Clone BO10213 Report

Search the DGRC for BO10213

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:13
Vector:pDNR-Dual
Associated Gene/Transcriptcdm-RA
Protein status:BO10213.pep: validated full length
Sequenced Size:2947

Clone Sequence Records

BO10213.3prime Sequence

935 bp (801 high quality bases) assembled on 2006-04-19

> BO10213.3prime
ATGGTCTAGAAAGCTTGCCTGGAACTTTTCTGTAAGTCCTCGGGTCTTCA
TTGCCATTTCCGACAAATGTTGTTGCAATAACCTCTTGTTGACCTTTTCC
TTGATTATTAGAGCAGTGTAGCGCGTTTTATCCGCGTCGGTTATGAGCTG
TGTGGGGAAATTGGGAGTGGACATTAGGGACTTCATCCAGACGGCCATCT
CGGCGGCATATTTTCTGTTCATGGCAAGAAGGATGTCTGCAAACTTATCC
ACCTGCGACCGCGGCGTTAGGTAGCCCACGCACATCATCGCCGTGTACAG
CGTCTGCTCGCCGGTGGCCAGGACAACTTCTGTGACATGAGCATGGTTAC
GCGACTGCATCACAAAGTGGGTAAGAAACTGTATGCTATTTCGGATGGCA
CCACTCTCCGGCAAAGTCATTCCACGCTGGGCGTAAAAGACCAGACGATC
GTAGGCCAGTGTCTTGTCCTCCAAAACTTGAGGGATTTTCTTAATGATCT
GCGTCAGACAGCCGAAGAAGGTTTCCATGGTGTCCGAAATGTTGGAGAAG
TTCTGCTCGGGAGTGCTCTCAAATAGCTTAAAGCTGTGTTGGATGAACTC
CCTCAGAAGTTGCTGCATCAGCGGCTTGCAGCCTTCGTCCTTAAAGAACA
TAACAATGGCCGTTTTGGATATTTCTAGAGTAGGAGCGCAGCATCGGGTC
TGAAAGCTGGCAACAATGAAGAGACAAAGATCCTGCAGCATTGGCTGGAA
GCTGCTCCTTAAATTCGTTATCGCATGCTTCATCGCACTGCAAGCGGCCT
CTAGGACATCGATCTCCTCCACCCACATCTCGGCGATTCTCTTGAAGATG
GGCATCGTGCGCTGCATGACGAGCAGAACTGGCTGCACAATCGGGTGGTC
CGTCGCCTGCTCGTCCACATCCGTGTTAAGCGAAG

BO10213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7212-PA 2916 cdm-RA 1999..2913 933..19 4525 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 2132..3046 933..19 4545 99.8 Minus
cdm-RA 3253 CG7212-RA 2132..3046 933..19 4545 99.8 Minus
PP2A-B'-RK 3572 CG7913-RK 3443..3524 19..100 410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:45:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18180065..18180626 100..661 2810 100 Plus
3R 32079331 3R 18180684..18180824 660..800 705 100 Plus
3R 32079331 3R 18180882..18181017 798..933 650 98.5 Plus
3R 32079331 3R 18179920..18180001 19..100 410 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:45:22 has no hits.

BO10213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:06 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-PA 1997..2916 16..935 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:39 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7212-PA 1997..2916 16..935 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:53:53 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 2130..3050 15..935 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:18:55 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 2130..3050 15..935 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:18:55 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18179915..18180001 15..100 97 <- Plus
3R 18180066..18180625 101..660 100 <- Plus
3R 18180685..18180822 661..798 100 <- Plus
3R 18180883..18181018 799..935 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:53:53 Download gff for BO10213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14005637..14005723 15..100 97 <- Plus
arm_3R 14005788..14006347 101..660 100 <- Plus
arm_3R 14006407..14006544 661..798 100 <- Plus
arm_3R 14006605..14006740 799..935 97   Plus

BO10213.5prime Sequence

810 bp (809 high quality bases) assembled on 2006-04-19

> BO10213.5prime
GAAGTTATCAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGG
CGGTCGTGTCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCAT
GAATGGCTTACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTG
GCAGCTAATGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCA
TCACGCTGCACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAG
AATCGCGAGGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGC
TGGCGGACCGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTT
ACATCGTTCACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATC
AACACGTTTCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATT
GTGGATCATGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCA
TACATACGTCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGA
GTGCAGTTGGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAA
CCGCGTGTGGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGT
GCGTCGGCACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTC
ACCATCACCGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTG
CATACACGCCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCG
AGTCCTGTCT

BO10213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7212-PA 2916 cdm-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:37
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 132..927 15..810 3980 100 Plus
cdm-RA 3253 CG7212-RA 132..927 15..810 3980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18182596..18183094 669..171 2495 100 Minus
3R 32079331 3R 18183191..18183348 172..15 790 100 Minus
3R 32079331 3R 18182393..18182533 810..670 705 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:20:34 has no hits.

BO10213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:07 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:40 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7212-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:39 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..927 9..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:44 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..927 9..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:44 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18182393..18182533 670..810 100 <- Minus
3R 18182596..18183092 173..669 100 <- Minus
3R 18183191..18183354 9..172 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:39 Download gff for BO10213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14008913..14009076 9..172 98   Minus
arm_3R 14008115..14008255 670..810 100 <- Minus
arm_3R 14008318..14008814 173..669 100 <- Minus

BO10213.complete Sequence

2947 bp (2947 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631682

> BO10213.complete
GAAGTTATCAGTCGACATGGAGCCCATTGACATTGCGCGTCTGGAGGAGG
CGGTCGTGTCGTTCTACCGCTCGAACTCGCAGAACCAGGCGATCACCCAT
GAATGGCTTACCGATGCGGAGGCCAGTCCACAGGCCTGGCAGTTTTCCTG
GCAGCTAATGCAGCTCGGCAAGAGTCAGGAGGTGCAGTTCTTCGGCGCCA
TCACGCTGCACTCCAAGCTTATGAAGCACTGGCACGAAGTGCCGCCAGAG
AATCGCGAGGAGTTAAAGCAAAAGATACTCGAATCCATCGTTCGCTTCGC
TGGCGGACCGAAGATCGTCCTCAATCGGTTGTGCATCTCGCTGGGCGCTT
ACATCGTTCACATGCTGGGCGAATGGCCCGGCGCCATCGAGGAGGTGATC
AACACGTTTCAGAATCAACGGATGCCAAATGTCAGCGCCGATGTGCAATT
GTGGATCATGCTGGAGGTGCTGACCGCCATTCCCGAGGAAGCGCAGGTCA
TACATACGTCTGTCAAGCGGGTTGTTCTGCGCGCCGAGATCGCCAAGCGA
GTGCAGTTGGTCATTCACACCGTTGAGCGATATCTGAAGCTGCAAATGAA
CCGCGTGTGGGATGCCGAGGCGTACAGTAACATGAACAGGGCCGTTAAGT
GCGTCGGCACCTGGATCAAAAACATCGGCTACACCATTGAGGGCTGCGTC
ACCATCACCGCCGTGCTCCTGGAAGTGGTGCACAAGTGCTATTGGCCCTG
CATACACGCCGGCGACGGCTGCATGACCGCCGATGAGAACGAACTGGCCG
AGTCCTGTCTGAAGACCATGGTGAACATTATCATCCAGCCAGACTGCCAC
AACTATCCAAAGACGGCATTTGTGCTTATAAAAATGTTCCTGGACTCGCT
ATCCGAAATCACAAAGACGGAATGGAAGAGGGAGAACGACAACGAGGACA
TTATCGTACATATCTACATGCTGTTCGTCTCTTCGGTGGAGCGACATTCG
ACGCTGTTGCTCAGCGGCATCACGTCCGCGGATCCGGAATTGTCTATCCT
AGTGCATCGCATCGTGCAGGAGATTCTCCACTGCACGGACAAGCCGGGCA
TTTACCCGGTGGAGGAGTCCTGCAGCACAATGGCCTTGGCGTTTTGGTAT
ATGCTGCAAGACGAAGTGTTCGCCATGTCTAACGATGAGCAGAAACACAA
GTGCTGGGAGTACATCAAACCATTGTACGCCCATCTAACCAGGATTTTAG
TAAGAAAGTCAGAGCAGCCAGACGAAAAGTCGCTCGCCAAGTGGAGCTCC
GATGATTTGGAATGCTTTAGGTGCTACAGACAGGATATATCCGATACCTT
TATGTATTGCTATGATGTGTTGAATGACTATATCTTGGAGATTCTGGCTG
CCATGTTGGACGAGGCCATTGCCGATCTGCAAAGACATCCCACACACTGG
ACAAAGCTGGAGGCGTGCATCTATTCCTTTCAGTCGGTGGCCGAGCACTT
TGGTGGCGAGGAGAAGCGGCAAATACCACGGCTGATGCGCGTGCTGGCCG
AGATTCCCTACGAGAAGCTCAATGTCAAGCTACTGGGCACTGCGCTAGAG
ACAATGGGCTCCTATTGCAATTGGCTGATGGAGAATCCGGCGTACATTCC
GCCAGCCATTAACCTACTGGTGCGCGGCCTCAACTCCTCAATGTCAGCAC
AGGCGACGCTCGGCCTGAAGGAGCTGTGTCGCGATTGTCAGCTGCAGCTG
AAGCCGTATGCGGATCCGCTCCTAAACGCATGCCACGCTTCCCTAAACAC
GGGCCGCATGAAGAACTCCGATTCGGTGAGGCTTATGTTCAGCATCGGTA
AGCTAATGAGCCTGCTGCGGCCAGAGGAAATACCCAAATACTTGGATATT
ATCGTCAGTCCCTGCTTCGAGGAGCTACAGGCCATTTGCCAGGCAGATTC
GAAAACTCCCGCTGCTCGAATTCGCACAATCTTCCGGCTCAATATGATCT
CCACTCTCTTCTCCTCGCTAAACACGGATGTGGACGAGCAGGCGACGGAC
CAACCGATTGTGCAGCCAGTTCTGCTCGTCATGCAGCGCACGATGCCCAT
CTTCAAGAGAATCGCCGAGATGTGGGTGGAGGAGATCGATGTCCTAGAGG
CCGCTTGCAGTGCGATGAAGCATGCGATAACGAATTTAAGGAGCAGCTTC
CAGCCAATGCTGCAGGATCTTTGTCTCTTCATTGTTGCCAGCTTTCAGAC
CCGATGCTGCGCTCCTACTCTAGAAATATCCAAAACGGCCATTGTTATGT
TCTTTAAGGACGAAGGCTGCAAGCCGCTGATGCAGCAACTTCTGAGGGAG
TTCATCCAACACAGCTTTAAGCTATTTGAGAGCACTCCCGAGCAGAACTT
CTCCAACATTTCGGACACCATGGAAACCTTCTTCGGCTGTCTGACGCAGA
TCATTAAGAAAATCCCTCAAGTTTTGGAGGACAAGACACTGGCCTACGAT
CGTCTGGTCTTTTACGCCCAGCGTGGAATGACTTTGCCGGAGAGTGGTGC
CATCCGAAATAGCATACAGTTTCTTACCCACTTTGTGATGCAGTCGCGTA
ACCATGCTCATGTCACAGAAGTTGTCCTGGCCACCGGCGAGCAGACGCTG
TACACGGCGATGATGTGCGTGGGCTACCTAACGCCGCGGTCGCAGGTGGA
TAAGTTTGCAGACATCCTTCTTGCCATGAACAGAAAATATGCCGCCGAGA
TGGCCGTCTGGATGAAGTCCCTAATGTCCACTCCCAATTTCCCCACACAG
CTCATAACCGACGCGGATAAAACGCGCTACACTGCTCTAATAATCAAGGA
AAAGGTCAACAAGAGGTTATTGCAACAACATTTGTCGGAAATGGCAATGA
AGACCCGAGGACTTACAGAAAAGTTCCAGGCAAGCTTTCTAGACCAT

BO10213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 2916 CG7212-PB 1..2913 17..2929 14565 100 Plus
cdm-RA 2916 CG7212-PA 1..2913 17..2929 14565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-RB 3691 CG7212-RB 132..3046 15..2929 14575 100 Plus
cdm-RA 3253 CG7212-RA 132..3046 15..2929 14575 100 Plus
PP2A-B'-RK 3572 CG7913-RK 3443..3524 2929..2848 410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18181852..18182533 1351..670 3410 100 Minus
3R 32079331 3R 18181147..18181746 1951..1352 3000 100 Minus
3R 32079331 3R 18180065..18180626 2848..2287 2810 100 Minus
3R 32079331 3R 18182596..18183094 669..171 2495 100 Minus
3R 32079331 3R 18180882..18181081 2150..1951 1000 100 Minus
3R 32079331 3R 18183191..18183348 172..15 790 100 Minus
3R 32079331 3R 18180684..18180824 2288..2148 705 100 Minus
3R 32079331 3R 18179920..18180001 2929..2848 410 100 Minus
Blast to na_te.dros performed on 2014-11-27 11:00:06 has no hits.

BO10213.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:22 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 1..2916 17..2932 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:57 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..3050 9..2933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:57:47 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 134..3046 17..2931 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:22 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 126..3050 9..2933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:16 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
cdm-RA 134..3046 17..2931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:16 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18179917..18180001 2848..2931 97 <- Minus
3R 18180883..18181080 1952..2149 100 <- Minus
3R 18180066..18180625 2288..2847 100 <- Minus
3R 18180685..18180822 2150..2287 100 <- Minus
3R 18181147..18181746 1352..1951 100 <- Minus
3R 18181852..18182533 670..1351 100 <- Minus
3R 18182596..18183092 173..669 100 <- Minus
3R 18183191..18183346 17..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:57:47 Download gff for BO10213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14008913..14009068 17..172 100   Minus
arm_3R 14005639..14005723 2848..2931 97 <- Minus
arm_3R 14005788..14006347 2288..2847 100 <- Minus
arm_3R 14006407..14006544 2150..2287 100 <- Minus
arm_3R 14006605..14006802 1952..2149 100 <- Minus
arm_3R 14006869..14007468 1352..1951 100 <- Minus
arm_3R 14007574..14008255 670..1351 100 <- Minus
arm_3R 14008318..14008814 173..669 100 <- Minus

BO10213.pep Sequence

Translation from 16 to 2947

> BO10213.pep
MEPIDIARLEEAVVSFYRSNSQNQAITHEWLTDAEASPQAWQFSWQLMQL
GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKI
VLNRLCISLGAYIVHMLGEWPGAIEEVINTFQNQRMPNVSADVQLWIMLE
VLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDA
EAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGD
GCMTADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITK
TEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIV
QEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYI
KPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYD
VLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK
RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINL
LVRGLNSSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKN
SDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAA
RIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIA
EMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCAP
TLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISD
TMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPESGAIRNSI
QFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADI
LLAMNRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKR
LLQQHLSEMAMKTRGLTEKFQASFLDH

BO10213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
cdm-PB 971 CG7212-PB 1..971 1..971 5059 100 Plus
cdm-PA 971 CG7212-PA 1..971 1..971 5059 100 Plus
Trn-SR-PB 932 CG2848-PB 17..825 16..868 361 19.5 Plus
Trn-SR-PA 932 CG2848-PA 17..825 16..868 361 19.5 Plus