Clone BO10231 Report

Search the DGRC for BO10231

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG10657-RA
Protein status:BO10231.pep: validated full length
Sequenced Size:1036

Clone Sequence Records

BO10231.3prime Sequence

898 bp (848 high quality bases) assembled on 2006-04-19

> BO10231.3prime
ATGGTCTAGAAAGCTTGCGTCCACCTCCAGTTTCCTAAAACTGCCCACGA
CACCGGCATCGATGTCGCCGATATCATTACCAGCAAAATTGGCCGCATCC
TTGGTCACCTCGATCTGCATGTCGTCGAGTGCAAGGATTGCCGCCCGGCG
TTGCTGCAACTTCTGTTTGAACTGGGCGATCATATCGGCAATGGGCACGG
TGCCACCATATTCCTTGGGCAGGATGGCGGGATCGATCTTTGTCTTCAAA
ATGTCAACATTCTTGTGCACAATGATTCGCTTCTTAAGCTTATCGCTCAG
CATGGACACGCCCAGCTCGATGATGCGATTGGCGTAGTGGGGTATGTTGA
CGAAGTGCGTCTCCTTGTGCCGCATCGGCGTCGAGTTCTGGATGCACTTG
ACAATGCTGCGCAGGTCGGTCAGAGACCAGAGGCTAACGAAGCCCATGTT
CATGCCACTCTCGTCGTTGATGTACACATATCCAGCCACCTGAGAATCCT
CATCATCCAGCAGTGCCTCGCAGACCAGACTGTGCACCCGCGCCATTTGC
ACCGAAGTGAACTTGTACGGATCGAACTTGGCGGCCACGGAGAAGATGAC
CTGACGTCCGGTGGAATCGCGCTGCGGCAGCGGCACCAGATAACCATTCT
CGAAGATCTCATTGATGGCCGGATCGTTGATGTCCAGCTGCTTGAACCAC
TGCGGGAACAGCTGCCGGATGGTCAGATAGCGCTCGAGCATTTCGCAGGC
GGATGGTACGGAGAACTTTTTGGTGCGCAAAAAACGCAGCAGGAAGACGG
TATCGGTGCGGCACTTGCGGATATGCGGATGCTTCTCGATCCACTCGCGG
AACTGGGCCAGCGCCTGCCGACGTATGTTCTCGTCCTCGTGCAGCTCC

BO10231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-PA 1005 CG10657-RA 123..1002 898..19 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-RA 1524 CG10657-RA 329..1208 898..19 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12492813..12493153 558..898 1690 99.7 Plus
3L 28110227 3L 12492458..12492753 268..563 1480 100 Plus
3L 28110227 3L 12492146..12492397 19..270 1260 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:05:34 has no hits.

BO10231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:37 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-PA 123..1005 18..898 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:20 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-PA 123..1005 18..898 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:21:50 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 329..1214 13..898 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:08:49 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 329..1214 13..898 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:08:49 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12492140..12492397 13..270 98 <- Plus
3L 12492461..12492751 271..561 100 <- Plus
3L 12492817..12493153 562..898 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:21:50 Download gff for BO10231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12485240..12485497 13..270 98 <- Plus
arm_3L 12485561..12485851 271..561 100 <- Plus
arm_3L 12485917..12486253 562..898 100   Plus

BO10231.5prime Sequence

865 bp (815 high quality bases) assembled on 2006-04-19

> BO10231.5prime
GAAGTTATCAGTCGACATGCTTGAGACCGAGGTGCTGCAACAACCGAAGC
TGAGTGGACCGGCTGCCAGTAGCGGCGGCGACTATGACTATCCGTATGTC
TGCGGACTGAGTCCGGCAATGAAGCTGGTGGCCAAGGAGGAGCTGCACGA
GGACGAGAACATACGTCGGCAGGCGCTGGCCCAGTTCCGCGAGTGGATCG
AGAAGCATCCGCATATCCGCAAGTGCCGCACCGATACCGTCTTCCTGCTG
CGTTTTTTGCGCACCAAAAAGTTCTCCGTACCATCCGCCTGCGAAATGCT
CGAGCGCTATCTGACCATCCGGCAGCTGTTCCCGCAGTGGTTCAAGCAGC
TGGACATCAACGATCCGGCCATCAATGAGATCTTCGAGAATGGTTATCTG
GTGCCGCTGCCGCAGCGCGATTCCACCGGACGTCAGGTCATCTTCTCCGT
GGCCGCCAAGTTCGATCCGTACAAGTTCACTTCGGTGCAAATGGCGCGGG
TGCACAGTCTGGTCTGCGAGGCACTGCTGGATGATGAGGATTCTCAGGTG
GCTGGATATGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGT
TAGCCTCTGGTCTCTGACCGACCTGCGCAGCATTGTCAAGTGCATCCAGA
ACTCGACGCCGATGCGGCACAAGGAGACGCACTTCGTCAACATACCCCAC
TACGCCAATCGCATCATCGAGCTGGGCGTGTCCATGCTGAGCGATAAGCT
TAAGAAGCGAATCATTGTGCACAAGAATGTTGACATTTTGAAGACAAAGA
TCGATCCCGCCATCCTGCCCAAGGAATATGGTGGCACCGTGCCCATTGCC
GATATGATCGCCCAG

BO10231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-PA 1005 CG10657-RA 1..849 17..865 4245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-RA 1524 CG10657-RA 207..1055 17..865 4245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12492813..12493274 479..18 2295 99.8 Minus
3L 28110227 3L 12492458..12492753 769..474 1480 100 Minus
3L 28110227 3L 12492299..12492397 865..767 495 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:28:21 has no hits.

BO10231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:38 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:21 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-PA 1..849 17..865 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:38:52 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 207..1055 17..865 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:53 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 207..1055 17..865 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:53 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12492299..12492397 767..865 100 <- Minus
3L 12492461..12492751 476..766 100 <- Minus
3L 12492817..12493278 12..475 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:38:52 Download gff for BO10231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12485399..12485497 767..865 100 <- Minus
arm_3L 12485561..12485851 476..766 100 <- Minus
arm_3L 12485917..12486378 12..475 99   Minus

BO10231.complete Sequence

1036 bp (1036 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631686

> BO10231.complete
GAAGTTATCAGTCGACATGCTTGAGACCGAGGTGCTGCAACAACCGAAGC
TGAGTGGACCGGCTGCCAGTAGCGGCGGCGACTATGACTATCCGTATGTC
TGCGGACTGAGTCCGGCAATGAAGCTGGTGGCCAAGGAGGAGCTGCACGA
GGACGAGAACATACGTCGGCAGGCGCTGGCCCAGTTCCGCGAGTGGATCG
AGAAGCATCCGCATATCCGCAAGTGCCGCACCGATACCGTCTTCCTGCTG
CGTTTTTTGCGCACCAAAAAGTTCTCCGTACCATCCGCCTGCGAAATGCT
CGAGCGCTATCTGACCATCCGGCAGCTGTTCCCGCAGTGGTTCAAGCAGC
TGGACATCAACGATCCGGCCATCAATGAGATCTTCGAGAATGGTTATCTG
GTGCCGCTGCCGCAGCGCGATTCCACCGGACGTCAGGTCATCTTCTCCGT
GGCCGCCAAGTTCGATCCGTACAAGTTCACTTCGGTGCAAATGGCGCGGG
TGCACAGTCTGGTCTGCGAGGCACTGCTGGATGATGAGGATTCTCAGGTG
GCTGGATATGTGTACATCAACGACGAGAGTGGCATGAACATGGGCTTCGT
TAGCCTCTGGTCTCTGACCGACCTGCGCAGCATTGTCAAGTGCATCCAGA
ACTCGACGCCGATGCGGCACAAGGAGACGCACTTCGTCAACATACCCCAC
TACGCCAATCGCATCATCGAGCTGGGCGTGTCCATGCTGAGCGATAAGCT
TAAGAAGCGAATCATTGTGCACAAGAATGTTGACATTTTGAAGACAAAGA
TCGATCCCGCCATCCTGCCCAAGGAATATGGTGGCACCGTGCCCATTGCC
GATATGATCGCCCAGTTCAAACAGAAGTTGCAGCAACGCCGGGCGGCAAT
CCTTGCACTCGACGACATGCAGATCGAGGTGACCAAGGATGCGGCCAATT
TTGCTGGTAATGATATCGGCGACATCGATGCCGGTGTCGTGGGCAGTTTT
AGGAAACTGGAGGTGGACGCAAGCTTTCTAGACCAT

BO10231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-RA 1005 CG10657-PA 1..1002 17..1018 5010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:35:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-RA 1524 CG10657-RA 207..1208 17..1018 5010 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:35:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12492813..12493274 479..18 2295 99.8 Minus
3L 28110227 3L 12492458..12492753 769..474 1480 100 Minus
3L 28110227 3L 12492146..12492397 1018..767 1260 100 Minus
Blast to na_te.dros performed on 2014-11-26 22:35:14 has no hits.

BO10231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:20 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 1..1005 17..1019 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:06 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 189..1196 17..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:02:51 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 207..1208 17..1020 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:21 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 189..1196 17..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:05:04 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
CG10657-RA 207..1208 17..1020 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:05:04 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12492461..12492751 476..766 100 <- Minus
3L 12492144..12492397 767..1020 99 <- Minus
3L 12492817..12493274 17..475 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:02:51 Download gff for BO10231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12485244..12485497 767..1020 99 <- Minus
arm_3L 12485561..12485851 476..766 100 <- Minus
arm_3L 12485917..12486374 17..475 99   Minus

BO10231.pep Sequence

Translation from 16 to 1036

> BO10231.pep
MLETEVLQQPKLSGPAASSGGDYDYPYVCGLSPAMKLVAKEELHEDENIR
RQALAQFREWIEKHPHIRKCRTDTVFLLRFLRTKKFSVPSACEMLERYLT
IRQLFPQWFKQLDINDPAINEIFENGYLVPLPQRDSTGRQVIFSVAAKFD
PYKFTSVQMARVHSLVCEALLDDEDSQVAGYVYINDESGMNMGFVSLWSL
TDLRSIVKCIQNSTPMRHKETHFVNIPHYANRIIELGVSMLSDKLKKRII
VHKNVDILKTKIDPAILPKEYGGTVPIADMIAQFKQKLQQRRAAILALDD
MQIEVTKDAANFAGNDIGDIDAGVVGSFRKLEVDASFLDH

BO10231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10657-PA 334 CG10657-PA 1..334 1..334 1728 100 Plus
Cralbp-PA 324 CG10546-PA 10..324 30..334 550 36.8 Plus
CG30339-PA 308 CG30339-PA 7..308 31..334 323 30.8 Plus
CG33966-PA 310 CG33966-PA 2..310 26..334 307 29.8 Plus
CG33514-PA 311 CG33514-PA 3..311 26..334 307 28.9 Plus