Clone Sequence Records
BO10221.3prime Sequence
782 bp (781 high quality bases) assembled on 2006-04-19
> BO10221.3prime
ATGGTCTAGAAAGCTTGCTAACTTGGACTTTGGATTGGTGTTGCGCGCAA
AGAAGATTTCCGGATCCTTGTGCGGACGCTGGATCTCGCGATAATTGTTG
ACTATCTTTTTGGACTCATCTTTGGGACACGATTGCAAATTGCGAAACAC
CTGAACCTGGCCGCGAGACACATAGATGGGGGTGCGGTATATGATCCAGG
TGACACTCTCAAAGTACGGCGCCGTTGTCAGCGAACCCTTGTACGTGTAA
TAATGTTTGCTCAGCTCCTGCAGACCAATCCATGATAGGCAATCGGAATC
CAGCGATGCACTCGTATGGATCTTTTGAACGATGCGGATGCCCTCGGTGA
TCTTCTTGAACTCGGGACAGTCCTTCTCGCCGCAGGCCTGAATAAAGAAT
GCGACGACGGCCAGGCCATCGGGCTTGTTCTTGGCCTCCGTGAAGTCCTT
GTACTTCGAATTGTAGTGGACGGCATGGGCCTCCATTGAGTACTTCATGC
CCTCCAGTGTATGCTCGCAGCCGGATTCATCGCAGTCCGACCAATGGAAG
TGCAGCTGCTCGAACACGTACATGTCCTGCTCCAGGGCACCGCCGATTAT
GTATGGCTGTTGTTTTCGCTTGCTGAATGTGACCATTGCGGAGGTGCCTG
TGTTCTGTACCCGGGCCACGCCCACCGGCTCCCAATGGCCATGGTACTCT
AGTGGATCCACATCGTCAATGTGCTCGATGGCACGGTTGCTGATCTCAAT
TGGGGATTGTACGGGCATGTCGACTGATAACT
BO10221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PA | 753 | CG11284-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1723 | 768..19 | 3750 | 100 | Minus |
CG11284-RD | 1650 | CG11284-RD | 315..1064 | 768..19 | 3750 | 100 | Minus |
CG11284-RC | 1897 | CG11284-RC | 562..1311 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 768..294 | 2375 | 100 | Minus |
X | 23542271 | X | 8688034..8688174 | 159..19 | 705 | 100 | Minus |
X | 23542271 | X | 8687817..8687956 | 294..155 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:20:29 has no hits.
BO10221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:20 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:58 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:19 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 460..1218 | 15..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:54 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 556..1314 | 15..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:54 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687262..8687742 | 294..775 | 99 | -> | Minus |
X | 8687818..8687954 | 157..293 | 100 | -> | Minus |
X | 8688037..8688177 | 15..156 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:19 Download gff for
BO10221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581295..8581775 | 294..775 | 99 | -> | Minus |
arm_X | 8581851..8581987 | 157..293 | 100 | -> | Minus |
arm_X | 8582070..8582210 | 15..156 | 98 | | Minus |
BO10221.5prime Sequence
782 bp (781 high quality bases) assembled on 2006-04-19
> BO10221.5prime
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTAGCAAGCTTTCTAGACC
BO10221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PA | 753 | CG11284-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1723 | 17..766 | 3750 | 100 | Plus |
CG11284-RD | 1650 | CG11284-RD | 315..1064 | 17..766 | 3750 | 100 | Plus |
CG11284-RC | 1897 | CG11284-RC | 562..1311 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 17..491 | 2375 | 100 | Plus |
X | 23542271 | X | 8688034..8688174 | 626..766 | 705 | 100 | Plus |
X | 23542271 | X | 8687817..8687956 | 491..630 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:21:37 has no hits.
BO10221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:21 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:44:59 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-PA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:58:11 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 460..1218 | 10..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:44:58 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 556..1314 | 10..770 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:44:58 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687262..8687742 | 10..491 | 99 | -> | Plus |
X | 8687818..8687954 | 492..628 | 100 | -> | Plus |
X | 8688037..8688177 | 629..770 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:58:11 Download gff for
BO10221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581295..8581775 | 10..491 | 99 | -> | Plus |
arm_X | 8581851..8581987 | 492..628 | 100 | -> | Plus |
arm_X | 8582070..8582210 | 629..770 | 98 | | Plus |
BO10221.complete Sequence
784 bp (784 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631685
> BO10221.complete
GAAGTTATCAGTCGACATGCCCGTACAATCCCCAATTGAGATCAGCAACC
GTGCCATCGAGCACATTGACGATGTGGATCCACTAGAGTACCATGGCCAT
TGGGAGCCGGTGGGCGTGGCCCGGGTACAGAACACAGGCACCTCCGCAAT
GGTCACATTCAGCAAGCGAAAACAACAGCCATACATAATCGGCGGTGCCC
TGGAGCAGGACATGTACGTGTTCGAGCAGCTGCACTTCCATTGGTCGGAC
TGCGATGAATCCGGCTGCGAGCATACACTGGAGGGCATGAAGTACTCAAT
GGAGGCCCATGCCGTCCACTACAATTCGAAGTACAAGGACTTCACGGAGG
CCAAGAACAAGCCCGATGGCCTGGCCGTCGTCGCATTCTTTATTCAGGCC
TGCGGCGAGAAGGACTGTCCCGAGTTCAAGAAGATCACCGAGGGCATCCG
CATCGTTCAAAAGATCCATACGAGTGCATCGCTGGATTCCGATTGCCTAT
CATGGATTGGTCTGCAGGAGCTGAGCAAACATTATTACACGTACAAGGGT
TCGCTGACAACGGCGCCGTACTTTGAGAGTGTCACCTGGATCATATACCG
CACCCCCATCTATGTGTCTCGCGGCCAGGTTCAGGTGTTTCGCAATTTGC
AATCGTGTCCCAAAGATGAGTCCAAAAAGATAGTCAACAATTATCGCGAG
ATCCAGCGTCCGCACAAGGATCCGGAAATCTTCTTTGCGCGCAACACCAA
TCCAAAGTCCAAGTTAGCAAGCTTTCTAGACCAT
BO10221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 753 | CG11284-PE | 1..750 | 17..766 | 3750 | 100 | Plus |
CG11284-RD | 753 | CG11284-PD | 1..750 | 17..766 | 3750 | 100 | Plus |
CG11284-RC | 753 | CG11284-PC | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-RE | 2309 | CG11284-RE | 974..1723 | 17..766 | 3750 | 100 | Plus |
CG11284-RD | 1650 | CG11284-RD | 315..1064 | 17..766 | 3750 | 100 | Plus |
CG11284-RC | 1897 | CG11284-RC | 562..1311 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8687268..8687742 | 17..491 | 2375 | 100 | Plus |
X | 23542271 | X | 8688034..8688174 | 626..766 | 705 | 100 | Plus |
X | 23542271 | X | 8687817..8687956 | 491..630 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:02:10 has no hits.
BO10221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:08 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 1..753 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:37 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 638..1396 | 10..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:01 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RB | 466..1215 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:08 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RA | 638..1396 | 10..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:09:42 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11284-RC | 562..1311 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:09:42 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8687268..8687742 | 17..491 | 100 | -> | Plus |
X | 8687818..8687954 | 492..628 | 100 | -> | Plus |
X | 8688037..8688174 | 629..768 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:01 Download gff for
BO10221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8581301..8581775 | 17..491 | 100 | -> | Plus |
arm_X | 8581851..8581987 | 492..628 | 100 | -> | Plus |
arm_X | 8582070..8582207 | 629..768 | 98 | | Plus |
BO10221.pep Sequence
Translation from 16 to 784
> BO10221.pep
MPVQSPIEISNRAIEHIDDVDPLEYHGHWEPVGVARVQNTGTSAMVTFSK
RKQQPYIIGGALEQDMYVFEQLHFHWSDCDESGCEHTLEGMKYSMEAHAV
HYNSKYKDFTEAKNKPDGLAVVAFFIQACGEKDCPEFKKITEGIRIVQKI
HTSASLDSDCLSWIGLQELSKHYYTYKGSLTTAPYFESVTWIIYRTPIYV
SRGQVQVFRNLQSCPKDESKKIVNNYREIQRPHKDPEIFFARNTNPKSKL
ASFLDH
BO10221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11284-PE | 250 | CG11284-PE | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PD | 250 | CG11284-PD | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PC | 250 | CG11284-PC | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PB | 250 | CG11284-PB | 1..250 | 1..250 | 1351 | 100 | Plus |
CG11284-PA | 250 | CG11284-PA | 1..250 | 1..250 | 1351 | 100 | Plus |