Clone Sequence Records
BO10212.3prime Sequence
930 bp (808 high quality bases) assembled on 2006-04-19
> BO10212.3prime
ATGGTCTAGAAAGCTTGCTTTTCTCTTCTCGCCGTGTAGGCCAATTTTTC
CCACAAAGGCGGTAAAATCATTGAACAACATGGCCGGCATCTCCAGGGCG
GCAAAGTGGCTGCCCTGCTGGAAGTACATCGAGTGGGTCAGGTTGGGGAA
CTTGTCCCTCAGCTGCCAGTCAGTCACCGAGGCCAGATCGAACCGGAAGC
GGGCACAGCCCATGGGAACCGGGGACTGCACACGATCCAGCTGGAGATCC
CTGTACGTCTTGGACACGTTCTCCAGGTAGAAACGAGCCGCTGTCGTGGC
CGAGTTCGTCAGATAGTAGACCATCAGGTTGTCCAGCACAGCCTCCAGGC
CGAAGACAGTGACTATGGCGCCAAAGTCCTGCTTCAGGCCGGGATTTGTG
CAGGTCTGGAATTTCTCGAGGATATAGGAGGCCAAGCCGACGGGACTGGA
GGTCAGAGCCGCTCCAATCGTATCCGGCTTGGTGGCCTGGATGTGAAAGT
AACCGCTTTCCTCCAGCAGCTCCAGCCATTTTTCCCACACGGGGAAGTGA
TGATCCACAAAGAATCTGGACGGCAAGTACTTCTCCGGGAAGAAGCTGCC
GTAGATTCCCTTCAGAATGGCCAGTGGCGTGTGCAGAACGCACATGTTCG
AGTGGTAACCGATTACGTTCTCTGGATACAAGGTGGCCAAGTTGCTGCCA
ATGATGCTGCCCCAATCTCCGCCTTGGATGAAGAACTTCTTGTGGCCCAG
ACGCAGCATCAGGTTACGCATCACAGTGGCCATTTCAGCGGCATTAAATC
CGGGACGCGTGGCAGCATCGGACCATCCGTAGCCCACCAGGGATGGTGCC
ACGACCTCAAAAGCGTAATCCGTGATGTTTGAGTGCTTGGGTAGCATGGG
TATAAAGTCGAAGAACTCGCGCACCGATCC
BO10212.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15106-PA | 1407 | Jheh3-RA | 493..1404 | 930..19 | 4535 | 99.8 | Minus |
CG15101-PA | 1425 | Jheh1-RA | 718..764 | 720..674 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:52:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh3-RA | 1576 | CG15106-RA | 645..1556 | 930..19 | 4545 | 99.9 | Minus |
Jheh1-RA | 1486 | CG15101-RA | 699..832 | 773..640 | 340 | 83.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:52:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18860395..18861192 | 19..816 | 3990 | 100 | Plus |
2R | 25286936 | 2R | 18861260..18861374 | 816..930 | 560 | 99.1 | Plus |
2R | 25286936 | 2R | 18854088..18854221 | 640..773 | 340 | 83.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:52:07 has no hits.
BO10212.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:04 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-PA | 493..1407 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:36 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15106-PA | 493..1407 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:01 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 645..1562 | 11..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:09:42 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 645..1562 | 11..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:09:42 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18860389..18861192 | 14..816 | 99 | <- | Plus |
2R | 18861261..18861374 | 817..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:01 Download gff for
BO10212.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14747894..14748697 | 14..816 | 99 | <- | Plus |
arm_2R | 14748766..14748879 | 817..930 | 99 | | Plus |
BO10212.5prime Sequence
849 bp (825 high quality bases) assembled on 2006-04-19
> BO10212.5prime
GAAGTTATCAGTCGTCATGAAGTGCCTGATAGTGTTTGGTCTGATTGTGG
CCCTGTTTGGTGCCTTCGTGGGCTATGGCTACGTGGTATTCACGGAACTG
ACCAAGCCCCTGCCCAAGCCGGAGTTCAAGGATGATACGTACTGGGGTCC
CGGCGATGCCAAGGACTTTGTGCCCGACGAAAAGATCTACGAGTTTAAGC
TGCAGGTGCCGCAATCGGAGATCGATGATCTGCGAAAGGAACTCAACCGC
ACGCTGAGACTAACCGAACCGCTGGACGGAATCGCCTTTGAATACGGATT
CAACACCTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACC
TGACCAAGTGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCAAGCAGTAC
AAGACCGAAATTCAGGGCTTGAATATTCACTATATCCACGAAAAGGTATC
CGAGGAGGCTAAGGAAAAGAAACACGTATATCCTCTGCTCCTGCTCCACG
GCTGGCCAGGATCGGTGCGCGAGTTCTTCGACTTTATACCCATGCTAACC
AAGCACTCAAACATCACGGATTACGCTTTTGAGGTCGTGGCACCATCCCT
GGTGGGCTACGGATGGTCCGATGCTGCCACGCGTCCCGGATTTAATGCCG
CTGAAATGGCCACTGTGATGCGTAACCTGATGCTGCGTCTGGGCCACAAG
AAGTTCTTCATCCAAGGCGGAGATTGGGGCAGCATCATTGGCAGCAACTT
GGCCACCTTGTATCCAGAGAACGTAATCGGTTACCACTCGAACATGTGCG
TTCTGCACACGCCACTGGCCATTCTGAAGGGATCTACGGCAGCTTCTTC
BO10212.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15106-PA | 1407 | Jheh3-RA | 1..816 | 17..832 | 4080 | 100 | Plus |
CG15101-PA | 1425 | Jheh1-RA | 718..764 | 719..765 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh3-RA | 1576 | CG15106-RA | 153..986 | 17..849 | 4145 | 99.9 | Plus |
Jheh1-RA | 1486 | CG15101-RA | 699..832 | 666..799 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 07:05:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18861526..18861926 | 417..17 | 2005 | 100 | Minus |
2R | 25286936 | 2R | 18860965..18861192 | 849..623 | 1090 | 99.6 | Minus |
2R | 25286936 | 2R | 18861260..18861466 | 623..417 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 18854088..18854221 | 799..666 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 07:05:37 has no hits.
BO10212.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:05 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-PA | 1..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:37 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15106-PA | 1..834 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:43:41 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 153..986 | 17..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:21 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 153..986 | 17..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:21 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18860965..18861192 | 623..849 | 99 | <- | Minus |
2R | 18861261..18861465 | 418..622 | 100 | <- | Minus |
2R | 18861526..18861926 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:43:41 Download gff for
BO10212.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14748470..14748697 | 623..849 | 99 | <- | Minus |
arm_2R | 14748766..14748970 | 418..622 | 100 | <- | Minus |
arm_2R | 14749031..14749431 | 17..417 | 100 | | Minus |
BO10212.complete Sequence
1438 bp assembled on 2008-08-15
GenBank Submission: FJ631681
> BO10212.complete
GAAGTTATCAGTCGTCATGAAGTGCCTGATAGTGTTTGGTCTGATTGTGG
CCCTGTTTGGTGCCTTCGTGGGCTATGGCTACGTGGTATTCACGGAACTG
ACCAAGCCCCTGCCCAAGCCGGAGTTCAAGGATGATACGTACTGGGGTCC
CGGCGATGCCAAGGACTTTGTGCCCGACGAAAAGATCTACGAGTTTAAGC
TGCAGGTGCCGCAATCGGAGATCGATGATCTGCGAAAGGAACTCAACCGC
ACGCTGAGACTAACCGAACCGCTGGACGGAATCGCCTTTGAATACGGATT
CAACACCTATGCACTGGAGCAGTTTGTGGACTACTGGCGGGACAATTACC
TGACCAAGTGGGATGAGCGCCAGGAGCTGTTCAACTCGTTCAAGCAGTAC
AAGACCGAAATTCAGGGCTTGAATATTCACTATATCCACGAAAAGGTATC
CGAGGAGGCTAAGGAAAAGAAACACGTATATCCTCTGCTCCTGCTCCACG
GCTGGCCAGGATCGGTGCGCGAGTTCTTCGACTTTATACCCATGCTAACC
AAGCACTCAAACATCACGGATTACGCTTTTGAGGTCGTGGCACCATCCCT
GGTGGGCTACGGATGGTCCGATGCTGCCACGCGTCCCGGATTTAATGCCG
CTGAAATGGCCACTGTGATGCGTAACCTGATGCTGCGTCTGGGCCACAAG
AAGTTCTTCATCCAAGGCGGAGATTGGGGCAGCATCATTGGCAGCAACTT
GGCCACCTTGTATCCAGAGAACGTAATCGGTTACCACTCGAACATGTGCG
TTCTGCACACGCCACTGGCCATTCTGAAGGGAATCTACGGCAGCTTCTTC
CCGGAGAAGTACTTGCCGTCCAGATTCTTTGTGGATCATCACTTCCCCGT
GTGGGAAAAATGGCTGGAGCTGCTGGAGGAAAGCGGTTACTTTCACATCC
AGGCCACCAAGCCGGATACGATTGGAGCGGCTCTGACCTCCAGTCCCGTC
GGCTTGGCCTCCTATATCCTCGAGAAATTCCAGACCTGCACAAATCCCGG
CCTGAAGCAGGACTTTGGCGCCATAGTCACTGTCTTCGGCCTGGAGGCTG
TGCTGGACAACCTGATGGTCTACTATCTGACGAACTCGGCCACGACAGCG
GCTCGTTTCTACCTGGAGAACGTGTCCAAGACGTACAGGGATCTCCAGCT
GGATCGTGTGCAGTCCCCGGTTCCCATGGGCTGTGCCCGCTTCCGGTTCG
ATCTGGCCTCGGTGACTGACTGGCAGCTGAGGGACAAGTTCCCCAACCTG
ACCCACTCGATGTACTTCCAGCAGGGCAGCCACTTTGCCGCCCTGGAGAT
GCCGGCCATGTTGTTCAATGATTTTACCGCCTTTGTGGGAAAAATTGGCC
TACACGGCGAGAAGAGAAAAGCAAGCTTTCTAGACCAT
BO10212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh3-RA | 1407 | CG15106-PA | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Jheh1-RA | 1425 | CG15101-PA | 665..798 | 666..799 | 340 | 83.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh3-RA | 1576 | CG15106-RA | 153..1556 | 17..1420 | 7020 | 100 | Plus |
Jheh1-RA | 1486 | CG15101-RA | 699..832 | 666..799 | 340 | 83.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18860395..18861192 | 1420..623 | 3990 | 100 | Minus |
2R | 25286936 | 2R | 18861526..18861926 | 417..17 | 2005 | 100 | Minus |
2R | 25286936 | 2R | 18861260..18861466 | 623..417 | 1035 | 100 | Minus |
2R | 25286936 | 2R | 18854088..18854221 | 799..666 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:02:43 has no hits.
BO10212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:40 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 146..1555 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:48:07 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 153..1552 | 17..1416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:06:49 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 146..1545 | 17..1416 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:50 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Jheh3-RA | 153..1552 | 17..1416 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:50 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18860399..18861192 | 623..1416 | 100 | <- | Minus |
2R | 18861261..18861465 | 418..622 | 100 | <- | Minus |
2R | 18861526..18861926 | 17..417 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:48:07 Download gff for
BO10212.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14747904..14748697 | 623..1416 | 100 | <- | Minus |
arm_2R | 14748766..14748970 | 418..622 | 100 | <- | Minus |
arm_2R | 14749031..14749431 | 17..417 | 100 | | Minus |
BO10212.pep Sequence
Translation from 16 to 1438
> BO10212.pep
MKCLIVFGLIVALFGAFVGYGYVVFTELTKPLPKPEFKDDTYWGPGDAKD
FVPDEKIYEFKLQVPQSEIDDLRKELNRTLRLTEPLDGIAFEYGFNTYAL
EQFVDYWRDNYLTKWDERQELFNSFKQYKTEIQGLNIHYIHEKVSEEAKE
KKHVYPLLLLHGWPGSVREFFDFIPMLTKHSNITDYAFEVVAPSLVGYGW
SDAATRPGFNAAEMATVMRNLMLRLGHKKFFIQGGDWGSIIGSNLATLYP
ENVIGYHSNMCVLHTPLAILKGIYGSFFPEKYLPSRFFVDHHFPVWEKWL
ELLEESGYFHIQATKPDTIGAALTSSPVGLASYILEKFQTCTNPGLKQDF
GAIVTVFGLEAVLDNLMVYYLTNSATTAARFYLENVSKTYRDLQLDRVQS
PVPMGCARFRFDLASVTDWQLRDKFPNLTHSMYFQQGSHFAALEMPAMLF
NDFTAFVGKIGLHGEKRKASFLDH
BO10212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:40:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Jheh3-PA | 468 | CG15106-PA | 1..468 | 1..468 | 2508 | 100 | Plus |
Jheh1-PA | 474 | CG15101-PA | 10..462 | 9..457 | 1221 | 53 | Plus |
Jheh2-PD | 463 | CG15102-PD | 8..459 | 9..459 | 1121 | 47.2 | Plus |
Jheh2-PA | 463 | CG15102-PA | 8..459 | 9..459 | 1121 | 47.2 | Plus |