGTCTCCAGCCGCGACTCCTTGTCGTGC
TTGCGCTTCTTGTAGATCATCTCGATGCTGTTCAGCTTGACGAACTCGGC
GCGATCCTGTTCAAGTGGTCTCTTGCGGGCACTGGTTACGGTCTTCTTAA
GATTAGCCGCGTTGATGCGCTTGAAATCTTCGTCCGTGAATATGCGAGTA
AGAGCCAGTTCCTGTGCAGCCTCCTTTTGGTTAAGGATCCTCATATCTTT
CTTTTCCTTCTTGGCCTTTGCGGACTCTTCGCCACTTTCCACGCCTTCGT
CGGAATTATCTTCATCCTCATTCTCCTCGTCATTACTGTTCTCTTCGTCT
TCGTCTTCGTCATCATCGTCCTCATCCTCATCTTCGTCTTCTTCATCATC
GTCCGCTCCACCACCCTCACCATCACTGTGCGCCACGTTAACCCATTCAC
CATCGTTTGAGTCCGTATCGTCTTCGCTCTCTATGTCAATAGTCTTAGAG
TCCTTGAGCAGAGCCTCTGCACCCAAGACAGTGTCGTGGACTTCGCGCTC
TCCGTAGGCTCGAACCTTTCGTTCGGCCTGGGCCTCTGTCTGCCTGCCTC
GGTCCTTTTTGTGCAACAGGGCAGGCAGCTGTTCCCTGTAGAGTGTGATT
AGCGACCGTGCCGCCATCATCACCGACTTCTCCTTGTACGTTTTGTACAT
TGCCAGGTTCTGCAGCAAATCCTCGCCCATGGCCAGGGGACATCGCATGC
AAATCTCACGCGTCGCATTCAGACC
BO10203.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8070-PA | 2139 | Mys45A-RA | 1180..2136 | 975..19 | 4760 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 1260..2216 | 975..19 | 4770 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9111674..9112630 | 19..975 | 4770 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-01 09:54:48 has no hits.
BO10203.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:47 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1180..2139 | 18..975 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:14 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1180..2139 | 18..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:22:23 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1260..2216 | 19..975 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:00:07 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1260..2216 | 19..975 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:00:07 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9111674..9112630 | 19..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:22:23 Download gff for
BO10203.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4999179..5000135 | 19..975 | 99 | | Plus |
BO10203.5prime Sequence
809 bp (772 high quality bases) assembled on 2006-04-19
> BO10203.5prime
GAAGTTATCAGTCGACATGGTGCGGCCCAACAACAACCAGCTGCCGGAGA
ACCTTCCGCAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAGC
GATGAGTTCCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTTT
TGCGCTGAATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATGT
TTGTCGCCCAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCCA
AAGCGTCTTTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGGC
TATGCGTAACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAACC
TAGTGCCCGCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTGT
CCGGACAAGAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACAT
CAAGAATATGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTGC
AGGCATTCATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAAG
ATGTCCGCTGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATGA
TTCTAAGACGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTAA
CAAAAGTACTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGAG
GATGAAGAGGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTGC
TCTGATGGCCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAAC
TGGCGCAGA
BO10203.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8070-PA | 2139 | Mys45A-RA | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..873 | 16..809 | 3970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9113395..9113872 | 493..16 | 2390 | 100 | Minus |
| 2R | 25286936 | 2R | 9113017..9113333 | 809..493 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:20:49 has no hits.
BO10203.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:32:47 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:16 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8070-PA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:44 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..872 | 8..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:03:33 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 76..872 | 8..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:03:33 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9113018..9113332 | 494..808 | 100 | <- | Minus |
| 2R | 9113395..9113876 | 8..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:44 Download gff for
BO10203.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5000523..5000837 | 494..808 | 100 | <- | Minus |
| arm_2R | 5000900..5001381 | 8..493 | 99 | | Minus |
BO10203.complete Sequence
2170 bp (2170 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631680
> BO10203.complete
GAAGTTATCAGTCGACATGGTGCGGCCCAACAACAACCAGCTGCCGGAGA
ACCTTCCGCAGTTGCAGAACCTCATCAAGCGGGATCCGGAGTCGTATAGC
GATGAGTTCCACATCCAGTACCAACACTTTCTTAGCTTGCTGGAAGTTTT
TGCGCTGAATCCCAGCGAAGAAAACAAATCCCTGGATGACATCGTCATGT
TTGTCGCCCAGGTGGCTCAGTGCTATCCGGCCGTCTGCGAGGAGTTCCCA
AAGCGTCTTTCCGATTTGCTGAAGAACTATGCCACCGTTCTGGACCCGGC
TATGCGTAACTGCTTTGTGAAAGCTCTAATCCTGCTGAGAAACAAGAACC
TAGTGCCCGCGCTGGACATACTGGAACTGTTCTTTCAGTTGCTGCGGTGT
CCGGACAAGAATCTGCGCACCTTTCTGCAAACGCACATTGTGACGGACAT
CAAGAATATGAATGCCAAGCACAAGGACATGAAGCTCAATTCGAGCCTGC
AGGCATTCATGTACTCCATGCTGAAGGATGCCAATCCGAAGGCAGCCAAG
ATGTCCGCTGATATCATGATCGAGCTGTACAAGAAAAACATATGGAATGA
TTCTAAGACGGTGAATGTCATAGCCACTGTGGGGTGCTTCTCTAAGGTAA
CAAAAGTACTGGTCACCTCGCTCAAGTTCTTCCTCGGCCACGACGAAGAG
GATGAAGAGGAGGACACTGACAGCGAGAACGAGGTGGACCTTAAGGGTGC
TCTGATGGCCAATCGAGTCAATAAGAAAACCAAGAAGCGGACCAAGCAAC
TGGCGCAGATCAAAAAGCAAGCGGTGAAGGCCCAGAAAAAGAAAAAGAAC
GCTCCAGCCTTTAACTTCTCAGGCATTCACCTGGTGCACAATCCGCAGGG
AATGGCCGAAGGGCTCTTTAAGCAGCTGCAGGCCACCAACGAGCGATTTG
AGGTGAAGCTAATGCATTTGGACGTTATTTCCCGGCTGATCGGCATCCAC
GACCTCTTCCTTTTCGGTTTCTATCCGTACATAACACGCTTTCTGCAACC
CCACCAACGCCAGGTGACACGTGTGCTCCAGTTTGCCGCCCAAGCGTCCC
ACGAACTGGTTCCCGGAGACATCATCGAGCCTATCCTAAAGACGATCGCC
AACAACTTCATTACTGAACGCAACTCCAGCGATGTGATGGCCATAGGTCT
GAATGCGACGCGTGAGATTTGCATGCGATGTCCCCTGGCCATGGGCGAGG
ATTTGCTGCAGGACCTGGCAATGTACAAAACGTACAAGGAGAAGTCGGTG
ATGATGGCGGCACGGTCGCTAATCACACTCTACAGGGAACAGCTGCCTGC
CCTGTTGCACAAAAAGGACCGAGGCAGGCAGACAGAGGCCCAGGCCGAAC
GAAAGGTTCGAGCCTACGGAGAGCGCGAAGTCCACGACACTGTCTTGGGT
GCAGAGGCTCTGCTCAAGGACTCTAAGACTATTGACATAGAGAGCGAAGA
CGATACGGACTCAAACGATGGTGAATGGGTTAACGTGGCGCACAGTGATG
GTGAGGGTGGTGGAGCGGACGATGATGAAGAAGACGAAGATGAGGATGAG
GACGATGATGACGAAGACGAAGACGAAGAGAACAGTAATGACGAGGAGAA
TGAGGATGAAGATAATTCCGACGAAGGCGTGGAAAGTGGCGAAGAGTCCG
CAAAGGCCAAGAAGGAAAAGAAAGATATGAGGATCCTTAACCAAAAGGAG
GCTGCACAGGAACTGGCTCTTACTCGCATATTCACGGACGAAGATTTCAA
GCGCATCAACGCGGCTAATCTTAAGAAGACCGTAACCAGTGCCCGCAAGA
GACCACTTGAACAGGATCGCGCCGAGTTCGTCAAGCTGAACAGCATCGAG
ATGATCTACAAGAAGCGCAAGCACGACAAGGAGTCGCGGCTGGAGACTGT
GCAGGCGGGCCGGCAGGATCGCGAGCGCTTTGGCTGGAAGGATGGGCGCG
TGAACGAGCACTGTTCCAAGACGAACCGCGAGAAGCGCAAAACCAAGAAC
TTTGGCATGCTGCGACACAAGGCTCGCTCCAAGGTTAAGAAGAGCTTCAA
GGACAAGCAGCAGGCGCTGAGAAAACATCTGCTGCATCAGAAAAAGATGA
AGGCAAGCTTTCTAGACCAT
BO10203.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2139 | CG8070-PA | 1..2136 | 17..2152 | 10680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-RA | 2385 | CG8070-RA | 80..2216 | 16..2152 | 10685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9111674..9113333 | 2152..493 | 8300 | 100 | Minus |
| 2R | 25286936 | 2R | 9113395..9113872 | 493..16 | 2390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:53:02 has no hits.
BO10203.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:21 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 1..2139 | 17..2153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:55 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 78..2218 | 8..2152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:45 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 81..2216 | 17..2154 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:21 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 78..2218 | 8..2152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:03 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mys45A-RA | 81..2216 | 17..2154 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:03 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9111672..9113332 | 494..2154 | 99 | <- | Minus |
| 2R | 9113395..9113871 | 17..493 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:45 Download gff for
BO10203.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4999177..5000837 | 494..2154 | 99 | <- | Minus |
| arm_2R | 5000900..5001376 | 17..493 | 100 | | Minus |
BO10203.pep Sequence
Translation from 16 to 2170
> BO10203.pep
MVRPNNNQLPENLPQLQNLIKRDPESYSDEFHIQYQHFLSLLEVFALNPS
EENKSLDDIVMFVAQVAQCYPAVCEEFPKRLSDLLKNYATVLDPAMRNCF
VKALILLRNKNLVPALDILELFFQLLRCPDKNLRTFLQTHIVTDIKNMNA
KHKDMKLNSSLQAFMYSMLKDANPKAAKMSADIMIELYKKNIWNDSKTVN
VIATVGCFSKVTKVLVTSLKFFLGHDEEDEEEDTDSENEVDLKGALMANR
VNKKTKKRTKQLAQIKKQAVKAQKKKKNAPAFNFSGIHLVHNPQGMAEGL
FKQLQATNERFEVKLMHLDVISRLIGIHDLFLFGFYPYITRFLQPHQRQV
TRVLQFAAQASHELVPGDIIEPILKTIANNFITERNSSDVMAIGLNATRE
ICMRCPLAMGEDLLQDLAMYKTYKEKSVMMAARSLITLYREQLPALLHKK
DRGRQTEAQAERKVRAYGEREVHDTVLGAEALLKDSKTIDIESEDDTDSN
DGEWVNVAHSDGEGGGADDDEEDEDEDEDDDDEDEDEENSNDEENEDEDN
SDEGVESGEESAKAKKEKKDMRILNQKEAAQELALTRIFTDEDFKRINAA
NLKKTVTSARKRPLEQDRAEFVKLNSIEMIYKKRKHDKESRLETVQAGRQ
DRERFGWKDGRVNEHCSKTNREKRKTKNFGMLRHKARSKVKKSFKDKQQA
LRKHLLHQKKMKASFLDH
BO10203.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mys45A-PA | 712 | CG8070-PA | 1..712 | 1..712 | 3658 | 100 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 760..843 | 490..570 | 168 | 35.7 | Plus |
| l(2)01289-PM | 1193 | CG9432-PM | 760..843 | 490..570 | 168 | 35.7 | Plus |
