Clone Sequence Records
BO10231.3prime Sequence
898 bp (848 high quality bases) assembled on 2006-04-19
> BO10231.3prime
ATGGTCTAGAAAGCTTGCGTCCACCTCCAGTTTCCTAAAACTGCCCACGA
CACCGGCATCGATGTCGCCGATATCATTACCAGCAAAATTGGCCGCATCC
TTGGTCACCTCGATCTGCATGTCGTCGAGTGCAAGGATTGCCGCCCGGCG
TTGCTGCAACTTCTGTTTGAACTGGGCGATCATATCGGCAATGGGCACGG
TGCCACCATATTCCTTGGGCAGGATGGCGGGATCGATCTTTGTCTTCAAA
ATGTCAACATTCTTGTGCACAATGATTCGCTTCTTAAGCTTATCGCTCAG
CATGGACACGCCCAGCTCGATGATGCGATTGGCGTAGTGGGGTATGTTGA
CGAAGTGCGTCTCCTTGTGCCGCATCGGCGTCGAGTTCTGGATGCACTTG
ACAATGCTGCGCAGGTCGGTCAGAGACCAGAGGCTAACGAAGCCCATGTT
CATGCCACTCTCGTCGTTGATGTACACATATCCAGCCACCTGAGAATCCT
CATCATCCAGCAGTGCCTCGCAGACCAGACTGTGCACCCGCGCCATTTGC
ACCGAAGTGAACTTGTACGGATCGAACTTGGCGGCCACGGAGAAGATGAC
CTGACGTCCGGTGGAATCGCGCTGCGGCAGCGGCACCAGATAACCATTCT
CGAAGATCTCATTGATGGCCGGATCGTTGATGTCCAGCTGCTTGAACCAC
TGCGGGAACAGCTGCCGGATGGTCAGATAGCGCTCGAGCATTTCGCAGGC
GGATGGTACGGAGAACTTTTTGGTGCGCAAAAAACGCAGCAGGAAGACGG
TATCGGTGCGGCACTTGCGGATATGCGGATGCTTCTCGATCCACTCGCGG
AACTGGGCCAGCGCCTGCCGACGTATGTTCTCGTCCTCGTGCAGCTCC
BO10231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-PA | 1005 | CG10657-RA | 123..1002 | 898..19 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-RA | 1524 | CG10657-RA | 329..1208 | 898..19 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12492813..12493153 | 558..898 | 1690 | 99.7 | Plus |
3L | 28110227 | 3L | 12492458..12492753 | 268..563 | 1480 | 100 | Plus |
3L | 28110227 | 3L | 12492146..12492397 | 19..270 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:05:34 has no hits.
BO10231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:37 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-PA | 123..1005 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:20 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-PA | 123..1005 | 18..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:50 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 329..1214 | 13..898 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:49 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 329..1214 | 13..898 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:49 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12492140..12492397 | 13..270 | 98 | <- | Plus |
3L | 12492461..12492751 | 271..561 | 100 | <- | Plus |
3L | 12492817..12493153 | 562..898 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:50 Download gff for
BO10231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12485240..12485497 | 13..270 | 98 | <- | Plus |
arm_3L | 12485561..12485851 | 271..561 | 100 | <- | Plus |
arm_3L | 12485917..12486253 | 562..898 | 100 | | Plus |
BO10231.5prime Sequence
865 bp (815 high quality bases) assembled on 2006-04-19
> BO10231.5prime
GAAGTTATCAGTCGACATGCTTGAGACCGAGGTGCTGCAACAACCGAAGC
TGAGTGGACCGGCTGCCAGTAGCGGCGGCGACTATGACTATCCGTATGTC
TGCGGACTGAGTCCGGCAATGAAGCTGGTGGCCAAGGAGGAGCTGCACGA
GGACGAGAACATACGTCGGCAGGCGCTGGCCCAGTTCCGCGAGTGGATCG
AGAAGCATCCGCATATCCGCAAGTGCCGCACCGATACCGTCTTCCTGCTG
CGTTTTTTGCGCACCAAAAAGTTCTCCGTACCATCCGCCTGCGAAATGCT
CGAGCGCTATCTGACCATCCGGCAGCTGTTCCCGCAGTGGTTCAAGCAGC
TGGACATCAACGATCCGGCCATCAATGAGATCTTCGAGAATGGTTATCTG
GTGCCGCTGCCGCAGCGCGATTCCACCGGACGTCAGGTCATCTTCTCCGT
GGCCGCCAAGTTCGATCCGTACAAGTTCACTTCGGTGCAAATGGCGCGGG
TGCACAGTCTGGTCTGCGAGGCACTGCTGGATGATGAGGATTCTCAGGTG
GCTGGATATGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGT
TAGCCTCTGGTCTCTGACCGACCTGCGCAGCATTGTCAAGTGCATCCAGA
ACTCGACGCCGATGCGGCACAAGGAGACGCACTTCGTCAACATACCCCAC
TACGCCAATCGCATCATCGAGCTGGGCGTGTCCATGCTGAGCGATAAGCT
TAAGAAGCGAATCATTGTGCACAAGAATGTTGACATTTTGAAGACAAAGA
TCGATCCCGCCATCCTGCCCAAGGAATATGGTGGCACCGTGCCCATTGCC
GATATGATCGCCCAG
BO10231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-PA | 1005 | CG10657-RA | 1..849 | 17..865 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-RA | 1524 | CG10657-RA | 207..1055 | 17..865 | 4245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12492813..12493274 | 479..18 | 2295 | 99.8 | Minus |
3L | 28110227 | 3L | 12492458..12492753 | 769..474 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 12492299..12492397 | 865..767 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:28:21 has no hits.
BO10231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:38 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:21 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-PA | 1..849 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:38:52 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 207..1055 | 17..865 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:53 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 207..1055 | 17..865 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:53 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12492299..12492397 | 767..865 | 100 | <- | Minus |
3L | 12492461..12492751 | 476..766 | 100 | <- | Minus |
3L | 12492817..12493278 | 12..475 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:38:52 Download gff for
BO10231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12485399..12485497 | 767..865 | 100 | <- | Minus |
arm_3L | 12485561..12485851 | 476..766 | 100 | <- | Minus |
arm_3L | 12485917..12486378 | 12..475 | 99 | | Minus |
BO10231.complete Sequence
1036 bp (1036 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631686
> BO10231.complete
GAAGTTATCAGTCGACATGCTTGAGACCGAGGTGCTGCAACAACCGAAGC
TGAGTGGACCGGCTGCCAGTAGCGGCGGCGACTATGACTATCCGTATGTC
TGCGGACTGAGTCCGGCAATGAAGCTGGTGGCCAAGGAGGAGCTGCACGA
GGACGAGAACATACGTCGGCAGGCGCTGGCCCAGTTCCGCGAGTGGATCG
AGAAGCATCCGCATATCCGCAAGTGCCGCACCGATACCGTCTTCCTGCTG
CGTTTTTTGCGCACCAAAAAGTTCTCCGTACCATCCGCCTGCGAAATGCT
CGAGCGCTATCTGACCATCCGGCAGCTGTTCCCGCAGTGGTTCAAGCAGC
TGGACATCAACGATCCGGCCATCAATGAGATCTTCGAGAATGGTTATCTG
GTGCCGCTGCCGCAGCGCGATTCCACCGGACGTCAGGTCATCTTCTCCGT
GGCCGCCAAGTTCGATCCGTACAAGTTCACTTCGGTGCAAATGGCGCGGG
TGCACAGTCTGGTCTGCGAGGCACTGCTGGATGATGAGGATTCTCAGGTG
GCTGGATATGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGT
TAGCCTCTGGTCTCTGACCGACCTGCGCAGCATTGTCAAGTGCATCCAGA
ACTCGACGCCGATGCGGCACAAGGAGACGCACTTCGTCAACATACCCCAC
TACGCCAATCGCATCATCGAGCTGGGCGTGTCCATGCTGAGCGATAAGCT
TAAGAAGCGAATCATTGTGCACAAGAATGTTGACATTTTGAAGACAAAGA
TCGATCCCGCCATCCTGCCCAAGGAATATGGTGGCACCGTGCCCATTGCC
GATATGATCGCCCAGTTCAAACAGAAGTTGCAGCAACGCCGGGCGGCAAT
CCTTGCACTCGACGACATGCAGATCGAGGTGACCAAGGATGCGGCCAATT
TTGCTGGTAATGATATCGGCGACATCGATGCCGGTGTCGTGGGCAGTTTT
AGGAAACTGGAGGTGGACGCAAGCTTTCTAGACCAT
BO10231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-RA | 1005 | CG10657-PA | 1..1002 | 17..1018 | 5010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-RA | 1524 | CG10657-RA | 207..1208 | 17..1018 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12492813..12493274 | 479..18 | 2295 | 99.8 | Minus |
3L | 28110227 | 3L | 12492458..12492753 | 769..474 | 1480 | 100 | Minus |
3L | 28110227 | 3L | 12492146..12492397 | 1018..767 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:35:14 has no hits.
BO10231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:20 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 1..1005 | 17..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:06 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 189..1196 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:51 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 207..1208 | 17..1020 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:21 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 189..1196 | 17..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:04 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10657-RA | 207..1208 | 17..1020 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:04 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12492461..12492751 | 476..766 | 100 | <- | Minus |
3L | 12492144..12492397 | 767..1020 | 99 | <- | Minus |
3L | 12492817..12493274 | 17..475 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:51 Download gff for
BO10231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12485244..12485497 | 767..1020 | 99 | <- | Minus |
arm_3L | 12485561..12485851 | 476..766 | 100 | <- | Minus |
arm_3L | 12485917..12486374 | 17..475 | 99 | | Minus |
BO10231.pep Sequence
Translation from 16 to 1036
> BO10231.pep
MLETEVLQQPKLSGPAASSGGDYDYPYVCGLSPAMKLVAKEELHEDENIR
RQALAQFREWIEKHPHIRKCRTDTVFLLRFLRTKKFSVPSACEMLERYLT
IRQLFPQWFKQLDINDPAINEIFENGYLVPLPQRDSTGRQVIFSVAAKFD
PYKFTSVQMARVHSLVCEALLDDEDSQVAGYVYINDESGMNMGFVSLWSL
TDLRSIVKCIQNSTPMRHKETHFVNIPHYANRIIELGVSMLSDKLKKRII
VHKNVDILKTKIDPAILPKEYGGTVPIADMIAQFKQKLQQRRAAILALDD
MQIEVTKDAANFAGNDIGDIDAGVVGSFRKLEVDASFLDH
BO10231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10657-PA | 334 | CG10657-PA | 1..334 | 1..334 | 1728 | 100 | Plus |
Cralbp-PA | 324 | CG10546-PA | 10..324 | 30..334 | 550 | 36.8 | Plus |
CG30339-PA | 308 | CG30339-PA | 7..308 | 31..334 | 323 | 30.8 | Plus |
CG33966-PA | 310 | CG33966-PA | 2..310 | 26..334 | 307 | 29.8 | Plus |
CG33514-PA | 311 | CG33514-PA | 3..311 | 26..334 | 307 | 28.9 | Plus |