Clone BO10215 Report

Search the DGRC for BO10215

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG6961-RA
Protein status:BO10215.pep: validated full length
Sequenced Size:1456

Clone Sequence Records

BO10215.3prime Sequence

890 bp (881 high quality bases) assembled on 2006-04-19

> BO10215.3prime
ATGGTCTAGAAAGCTTGCGCGGGCCCTGAAGAGTACCGAGTGAAGTGCAT
CGATGTCCACCTCCACGCCAGACGAGTTTGTGGTCACGGTGCGAGAGCTG
GCCTTGTGCACCGAGCGACGGGAGGAGTGCGGATTGACCAGCACACAGTG
CATGGGCTGGTCATCGAACTGACGATGGTGATAGGTATCTACGGCCTTCT
CGGCATGTTCCAGTGACTTGTAAATAACTTCGGCGGTGCCGGGACGCACC
ACACGAGCGTCGTACACTGGGCCGATGTCGCTAAAAAGCTCGCGAATATC
CGCAGTAGTCACGTTAGTATGCAGATTGCTCACCAGCAGGCGGTATCCAT
CCTTTGTGTTCGACGTACGCAGCGACAATGGGGATGGCGAACGGCGCTTG
TTCTTCGATGGAGCAGCTGCATCACCATCACTATCAGTACCGCTATCGCT
ATCACTACCACCACCGCCACCAACAGCCTTTCTCCGGTTCTCGTTGGCGT
AGATGCCATGAGAAATGTGAGGATCTCTCTTACCGACAAACAGACGAGAC
CGCAGCGATTCTGGGAGTTTACTTGTGCTTACTGTGTCGCGGTGGCGGCG
CTCGAGAGGCTCCTTGGTGCTATTTGAGCGTCCAACTACGAGTCGGTTGG
TCAGCGAAGGACGCTCAATGCGATTGCGGGCCGCCTCGTAAATGGAGAAT
GCATTGTTATCTATTTTGTTATTTAGTGGGGCCATGGACATCTCCACGTC
GTCGCCGCGGTTCAGGTCGAGCCCACCAATTGAGTAGCGTGGCGACGCTT
GCTTCATTTGCCCTAAGTGCAGTGTGCGAGATATTTCCTCATCCTCGAGG
TCCTGCATATTATCAAGATCAATATAGCGTCGTGGAGCAA

BO10215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 1425 CG6961-RA 551..1422 890..19 4360 100 Minus
CG18259-PA 1425 CG18259-RA 551..1417 890..24 4160 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 701..1572 890..19 4360 100 Minus
CG18259-RA 2055 CG18259-RA 670..1541 890..19 4240 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18786599..18787341 98..840 3715 100 Plus
X 23542271 X 18781914..18782656 98..840 3610 99.1 Plus
X 23542271 X 18786464..18786544 19..99 405 100 Plus
X 23542271 X 18781779..18781859 19..99 390 98.8 Plus
X 23542271 X 18782713..18782763 840..890 255 100 Plus
X 23542271 X 18787398..18787448 840..890 255 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:20:19 has no hits.

BO10215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:10 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 553..1425 18..888 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:45 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 553..1425 18..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:18 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 703..1572 19..888 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:51 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 703..1572 19..888 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:51 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18786464..18786542 19..97 100 <- Plus
X 18786599..18787340 98..839 100 <- Plus
X 18787398..18787446 840..888 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:18 Download gff for BO10215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18680497..18680575 19..97 100 <- Plus
arm_X 18680632..18681373 98..839 100 <- Plus
arm_X 18681431..18681479 840..888 100   Plus

BO10215.5prime Sequence

829 bp (804 high quality bases) assembled on 2006-04-19

> BO10215.5prime
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCCACCGACTCGTAGTTGGACGC

BO10215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 1425 CG6961-RA 1..813 17..829 4040 99.8 Plus
CG18259-PA 1425 CG18259-RA 1..813 17..829 3915 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 150..963 16..829 4055 99.9 Plus
CG18259-RA 2055 CG18259-RA 119..932 16..829 3980 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18787398..18787918 617..97 2605 100 Minus
X 23542271 X 18782713..18783233 617..97 2530 99 Minus
X 23542271 X 18782444..18782656 829..617 1050 99.5 Minus
X 23542271 X 18787129..18787341 829..617 1050 99.5 Minus
X 23542271 X 18783296..18783376 96..16 405 100 Minus
X 23542271 X 18787981..18788061 96..16 405 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:08:29 has no hits.

BO10215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:11 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:46 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-PA 1..813 17..829 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:20 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 147..963 10..829 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:29 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 147..963 10..829 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:29 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18787129..18787340 618..829 99 <- Minus
X 18787398..18787918 97..617 100 <- Minus
X 18787981..18788064 10..96 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:20 Download gff for BO10215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18681162..18681373 618..829 99 <- Minus
arm_X 18681431..18681951 97..617 100 <- Minus
arm_X 18682014..18682097 10..96 96   Minus

BO10215.complete Sequence

1456 bp (1456 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631683

> BO10215.complete
GAAGTTATCAGTCGACATGGACATCGATTTGAGTCTGGACGAGATTATAG
AGCGGAAGCGCGGGCAACGCGGCTATCGTCCCCTCGACAGAAAGTTCAAT
GCGAACTTCTCCAAGCCGCGCCAGCTGCTGAACAAGCCTTTTTTCAAGCC
ATCGGGTGCACGAGGATCTCACTCTGATATGCCGGCAAAGCGCACCTTCG
ATGCCAGAAACACGATTGCCGCGAAGACACGGGCCAAGATAGCCGATGCT
CGGGATCTGATCAACAAGAGCGTGCGCGACTCGGGCATCGATGCCCGCCA
ACTGTTGCTGGAGCGAAAGAAGGCCCGTTCGGCGGGCCCAATACTTATTG
ATGACGAAGAAGAGTCGTTTGAGCCATCACATCGCGCACGCGGAAAGGGA
GTGCACATCGGTCAGTTTGGTCACCGCCTTAGCATGTCAAACCATGCGGA
CGGCACCATTCAGGCGAAATGGGACTCGGACGACGGGGTCGTTGAACTGG
GTAACCACATGTTGTCCGGCTTGCGTCGAACCTTTGACCCCAGATCCCAT
AAGCCGGGCAAACCCTTTGCTCCACGACGCTATATTGATCTTGATAATAT
GCAGGACCTCGAGGATGAGGAAATATCTCGCACACTGCACTTAGGGCAAA
TGAAGCAAGCGTCGCCACGCTACTCAATTGGTGGGCTCGACCTGAACCGC
GGCGACGACGTGGAGATGTCCATGGCCCCACTAAATAACAAAATAGATAA
CAATGCATTCTCCATTTACGAGGCGGCCCGCAATCGCATTGAGCGTCCTT
CGCTGACCAACCGACTCGTAGTTGGACGCTCAAATAGCACCAAGGAGCCT
CTCGAGCGCCGCCACCGCGACACAGTAAGCACAAGTAAACTCCCAGAATC
GCTGCGGTCTCGTCTGTTTGTCGGTAAGAGAGATCCTCACATTTCTCATG
GCATCTACGCCAACGAGAACCGGAGAAAGGCTGTTGGTGGCGGTGGTGGT
AGTGATAGCGATAGCGGTACTGATAGTGATGGTGATGCAGCTGCTCCATC
GAAGAACAAGCGCCGTTCGCCATCCCCATTGTCGCTGCGTACGTCGAACA
CAAAGGATGGATACCGCCTGCTGGTGAGCAATCTGCATACTAACGTGACT
ACTGCGGATATTCGCGAGCTTTTTAGCGACATCGGCCCAGTGTACGACGC
TCGTGTGGTGCGTCCCGGCACCGCCGAAGTTATTTACAAGTCACTGGAAC
ATGCCGAGAAGGCCGTAGATACCTATCACCATCGTCAGTTCGATGACCAG
CCCATGCACTGTGTGCTGGTCAATCCGCACTCCTCCCGTCGCTCGGTGCA
CAAGGCCAGCTCTCGCACCGTGACCACAAACTCGTCTGGCGTGGAGGTGG
ACATCGATGCACTTCACTCGGTACTCTTCAGGGCCCGCGCAAGCTTTCTA
GACCAT

BO10215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1425 CG6961-PA 1..1422 17..1438 7110 100 Plus
CG18259-RA 1425 CG18259-PA 1..1422 17..1438 6915 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-RA 1894 CG6961-RA 150..1572 16..1438 7115 100 Plus
CG18259-RA 2055 CG18259-RA 119..1541 16..1438 6920 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18786599..18787341 1359..617 3715 100 Minus
X 23542271 X 18781914..18782656 1359..617 3610 99.1 Minus
X 23542271 X 18787398..18787918 617..97 2605 100 Minus
X 23542271 X 18782713..18783233 617..97 2530 99 Minus
X 23542271 X 18783296..18783376 96..16 405 100 Minus
X 23542271 X 18786464..18786544 1438..1358 405 100 Minus
X 23542271 X 18787981..18788061 96..16 405 100 Minus
X 23542271 X 18781779..18781859 1438..1358 390 98.8 Minus
Blast to na_te.dros performed on 2014-11-27 01:21:41 has no hits.

BO10215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:19 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 1..1425 17..1439 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:05 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 142..1567 10..1438 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:51:58 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 151..1572 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:19 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 142..1567 10..1438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:51 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
CG6961-RA 151..1572 17..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:51 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
X 18786462..18786542 1360..1440 97 <- Minus
X 18786599..18787340 618..1359 100 <- Minus
X 18787398..18787918 97..617 100 <- Minus
X 18787981..18788060 17..96 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:51:58 Download gff for BO10215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18680495..18680575 1360..1440 97 <- Minus
arm_X 18680632..18681373 618..1359 100 <- Minus
arm_X 18681431..18681951 97..617 100 <- Minus
arm_X 18682014..18682093 17..96 100   Minus

BO10215.pep Sequence

Translation from 16 to 1456

> BO10215.pep
MDIDLSLDEIIERKRGQRGYRPLDRKFNANFSKPRQLLNKPFFKPSGARG
SHSDMPAKRTFDARNTIAAKTRAKIADARDLINKSVRDSGIDARQLLLER
KKARSAGPILIDDEEESFEPSHRARGKGVHIGQFGHRLSMSNHADGTIQA
KWDSDDGVVELGNHMLSGLRRTFDPRSHKPGKPFAPRRYIDLDNMQDLED
EEISRTLHLGQMKQASPRYSIGGLDLNRGDDVEMSMAPLNNKIDNNAFSI
YEAARNRIERPSLTNRLVVGRSNSTKEPLERRHRDTVSTSKLPESLRSRL
FVGKRDPHISHGIYANENRRKAVGGGGGSDSDSGTDSDGDAAAPSKNKRR
SPSPLSLRTSNTKDGYRLLVSNLHTNVTTADIRELFSDIGPVYDARVVRP
GTAEVIYKSLEHAEKAVDTYHHRQFDDQPMHCVLVNPHSSRRSVHKASSR
TVTTNSSGVEVDIDALHSVLFRARASFLDH

BO10215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6961-PA 474 CG6961-PA 1..474 1..474 2449 100 Plus
CG18259-PA 474 CG18259-PA 1..474 1..474 2421 98.7 Plus