Clone Sequence Records
BO10215.3prime Sequence
890 bp (881 high quality bases) assembled on 2006-04-19
> BO10215.3prime
ATGGTCTAGAAAGCTTGCGCGGGCCCTGAAGAGTACCGAGTGAAGTGCAT
CGATGTCCACCTCCACGCCAGACGAGTTTGTGGTCACGGTGCGAGAGCTG
GCCTTGTGCACCGAGCGACGGGAGGAGTGCGGATTGACCAGCACACAGTG
CATGGGCTGGTCATCGAACTGACGATGGTGATAGGTATCTACGGCCTTCT
CGGCATGTTCCAGTGACTTGTAAATAACTTCGGCGGTGCCGGGACGCACC
ACACGAGCGTCGTACACTGGGCCGATGTCGCTAAAAAGCTCGCGAATATC
CGCAGTAGTCACGTTAGTATGCAGATTGCTCACCAGCAGGCGGTATCCAT
CCTTTGTGTTCGACGTACGCAGCGACAATGGGGATGGCGAACGGCGCTTG
TTCTTCGATGGAGCAGCTGCATCACCATCACTATCAGTACCGCTATCGCT
ATCACTACCACCACCGCCACCAACAGCCTTTCTCCGGTTCTCGTTGGCGT
AGATGCCATGAGAAATGTGAGGATCTCTCTTACCGACAAACAGACGAGAC
CGCAGCGATTCTGGGAGTTTACTTGTGCTTACTGTGTCGCGGTGGCGGCG
CTCGAGAGGCTCCTTGGTGCTATTTGAGCGTCCAACTACGAGTCGGTTGG
TCAGCGAAGGACGCTCAATGCGATTGCGGGCCGCCTCGTAAATGGAGAAT
GCATTGTTATCTATTTTGTTATTTAGTGGGGCCATGGACATCTCCACGTC
GTCGCCGCGGTTCAGGTCGAGCCCACCAATTGAGTAGCGTGGCGACGCTT
GCTTCATTTGCCCTAAGTGCAGTGTGCGAGATATTTCCTCATCCTCGAGG
TCCTGCATATTATCAAGATCAATATAGCGTCGTGGAGCAA
BO10215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 1425 | CG6961-RA | 551..1422 | 890..19 | 4360 | 100 | Minus |
CG18259-PA | 1425 | CG18259-RA | 551..1417 | 890..24 | 4160 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 701..1572 | 890..19 | 4360 | 100 | Minus |
CG18259-RA | 2055 | CG18259-RA | 670..1541 | 890..19 | 4240 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18786599..18787341 | 98..840 | 3715 | 100 | Plus |
X | 23542271 | X | 18781914..18782656 | 98..840 | 3610 | 99.1 | Plus |
X | 23542271 | X | 18786464..18786544 | 19..99 | 405 | 100 | Plus |
X | 23542271 | X | 18781779..18781859 | 19..99 | 390 | 98.8 | Plus |
X | 23542271 | X | 18782713..18782763 | 840..890 | 255 | 100 | Plus |
X | 23542271 | X | 18787398..18787448 | 840..890 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:20:19 has no hits.
BO10215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:10 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 553..1425 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:45 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 553..1425 | 18..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:18 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 703..1572 | 19..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:51 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 703..1572 | 19..888 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:51 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18786464..18786542 | 19..97 | 100 | <- | Plus |
X | 18786599..18787340 | 98..839 | 100 | <- | Plus |
X | 18787398..18787446 | 840..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:18 Download gff for
BO10215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18680497..18680575 | 19..97 | 100 | <- | Plus |
arm_X | 18680632..18681373 | 98..839 | 100 | <- | Plus |
arm_X | 18681431..18681479 | 840..888 | 100 | | Plus |
BO10215.5prime Sequence
829 bp (804 high quality bases) assembled on 2006-04-19
> BO10215.5prime
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCCACCGACTCGTAGTTGGACGC
BO10215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 1425 | CG6961-RA | 1..813 | 17..829 | 4040 | 99.8 | Plus |
CG18259-PA | 1425 | CG18259-RA | 1..813 | 17..829 | 3915 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 150..963 | 16..829 | 4055 | 99.9 | Plus |
CG18259-RA | 2055 | CG18259-RA | 119..932 | 16..829 | 3980 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18787398..18787918 | 617..97 | 2605 | 100 | Minus |
X | 23542271 | X | 18782713..18783233 | 617..97 | 2530 | 99 | Minus |
X | 23542271 | X | 18782444..18782656 | 829..617 | 1050 | 99.5 | Minus |
X | 23542271 | X | 18787129..18787341 | 829..617 | 1050 | 99.5 | Minus |
X | 23542271 | X | 18783296..18783376 | 96..16 | 405 | 100 | Minus |
X | 23542271 | X | 18787981..18788061 | 96..16 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:08:29 has no hits.
BO10215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:11 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:46 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-PA | 1..813 | 17..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:20 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 147..963 | 10..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:29 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 147..963 | 10..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:29 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18787129..18787340 | 618..829 | 99 | <- | Minus |
X | 18787398..18787918 | 97..617 | 100 | <- | Minus |
X | 18787981..18788064 | 10..96 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:20 Download gff for
BO10215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18681162..18681373 | 618..829 | 99 | <- | Minus |
arm_X | 18681431..18681951 | 97..617 | 100 | <- | Minus |
arm_X | 18682014..18682097 | 10..96 | 96 | | Minus |
BO10215.complete Sequence
1456 bp (1456 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631683
> BO10215.complete
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGTTTGTCGGTAAGAGAGATCCTCACATTTCTCATG
GCATCTACGCCAACGAGAACCGGAGAAAGGCTGTTGGTGGCGGTGGTGGT
AGTGATAGCGATAGCGGTACTGATAGTGATGGTGATGCAGCTGCTCCATC
GAAGAACAAGCGCCGTTCGCCATCCCCATTGTCGCTGCGTACGTCGAACA
CAAAGGATGGATACCGCCTGCTGGTGAGCAATCTGCATACTAACGTGACT
ACTGCGGATATTCGCGAGCTTTTTAGCGACATCGGCCCAGTGTACGACGC
TCGTGTGGTGCGTCCCGGCACCGCCGAAGTTATTTACAAGTCACTGGAAC
ATGCCGAGAAGGCCGTAGATACCTATCACCATCGTCAGTTCGATGACCAG
CCCATGCACTGTGTGCTGGTCAATCCGCACTCCTCCCGTCGCTCGGTGCA
CAAGGCCAGCTCTCGCACCGTGACCACAAACTCGTCTGGCGTGGAGGTGG
ACATCGATGCACTTCACTCGGTACTCTTCAGGGCCCGCGCAAGCTTTCTA
GACCAT
BO10215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1425 | CG6961-PA | 1..1422 | 17..1438 | 7110 | 100 | Plus |
CG18259-RA | 1425 | CG18259-PA | 1..1422 | 17..1438 | 6915 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-RA | 1894 | CG6961-RA | 150..1572 | 16..1438 | 7115 | 100 | Plus |
CG18259-RA | 2055 | CG18259-RA | 119..1541 | 16..1438 | 6920 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18786599..18787341 | 1359..617 | 3715 | 100 | Minus |
X | 23542271 | X | 18781914..18782656 | 1359..617 | 3610 | 99.1 | Minus |
X | 23542271 | X | 18787398..18787918 | 617..97 | 2605 | 100 | Minus |
X | 23542271 | X | 18782713..18783233 | 617..97 | 2530 | 99 | Minus |
X | 23542271 | X | 18783296..18783376 | 96..16 | 405 | 100 | Minus |
X | 23542271 | X | 18786464..18786544 | 1438..1358 | 405 | 100 | Minus |
X | 23542271 | X | 18787981..18788061 | 96..16 | 405 | 100 | Minus |
X | 23542271 | X | 18781779..18781859 | 1438..1358 | 390 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:21:41 has no hits.
BO10215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:19 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 1..1425 | 17..1439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:05 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 142..1567 | 10..1438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:58 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 151..1572 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:19 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 142..1567 | 10..1438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:51 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6961-RA | 151..1572 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:51 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18786462..18786542 | 1360..1440 | 97 | <- | Minus |
X | 18786599..18787340 | 618..1359 | 100 | <- | Minus |
X | 18787398..18787918 | 97..617 | 100 | <- | Minus |
X | 18787981..18788060 | 17..96 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:58 Download gff for
BO10215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18680495..18680575 | 1360..1440 | 97 | <- | Minus |
arm_X | 18680632..18681373 | 618..1359 | 100 | <- | Minus |
arm_X | 18681431..18681951 | 97..617 | 100 | <- | Minus |
arm_X | 18682014..18682093 | 17..96 | 100 | | Minus |
BO10215.pep Sequence
Translation from 16 to 1456
> BO10215.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRARASFLDH
BO10215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6961-PA | 474 | CG6961-PA | 1..474 | 1..474 | 2449 | 100 | Plus |
CG18259-PA | 474 | CG18259-PA | 1..474 | 1..474 | 2421 | 98.7 | Plus |