Clone BO10218 Report

Search the DGRC for BO10218

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCul-2-RA
Protein status:BO10218.pep: validated full length
Sequenced Size:2293

Clone Sequence Records

BO10218.3prime Sequence

950 bp (909 high quality bases) assembled on 2006-04-19

> BO10218.3prime
ATGGTCTAGAAAGCTTGCTGCCATGTAGCTATATTCATCGCCCGAGTTCG
CCGTTCGCTCAATATATTGTTTGTCAATTAATGACTCCACGCATTTCTTG
ATCATTGCTATGTTGGGAGTAAAGCTAACCTTCGATAAAGAGAGAACCTC
TTGTATTAAGGCATTGTGCTTTAAGACTTTACGCGCTTTCATAATCCTTA
CAATGGCGGCTTGTAGAAAGAGTTTTCGGTCCTCATCTACCGAGTTAATT
GTGTGCTCAACCTCCTGTGGCGTTTCTTTTTGCAAAGCCGAACTTATTTT
AAACTTTGTACGCTTATTTGTGTAATCCAAATTTAATTCTATTCGAGTCT
CACCGGCGAGATTCTCTGAGCTGGCATTTAAAAGCTTTGACTCGATAATA
GGCTGCATGTGCTTTTGAAACGTTTCGTCGTTTAGCTGTAAGGTGTTCTG
GATCTCCCGACAACTCAGACTATCACAAGTCTCGAACAGCAGTATTATCG
CCATCTGGTATGTTTGCATAGTCACGATATAAGATTTTTTCAAATGGCTC
AACTTTAATTCTCCATGACACATGTGATGTAGCCAAGTCAACTTCCGGCC
ACTAAATAATTTATGATAGTAATCCTCGAACATTTTAATAGATTTTTCAA
ATTCCTGTGGTACTGCAAATGGTATAACTTGAGTAGATCCCAAGGGCCAC
GCGCCCGCCTGCAGTACCTTAATGGCAAGGTTGATGCCTAAGTCCACATT
GCTATCCTTAAGGTGAGTATTAAACTTGTTGTTCAGATCTACTGATACCG
ATATATCCGTAAACATGCGATGAAGTTTATTGGTAAATTCATAACCGCAN
GCTTGCTTCAACGATTGATCATTCCCTCCTCCGCATCCATGCTCTGACTT
TGCTCGTGGATTANGCGCTTGNCTAACAGTCGGCTATAAAACTTTTGATA

BO10218.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1512-PA 2262 cul-2-RA 1417..2259 861..19 4196 99.8 Minus
CG1512-PB 2262 cul-2-RB 1417..2259 861..19 4196 99.8 Minus
CG1512-PA 2262 cul-2-RA 1327..1417 950..860 417 97.8 Minus
CG1512-PB 2262 cul-2-RB 1327..1417 950..860 417 97.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 03:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
Cul2-RB 2831 CG1512-RB 1506..2438 950..19 4607 99.6 Minus
Cul2-RA 3426 CG1512-RA 1613..2545 950..19 4607 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 03:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21662083..21662454 631..260 1860 100 Minus
2L 23513712 2L 21662687..21662817 149..19 655 100 Minus
2L 23513712 2L 21661346..21661466 857..737 594 99.2 Minus
2L 23513712 2L 21662516..21662633 263..146 590 100 Minus
2L 23513712 2L 21661528..21661636 739..631 545 100 Minus
2L 23513712 2L 21661105..21661195 950..860 433 97.8 Minus
Blast to na_te.dros performed 2015-02-09 03:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT1 769 Dbuz\BuT1 BUT1 769bp 367..421 654..600 113 67.3 Minus

BO10218.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:16 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
cul-2-PB 1328..2262 18..949 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:53 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1512-PB 1328..2262 18..949 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 06:20:42 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul-2-RA 1614..2545 19..949 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:27:32 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
Cul2-RA 1614..2545 19..949 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:27:32 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21661348..21661465 738..855 99 -> Minus
2L 21661530..21661636 631..737 100 -> Minus
2L 21661106..21661200 856..949 96 -> Minus
2L 21662689..21662817 19..147 100   Minus
2L 21662084..21662452 262..630 100 -> Minus
2L 21662518..21662631 148..261 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 06:20:42 Download gff for BO10218.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21662518..21662631 148..261 100 -> Minus
arm_2L 21662689..21662817 19..147 100   Minus
arm_2L 21661106..21661200 856..949 96 -> Minus
arm_2L 21661348..21661465 738..855 99 -> Minus
arm_2L 21661530..21661636 631..737 100 -> Minus
arm_2L 21662084..21662452 262..630 100 -> Minus

BO10218.5prime Sequence

838 bp (837 high quality bases) assembled on 2006-04-19

> BO10218.5prime
GAAGTTATCAGTCGACATGTCGCTCAAGCCCAAAATAGTGGAGTTTGTCG
ATGTTTGGCCGCGCCTGCGCTGCATCGCCGAGTCGGTGATAACGCTCACC
AAAGTGGAGCGCTCGGTGTGGAATACTAGCTTCAGCGACGTTTACACACT
GTGCGTGGCGCAGCCGGAACCGATGGCTGATCGTCTTTATGGCGAAACAA
AACACTTTCTTGAGCAGCACGTCCAGGAGATGCTGGCCAAAAAGGTGCTG
ATCGAGGGAGAATGCTCCCATTCCAATGGTGGCCCAGACCTTCTCCAGCG
TTACTACATCACCTGGATGGAATATAGCCAGGGTATCAAGTATCTGCACC
AATTGTACATCTACCTGAATCAACAACACATCAAGAAACAAAAGATTACC
GATACGGAATCGTTCTACGGTAATCTGTCAAGCGATGCTGCGGAGCAGAT
GGAGATTGGCGAGCTAGGTCTAGACATTTGGCGCCTGTATATGATTGAGT
ACTTGTCCAGCGAACTGGTCCGTCACATACTCGAGGGCATTGCCGCAGAC
AGAGCTAGCAATGGCACCTTGGATCACCATCGCGTGCAAATTATCAACGG
AGTGATACACAGCTTCGTGGAGGTACAGGACTATAAGAAAACAGGCTCGC
TTAAGCTCTACCAGGAACTCTTTGAAGGCCCCATGCTGGAGGCCAGTGGC
GCCTACTACACAGACGAGGCTAACAAGTTGCTCCATCGGTGCTCAGTGTC
GGAGTACATGCAGGAGGTTATCCGGATACTGGAATATGAAAGCCGGAGAG
CCCAAAAGTTTTTACACGTCAGTTCCCTGCCAAAACTA

BO10218.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1512-PA 2262 cul-2-RA 1..822 17..838 4110 100 Plus
CG1512-PB 2262 cul-2-RB 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cul2-RB 2831 CG1512-RB 177..1001 14..838 4125 100 Plus
Cul2-RA 3426 CG1512-RA 284..1108 14..838 4125 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21660123..21660600 361..838 2390 100 Plus
2L 23513712 2L 21659838..21660064 134..360 1135 100 Plus
2L 23513712 2L 21659151..21659272 14..135 610 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:43 has no hits.

BO10218.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:17 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
cul-2-PB 1..821 17..837 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:54 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1512-PB 1..821 17..837 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:50:16 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul-2-RA 279..1107 9..837 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:03 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
Cul2-RA 279..1107 9..837 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:03 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21659146..21659272 9..135 98 -> Plus
2L 21659840..21660064 136..360 100 -> Plus
2L 21660123..21660599 361..837 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:50:16 Download gff for BO10218.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21659146..21659272 9..135 98 -> Plus
arm_2L 21659840..21660064 136..360 100 -> Plus
arm_2L 21660123..21660599 361..837 100   Plus

BO10218.complete Sequence

2293 bp (2293 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631684

> BO10218.complete
GAAGTTATCAGTCGACATGTCGCTCAAGCCCAAAATAGTGGAGTTTGTCG
ATGTTTGGCCGCGCCTGCGCTGCATCGCCGAGTCGGTGATAACGCTCACC
AAAGTGGAGCGCTCGGTGTGGAATACTAGCTTCAGCGACGTTTACACACT
GTGCGTGGCGCAGCCGGAACCGATGGCTGATCGTCTTTATGGCGAAACAA
AACACTTTCTTGAGCAGCACGTCCAGGAGATGCTGGCCAAAAAGGTGCTG
ATCGAGGGAGAATGCTCCCATTCCAATGGTGGCCCAGACCTTCTCCAGCG
TTACTACATCACCTGGATGGAATATAGCCAGGGTATCAAGTATCTGCACC
AATTGTACATCTACCTGAATCAACAACACATCAAGAAACAAAAGATTACC
GATACGGAATCGTTCTACGGTAATCTGTCAAGCGATGCTGCGGAGCAGAT
GGAGATTGGCGAGCTAGGTCTAGACATTTGGCGCCTGTATATGATTGAGT
ACTTGTCCAGCGAACTGGTCCGTCACATACTCGAGGGCATTGCCGCAGAC
AGAGCTAGCAATGGCACCTTGGATCACCATCGCGTGCAAATTATCAACGG
AGTGATACACAGCTTCGTGGAGGTACAGGACTATAAGAAAACAGGCTCGC
TTAAGCTCTACCAGGAACTCTTTGAAGGCCCCATGCTGGAGGCCAGTGGC
GCCTACTACACAGACGAGGCTAACAAGTTGCTCCATCGGTGCTCAGTGTC
GGAGTACATGCAGGAGGTTATCCGGATACTGGAATATGAAAGCCGGAGAG
CCCAAAAGTTTTTACACGTCAGTTCCCTGCCAAAACTACGTAAAGAGTGC
GAGGAGAAGTTTATTAACGATCGTTTGGGCTTCATCTACTCGGAGTGCCG
CGAAATGGTTTCAGAGGAGCGGCGCCAAGACTTACGCAACATGTACGTCG
TACTAAAGCCCATACCCGATAATCTCAAGTCTGAGCTCATAACCACCTTC
CTCGATCACATCAAAAGTGAAGGTCTGCAGACCGTATCTGCGCTGAAGGG
CGAAAACATCCATATTGCGTTCGTAGAGAATATGTTGAAGGTACATCACA
AGTACCAAGAGCTGATCGCAGACGTCTTCGAAAACGATTCTCTATTCCTG
AGCGCATTAGACAAGGCGTGCGCCAGCGTTATCAATCGCCGGCCAACCGA
GCGGCAGCCTTGCCGTAGTGCCGAGTATGTGGCGAAATACTGTGATACGC
TACTGAAAAAGTCTAAGACCTGCGAGGCAGAGATCGATCAAAAGCTTACT
AACAACATAACCATATTTAAATATATCGAGGATAAGGATGTGTATCAAAA
GTTTTATAGCCGACTGTTAGCCAAGCGCCTAATCCACGAGCAAAGTCAGA
GCATGGATGCGGAGGAGGGAATGATCAATCGTTTGAAGCAAGCCTGCGGT
TATGAATTTACCAATAAACTTCATCGCATGTTTACGGATATATCGGTATC
AGTAGATCTGAACAACAAGTTTAATACTCACCTTAAGGATAGCAATGTGG
ACTTAGGCATCAACCTTGCCATTAAGGTACTGCAGGCGGGCGCGTGGCCC
TTGGGATCTACTCAAGTTATACCATTTGCAGTACCACAGGAATTTGAAAA
ATCTATTAAAATGTTCGAGGATTACTATCATAAATTATTTAGTGGCCGGA
AGTTGACTTGGCTACATCACATGTGTCATGGAGAATTAAAGTTGAGCCAT
TTGAAAAAATCTTATATCGTGACTATGCAAACATACCAGATGGCGATAAT
ACTGCTGTTCGAGACTTGTGATAGTCTGAGTTGTCGGGAGATCCAGAACA
CCTTACAGCTAAACGACGAAACGTTTCAAAAGCACATGCAGCCTATTATC
GAGTCAAAGCTTTTAAATGCCAGCTCAGAGAATCTCGCCGGTGAGACTCG
AATAGAATTAAATTTGGATTACACAAATAAGCGTACAAAGTTTAAAATAA
GTTCGGCTTTGCAAAAAGAAACGCCACAGGAGGTTGAGCACACAATTAAC
TCGGTAGATGAGGACCGAAAACTCTTTCTACAAGCCGCCATTGTAAGGAT
TATGAAAGCGCGTAAAGTCTTAAAGCACAATGCCTTAATACAAGAGGTTC
TCTCTTTATCGAAGGTTAGCTTTACTCCCAACATAGCAATGATCAAGAAA
TGCGTGGAGTCATTAATTGACAAACAATATATTGAGCGAACGGCGAACTC
GGGCGATGAATATAGCTACATGGCAGCAAGCTTTCTAGACCAT

BO10218.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cul2-RB 2262 CG1512-PB 1..2259 17..2275 11295 100 Plus
Cul2-RA 2262 CG1512-PA 1..2259 17..2275 11295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Cul2-RB 2831 CG1512-RB 177..2438 14..2275 11310 100 Plus
Cul2-RA 3426 CG1512-RA 284..2545 14..2275 11310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21660123..21661200 361..1438 5390 100 Plus
2L 23513712 2L 21662083..21662454 1663..2034 1860 100 Plus
2L 23513712 2L 21659838..21660064 134..360 1135 100 Plus
2L 23513712 2L 21662687..21662817 2145..2275 655 100 Plus
2L 23513712 2L 21659151..21659272 14..135 610 100 Plus
2L 23513712 2L 21661346..21661466 1437..1557 605 100 Plus
2L 23513712 2L 21662516..21662633 2031..2148 590 100 Plus
2L 23513712 2L 21661528..21661636 1555..1663 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:16:32 has no hits.

BO10218.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:24 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
cul-2-RB 1..2262 17..2276 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:58 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
cul-2-RB 155..2421 9..2275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:39:10 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
Cul-2-RA 287..2545 17..2277 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:24 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
cul-2-RB 155..2421 9..2275 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:56 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
Cul2-RA 287..2545 17..2277 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:56 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21662518..21662631 2033..2146 100 -> Plus
2L 21662689..21662817 2147..2277 98   Plus
2L 21662084..21662452 1664..2032 100 -> Plus
2L 21659154..21659272 17..135 100 -> Plus
2L 21659840..21660064 136..360 100 -> Plus
2L 21660123..21661200 361..1438 100 -> Plus
2L 21661348..21661465 1439..1556 100 -> Plus
2L 21661530..21661636 1557..1663 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:39:10 Download gff for BO10218.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21659154..21659272 17..135 100 -> Plus
arm_2L 21659840..21660064 136..360 100 -> Plus
arm_2L 21660123..21661200 361..1438 100 -> Plus
arm_2L 21661348..21661465 1439..1556 100 -> Plus
arm_2L 21661530..21661636 1557..1663 100 -> Plus
arm_2L 21662084..21662452 1664..2032 100 -> Plus
arm_2L 21662518..21662631 2033..2146 100 -> Plus
arm_2L 21662689..21662817 2147..2277 98   Plus

BO10218.pep Sequence

Translation from 16 to 2293

> BO10218.pep
MSLKPKIVEFVDVWPRLRCIAESVITLTKVERSVWNTSFSDVYTLCVAQP
EPMADRLYGETKHFLEQHVQEMLAKKVLIEGECSHSNGGPDLLQRYYITW
MEYSQGIKYLHQLYIYLNQQHIKKQKITDTESFYGNLSSDAAEQMEIGEL
GLDIWRLYMIEYLSSELVRHILEGIAADRASNGTLDHHRVQIINGVIHSF
VEVQDYKKTGSLKLYQELFEGPMLEASGAYYTDEANKLLHRCSVSEYMQE
VIRILEYESRRAQKFLHVSSLPKLRKECEEKFINDRLGFIYSECREMVSE
ERRQDLRNMYVVLKPIPDNLKSELITTFLDHIKSEGLQTVSALKGENIHI
AFVENMLKVHHKYQELIADVFENDSLFLSALDKACASVINRRPTERQPCR
SAEYVAKYCDTLLKKSKTCEAEIDQKLTNNITIFKYIEDKDVYQKFYSRL
LAKRLIHEQSQSMDAEEGMINRLKQACGYEFTNKLHRMFTDISVSVDLNN
KFNTHLKDSNVDLGINLAIKVLQAGAWPLGSTQVIPFAVPQEFEKSIKMF
EDYYHKLFSGRKLTWLHHMCHGELKLSHLKKSYIVTMQTYQMAIILLFET
CDSLSCREIQNTLQLNDETFQKHMQPIIESKLLNASSENLAGETRIELNL
DYTNKRTKFKISSALQKETPQEVEHTINSVDEDRKLFLQAAIVRIMKARK
VLKHNALIQEVLSLSKVSFTPNIAMIKKCVESLIDKQYIERTANSGDEYS
YMAASFLDH

BO10218.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cul2-PB 753 CG1512-PB 1..753 1..753 3886 100 Plus
Cul2-PA 753 CG1512-PA 1..753 1..753 3886 100 Plus
Cul1-PD 774 CG1877-PD 12..774 6..753 1071 33.1 Plus
Cul1-PA 774 CG1877-PA 12..774 6..753 1071 33.1 Plus
Cul1-PB 774 CG1877-PB 12..774 6..753 1071 33.1 Plus