Clone Sequence Records
BO10225.3prime Sequence
934 bp (804 high quality bases) assembled on 2006-04-19
> BO10225.3prime
ATGGTCTAGAATGCTTGCGGAGCCATAGCTACCACTCGCCTTGCGCTGCT
TGTGCAACTCCAGGCCCAGACCGACGCCGCCCAGATCCGTCATTTTTGGC
TGCTCCGCCATGGCTGACAGCTGCGGCTGTGGCTGCAACGGTGGCGGCTG
CGGCGCCACATGTCTGTGATTGATGTGCGCCTGCAGGTCGCGTTGCGAAA
GGTATGTTCTACGGCAGCCGGAGCTGCCGTAGCGACTGCCGCCGTGCGTG
CACATGAACACGGTGCCCAGGCCACTCTGCTCCACGCGCAACACCTTGTC
CGTGCAGCGGGGACAACTCTTGATGGGCTCGGCGCGGGCGCACTTGAGGC
AAAATACATGCTTGCAGGGTATCATGCGGCCGTAGACGAGGATCGGCTTG
TCGCACTGATCGCAGCAGTGGATCATCGGGTTCAGCACCTTCTCGCCGAT
CAGGCTCACCTTGTGGTTCCACTTAAGGCGCAGCATCGGCTCCGGCGGTC
CGCGCGAAAGCGTGGTGAAAGTGGGCGCCTCCAGTTGCGATATGTCCGCC
TCCATGTCGATTGTTTGGCTCATCACGGGCGGTGGCACTTGCTGCAGGAC
CTGTGGCTGTTGCGTCGCTGGAGTCATGTTCCCGCTGGCGGCGACCGCTC
CTAGCGCACCGTGCGGCAGGGGCTCCTCCAGAGCGCCGGGCGTTTCCAGT
TCGCCGTCCTTGTCGAGCTCCTGCATGACCGAATCTTCGGAGGCGTCCAG
TCTTCCCGGACTGTCCTCCAGGGCTGCACAGCTGCTGGCCGCCAGGGCTG
CGGCGTCGGCGATGCTGCTGTCGTCGATTTTCTTGCCACGACCGCGTCCT
CGGCCACGTCCGCGCCCGCGAGCCCTGGTGCCACGCCCTCGTCCGCGGGC
GCGCTTCACTTCCTCGGTGTCCATGTCAACTGAT
BO10225.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10263-PA | 909 | CG10263-RA | 1..906 | 924..19 | 4505 | 99.8 | Minus |
CG10263-PD | 1359 | CG10263-RD | 1..849 | 924..76 | 4220 | 99.8 | Minus |
CG10263-PC | 936 | CG10263-RC | 392..933 | 560..19 | 2710 | 100 | Minus |
CG10263-PC | 936 | CG10263-RC | 1..364 | 924..561 | 1795 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hakai-RA | 1733 | CG10263-RA | 105..1010 | 924..19 | 4515 | 99.9 | Minus |
Hakai-RE | 1663 | CG10263-RE | 105..989 | 924..40 | 4410 | 99.9 | Minus |
Hakai-RC | 1760 | CG10263-RC | 496..1037 | 560..19 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19581335..19581876 | 19..560 | 2710 | 100 | Plus |
2L | 23513712 | 2L | 19582007..19582370 | 561..924 | 1805 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:05:31 has no hits.
BO10225.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:27 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-PA | 1..909 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:06 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-PA | 1..909 | 15..924 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:49 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 94..1013 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:43 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 94..1013 | 15..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:43 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19581331..19581876 | 15..560 | 99 | <- | Plus |
2L | 19582007..19582379 | 561..934 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:49 Download gff for
BO10225.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19581331..19581876 | 15..560 | 99 | <- | Plus |
arm_2L | 19582007..19582379 | 561..934 | 98 | | Plus |
BO10225.5prime Sequence
884 bp (838 high quality bases) assembled on 2006-04-19
> BO10225.5prime
GAAGTTATCAGTCGACATGGACACCGAGGAAGTGAAGCGCGGCCGCGGAC
GAGGGCGTGGCACCAGGGCTCGCGGGCGCGGACGTGGCCGAGGACGCGGT
CGTGGCAAGAAAATCGACGACAGCAGCATCGCCGACGCCGCAGCCCTGGC
GGCCAGCAGCTGTGCAGCCCTGGAGGACAGTCCGGGAAGACTGGACGCCT
CCGAAGATTCGGTCATGCAGGAGCTCGACAAGGACGGCGAACTGGAAACG
CCCGGCGCTCTGGAGGAGCCCCTGCCGCACGGTGCGCTAGGAGCGGTCGC
CGCCAGCGGGAACATGACTCCAGCGACGCAACAGCCACAGGTCCTGCAGC
AAGTGCCACCGCCCGTGATGAGCCAAACAATCGACATGGAGGCGGACATA
TCGCAACTGGAGGCGCCCACTTTCACCACGCTTTCGCGCGGACCGCCGGA
GCCGATGCTGCGCCTTAAGTGGAACCACAAGGTGAGCCTGATCGGCGAGA
AGGTGCTGAACCCGATGATCCACTGCTGCGATCAGTGCGACAAGCCGATC
CTCGTCTACGGCCGCATGATACCCTGCAAGCATGTATTTTGCCTCAAGTG
CGCCCGCGCCGAGCCCATCAAGAGTTGTCCCCGCTGCACGGACAAGGTGT
TGCGCGTGGAGCAGAGTGGCCTGGGCACCGTGTTCATGTGCACGCACGGC
GGCAGTCGCTACGGCAGCTCCGGCTGCCGTAGAACATACCTTTCGCAACG
CGACCTGCAGGCGCACATCAATCACAGACATGTGGCGCCGCAGCCGCCAC
CGTTGCAGCCACAGCCGCAGCTGTCAGCCATGGCGGAGCAGCCAAAAATG
ACGGATCTGGGCGGCGTCGGTCTGGGCCTGGAGT
BO10225.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:58:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10263-PA | 909 | CG10263-RA | 1..868 | 17..884 | 4340 | 100 | Plus |
CG10263-PD | 1359 | CG10263-RD | 1..849 | 17..865 | 4245 | 100 | Plus |
CG10263-PC | 936 | CG10263-RC | 392..895 | 381..884 | 2520 | 100 | Plus |
CG10263-PC | 936 | CG10263-RC | 1..364 | 17..380 | 1820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hakai-RE | 1663 | CG10263-RE | 105..972 | 17..884 | 4340 | 100 | Plus |
Hakai-RA | 1733 | CG10263-RA | 105..972 | 17..884 | 4340 | 100 | Plus |
Hakai-RF | 1690 | CG10263-RF | 496..999 | 381..884 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19581373..19581876 | 884..381 | 2520 | 100 | Minus |
2L | 23513712 | 2L | 19582007..19582370 | 380..17 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:53 has no hits.
BO10225.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:28 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:07 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-PA | 1..868 | 17..884 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:19 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 93..972 | 6..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:53 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 93..972 | 6..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:53 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19581373..19581876 | 381..884 | 100 | <- | Minus |
2L | 19582007..19582382 | 6..380 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:19 Download gff for
BO10225.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19581373..19581876 | 381..884 | 100 | <- | Minus |
arm_2L | 19582007..19582382 | 6..380 | 98 | | Minus |
BO10225.complete Sequence
940 bp assembled on 2008-08-15
> BO10225.complete
GAAGTTATCAGTCGACATGGACACCGAGGAAGTGAAGCGCGGCCGCGGAC
GAGGGCGTGGCACCAGGGCTCGCGGGCGCGGACGTGGCCGAGGACGCGGT
CGTGGCAAGAAAATCGACGACAGCAGCATCGCCGACGCCGCAGCCCTGGC
GGCCAGCAGCTGTGCAGCCCTGGAGGACAGTCCGGGAAGACTGGACGCCT
CCGAAGATTCGGTCATGCAGGAGCTCGACAAGGACGGCGAACTGGAAACG
CCCGGCGCTCTGGAGGAGCCCCTGCCGCACGGTGCGCTAGGAGCGGTCGC
CGCCAGCGGGAACATGACTCCAGCGACGCAACAGCCACAGGTCCTGCAGC
AAGTGCCACCGCCCGTGATGAGCCAAACAATCGACATGGAGGCGGACATA
TCGCAACTGGAGGCGCCCACTTTCACCACGCTTTCGCGCGGACCGCCGGA
GCCGATGCTGCGCCTTAAGTGGAACCACAAGGTGAGCCTGATCGGCGAGA
AGGTGCTGAACCCGATGATCCACTGCTGCGATCAGTGCGACAAGCCGATC
CTCGTCTACGGCCGCATGATACCCTGCAAGCATGTATTTTGCCTCAAGTG
CGCCCGCGCCGAGCCCATCAAGAGTTGTCCCCGCTGCACGGACAAGGTGT
TGCGCGTGGAGCAGAGTGGCCTGGGCACCGTGTTCATGTGCACGCACGGC
GGCAGTCGCTACGGCAGCTCCGGCTGCCGTAGAACATACCTTTCGCAACG
CGACCTGCAGGCGCACATCAATCACAGACATGTGGCGCCGCAGCCGCCAC
CGTTGCAGCCACAGCCGCAGCTGTCAGCCATGGCGGAGCAGCCAAAAATG
ACGGATCTGGGCGGCGTCGGTCTGGGCCTGGAGTTGCACAAGCAGCGCAA
GGCGAGTGGTAGCTATGGCTCCGCAAGCATTCTAGACCAT
BO10225.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:16:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hakai-RA | 909 | CG10263-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Hakai-RE | 1395 | CG10263-PE | 1..885 | 17..901 | 4425 | 100 | Plus |
Hakai-RC | 936 | CG10263-PC | 392..933 | 381..922 | 2710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hakai-RA | 1733 | CG10263-RA | 105..1010 | 17..922 | 4530 | 100 | Plus |
Hakai-RE | 1663 | CG10263-RE | 105..989 | 17..901 | 4425 | 100 | Plus |
Hakai-RC | 1760 | CG10263-RC | 496..1037 | 381..922 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19581335..19581876 | 922..381 | 2710 | 100 | Minus |
2L | 23513712 | 2L | 19582007..19582370 | 380..17 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:16:18 has no hits.
BO10225.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:32 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-RA | 116..1036 | 6..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:28:23 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 105..1010 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:57:08 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10263-RA | 128..1033 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:34 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hakai-RA | 105..1010 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:34 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19581333..19581876 | 381..924 | 99 | <- | Minus |
2L | 19582007..19582370 | 17..380 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:28:23 Download gff for
BO10225.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19581333..19581876 | 381..924 | 99 | <- | Minus |
arm_2L | 19582007..19582370 | 17..380 | 100 | | Minus |
BO10225.pep Sequence
Translation from 16 to 940
> BO10225.pep
MDTEEVKRGRGRGRGTRARGRGRGRGRGRGKKIDDSSIADAAALAASSCA
ALEDSPGRLDASEDSVMQELDKDGELETPGALEEPLPHGALGAVAASGNM
TPATQQPQVLQQVPPPVMSQTIDMEADISQLEAPTFTTLSRGPPEPMLRL
KWNHKVSLIGEKVLNPMIHCCDQCDKPILVYGRMIPCKHVFCLKCARAEP
IKSCPRCTDKVLRVEQSGLGTVFMCTHGGSRYGSSGCRRTYLSQRDLQAH
INHRHVAPQPPPLQPQPQLSAMAEQPKMTDLGGVGLGLELHKQRKASGSY
GSASILDH
BO10225.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hakai-PA | 302 | CG10263-PA | 1..302 | 1..302 | 1600 | 100 | Plus |
Hakai-PC | 311 | CG10263-PC | 1..311 | 1..302 | 1579 | 96.8 | Plus |
Hakai-PE | 464 | CG10263-PE | 1..299 | 1..299 | 1570 | 99.3 | Plus |
Hakai-PF | 473 | CG10263-PF | 1..308 | 1..299 | 1549 | 96.1 | Plus |