Clone BO10212 Report

Search the DGRC for BO10212

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptJheh3-RA
Protein status:BO10212.pep: Imported from assembly
Sequenced Size:1438

Clone Sequence Records

BO10212.3prime Sequence

930 bp (808 high quality bases) assembled on 2006-04-19

> BO10212.3prime
ATGGTCTAGAAAGCTTGCTTTTCTCTTCTCGCCGTGTAGGCCAATTTTTC
CCACAAAGGCGGTAAAATCATTGAACAACATGGCCGGCATCTCCAGGGCG
GCAAAGTGGCTGCCCTGCTGGAAGTACATCGAGTGGGTCAGGTTGGGGAA
CTTGTCCCTCAGCTGCCAGTCAGTCACCGAGGCCAGATCGAACCGGAAGC
GGGCACAGCCCATGGGAACCGGGGACTGCACACGATCCAGCTGGAGATCC
CTGTACGTCTTGGACACGTTCTCCAGGTAGAAACGAGCCGCTGTCGTGGC
CGAGTTCGTCAGATAGTAGACCATCAGGTTGTCCAGCACAGCCTCCAGGC
CGAAGACAGTGACTATGGCGCCAAAGTCCTGCTTCAGGCCGGGATTTGTG
CAGGTCTGGAATTTCTCGAGGATATAGGAGGCCAAGCCGACGGGACTGGA
GGTCAGAGCCGCTCCAATCGTATCCGGCTTGGTGGCCTGGATGTGAAAGT
AACCGCTTTCCTCCAGCAGCTCCAGCCATTTTTCCCACACGGGGAAGTGA
TGATCCACAAAGAATCTGGACGGCAAGTACTTCTCCGGGAAGAAGCTGCC
GTAGATTCCCTTCAGAATGGCCAGTGGCGTGTGCAGAACGCACATGTTCG
AGTGGTAACCGATTACGTTCTCTGGATACAAGGTGGCCAAGTTGCTGCCA
ATGATGCTGCCCCAATCTCCGCCTTGGATGAAGAACTTCTTGTGGCCCAG
ACGCAGCATCAGGTTACGCATCACAGTGGCCATTTCAGCGGCATTAAATC
CGGGACGCGTGGCAGCATCGGACCATCCGTAGCCCACCAGGGATGGTGCC
ACGACCTCAAAAGCGTAATCCGTGATGTTTGAGTGCTTGGGTAGCATGGG
TATAAAGTCGAAGAACTCGCGCACCGATCC

BO10212.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG15106-PA 1407 Jheh3-RA 493..1404 930..19 4535 99.8 Minus
CG15101-PA 1425 Jheh1-RA 718..764 720..674 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-RA 1576 CG15106-RA 645..1556 930..19 4545 99.9 Minus
Jheh1-RA 1486 CG15101-RA 699..832 773..640 340 83.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18860395..18861192 19..816 3990 100 Plus
2R 25286936 2R 18861260..18861374 816..930 560 99.1 Plus
2R 25286936 2R 18854088..18854221 640..773 340 83.6 Plus
Blast to na_te.dros performed on 2015-02-10 18:52:07 has no hits.

BO10212.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:04 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-PA 493..1407 15..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:36 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15106-PA 493..1407 15..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:01 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 645..1562 11..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:42 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 645..1562 11..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:42 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18860389..18861192 14..816 99 <- Plus
2R 18861261..18861374 817..930 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:01 Download gff for BO10212.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14747894..14748697 14..816 99 <- Plus
arm_2R 14748766..14748879 817..930 99   Plus

BO10212.5prime Sequence

849 bp (825 high quality bases) assembled on 2006-04-19

> BO10212.5prime
GAAGTTATCAGTCGTCATGAAGTGCCTGATAGTGTTTGGTCTGATTGTGG
CCCTGTTTGGTGCCTTCGTGGGCTATGGCTACGTGGTATTCACGGAACTG
ACCAAGCCCCTGCCCAAGCCGGAGTTCAAGGATGATACGTACTGGGGTCC
CGGCGATGCCAAGGACTTTGTGCCCGACGAAAAGATCTACGAGTTTAAGC
TGCAGGTGCCGCAATCGGAGATCGATGATCTGCGAAAGGAACTCAACCGC
ACGCTGAGACTAACCGAACCGCTGGACGGAATCGCCTTTGAATACGGATT
CAACACCTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACC
TGACCAAGTGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCAAGCAGTAC
AAGACCGAAATTCAGGGCTTGAATATTCACTATATCCACGAAAAGGTATC
CGAGGAGGCTAAGGAAAAGAAACACGTATATCCTCTGCTCCTGCTCCACG
GCTGGCCAGGATCGGTGCGCGAGTTCTTCGACTTTATACCCATGCTAACC
AAGCACTCAAACATCACGGATTACGCTTTTGAGGTCGTGGCACCATCCCT
GGTGGGCTACGGATGGTCCGATGCTGCCACGCGTCCCGGATTTAATGCCG
CTGAAATGGCCACTGTGATGCGTAACCTGATGCTGCGTCTGGGCCACAAG
AAGTTCTTCATCCAAGGCGGAGATTGGGGCAGCATCATTGGCAGCAACTT
GGCCACCTTGTATCCAGAGAACGTAATCGGTTACCACTCGAACATGTGCG
TTCTGCACACGCCACTGGCCATTCTGAAGGGATCTACGGCAGCTTCTTC

BO10212.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15106-PA 1407 Jheh3-RA 1..816 17..832 4080 100 Plus
CG15101-PA 1425 Jheh1-RA 718..764 719..765 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-RA 1576 CG15106-RA 153..986 17..849 4145 99.9 Plus
Jheh1-RA 1486 CG15101-RA 699..832 666..799 340 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18861526..18861926 417..17 2005 100 Minus
2R 25286936 2R 18860965..18861192 849..623 1090 99.6 Minus
2R 25286936 2R 18861260..18861466 623..417 1035 100 Minus
2R 25286936 2R 18854088..18854221 799..666 340 83.6 Minus
Blast to na_te.dros performed on 2015-02-12 07:05:37 has no hits.

BO10212.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:05 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-PA 1..834 17..849 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:37 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15106-PA 1..834 17..849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:41 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 153..986 17..849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:21 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 153..986 17..849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:21 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18860965..18861192 623..849 99 <- Minus
2R 18861261..18861465 418..622 100 <- Minus
2R 18861526..18861926 17..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:41 Download gff for BO10212.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14748470..14748697 623..849 99 <- Minus
arm_2R 14748766..14748970 418..622 100 <- Minus
arm_2R 14749031..14749431 17..417 100   Minus

BO10212.complete Sequence

1438 bp assembled on 2008-08-15

GenBank Submission: FJ631681

> BO10212.complete
GAAGTTATCAGTCGTCATGAAGTGCCTGATAGTGTTTGGTCTGATTGTGG
CCCTGTTTGGTGCCTTCGTGGGCTATGGCTACGTGGTATTCACGGAACTG
ACCAAGCCCCTGCCCAAGCCGGAGTTCAAGGATGATACGTACTGGGGTCC
CGGCGATGCCAAGGACTTTGTGCCCGACGAAAAGATCTACGAGTTTAAGC
TGCAGGTGCCGCAATCGGAGATCGATGATCTGCGAAAGGAACTCAACCGC
ACGCTGAGACTAACCGAACCGCTGGACGGAATCGCCTTTGAATACGGATT
CAACACCTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACC
TGACCAAGTGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCAAGCAGTAC
AAGACCGAAATTCAGGGCTTGAATATTCACTATATCCACGAAAAGGTATC
CGAGGAGGCTAAGGAAAAGAAACACGTATATCCTCTGCTCCTGCTCCACG
GCTGGCCAGGATCGGTGCGCGAGTTCTTCGACTTTATACCCATGCTAACC
AAGCACTCAAACATCACGGATTACGCTTTTGAGGTCGTGGCACCATCCCT
GGTGGGCTACGGATGGTCCGATGCTGCCACGCGTCCCGGATTTAATGCCG
CTGAAATGGCCACTGTGATGCGTAACCTGATGCTGCGTCTGGGCCACAAG
AAGTTCTTCATCCAAGGCGGAGATTGGGGCAGCATCATTGGCAGCAACTT
GGCCACCTTGTATCCAGAGAACGTAATCGGTTACCACTCGAACATGTGCG
TTCTGCACACGCCACTGGCCATTCTGAAGGGAATCTACGGCAGCTTCTTC
CCGGAGAAGTACTTGCCGTCCAGATTCTTTGTGGATCATCACTTCCCCGT
GTGGGAAAAATGGCTGGAGCTGCTGGAGGAAAGCGGTTACTTTCACATCC
AGGCCACCAAGCCGGATACGATTGGAGCGGCTCTGACCTCCAGTCCCGTC
GGCTTGGCCTCCTATATCCTCGAGAAATTCCAGACCTGCACAAATCCCGG
CCTGAAGCAGGACTTTGGCGCCATAGTCACTGTCTTCGGCCTGGAGGCTG
TGCTGGACAACCTGATGGTCTACTATCTGACGAACTCGGCCACGACAGCG
GCTCGTTTCTACCTGGAGAACGTGTCCAAGACGTACAGGGATCTCCAGCT
GGATCGTGTGCAGTCCCCGGTTCCCATGGGCTGTGCCCGCTTCCGGTTCG
ATCTGGCCTCGGTGACTGACTGGCAGCTGAGGGACAAGTTCCCCAACCTG
ACCCACTCGATGTACTTCCAGCAGGGCAGCCACTTTGCCGCCCTGGAGAT
GCCGGCCATGTTGTTCAATGATTTTACCGCCTTTGTGGGAAAAATTGGCC
TACACGGCGAGAAGAGAAAAGCAAGCTTTCTAGACCAT

BO10212.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-RA 1407 CG15106-PA 1..1404 17..1420 7020 100 Plus
Jheh1-RA 1425 CG15101-PA 665..798 666..799 340 83.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-RA 1576 CG15106-RA 153..1556 17..1420 7020 100 Plus
Jheh1-RA 1486 CG15101-RA 699..832 666..799 340 83.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18860395..18861192 1420..623 3990 100 Minus
2R 25286936 2R 18861526..18861926 417..17 2005 100 Minus
2R 25286936 2R 18861260..18861466 623..417 1035 100 Minus
2R 25286936 2R 18854088..18854221 799..666 340 83.6 Minus
Blast to na_te.dros performed on 2014-11-27 13:02:43 has no hits.

BO10212.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:40 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 146..1555 17..1428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:07 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 153..1552 17..1416 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:49 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 146..1545 17..1416 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:50 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
Jheh3-RA 153..1552 17..1416 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:50 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18860399..18861192 623..1416 100 <- Minus
2R 18861261..18861465 418..622 100 <- Minus
2R 18861526..18861926 17..417 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:07 Download gff for BO10212.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14747904..14748697 623..1416 100 <- Minus
arm_2R 14748766..14748970 418..622 100 <- Minus
arm_2R 14749031..14749431 17..417 100   Minus

BO10212.pep Sequence

Translation from 16 to 1438

> BO10212.pep
MKCLIVFGLIVALFGAFVGYGYVVFTELTKPLPKPEFKDDTYWGPGDAKD
FVPDEKIYEFKLQVPQSEIDDLRKELNRTLRLTEPLDGIAFEYGFNTYAL
EQFVDYWRDNYLTKWDERQELFNSFKQYKTEIQGLNIHYIHEKVSEEAKE
KKHVYPLLLLHGWPGSVREFFDFIPMLTKHSNITDYAFEVVAPSLVGYGW
SDAATRPGFNAAEMATVMRNLMLRLGHKKFFIQGGDWGSIIGSNLATLYP
ENVIGYHSNMCVLHTPLAILKGIYGSFFPEKYLPSRFFVDHHFPVWEKWL
ELLEESGYFHIQATKPDTIGAALTSSPVGLASYILEKFQTCTNPGLKQDF
GAIVTVFGLEAVLDNLMVYYLTNSATTAARFYLENVSKTYRDLQLDRVQS
PVPMGCARFRFDLASVTDWQLRDKFPNLTHSMYFQQGSHFAALEMPAMLF
NDFTAFVGKIGLHGEKRKASFLDH

BO10212.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
Jheh3-PA 468 CG15106-PA 1..468 1..468 2508 100 Plus
Jheh1-PA 474 CG15101-PA 10..462 9..457 1221 53 Plus
Jheh2-PD 463 CG15102-PD 8..459 9..459 1121 47.2 Plus
Jheh2-PA 463 CG15102-PA 8..459 9..459 1121 47.2 Plus