Clone Sequence Records
BO10233.3prime Sequence
886 bp (799 high quality bases) assembled on 2006-04-19
> BO10233.3prime
ATGGTCTAGAAAGCTTGCCCTGCCATTTCGTTTCGTCTTTCGCTTGAGCA
GATTAAAGTCTCCGTACTGAATGTGATTGTCGGTCAGGAATGGCACATAG
AAGGCACGTAACACTTTGTGCGACTTCTCCGGAATGAGGAAGGGCAGACT
CTTCATCACCGACCAATCTTTGGATCGTTTTGAATAATTGGGTTCCAGAG
CCGTATACTTGCCTTCATCAAAGTCGACGAGGAAATCGCAACGGTCGTAG
TCAAAGTACATGTGCTCATTTTCCTGGTTGAGATCGTTAAAATACGGTTG
CACTACCTTAGTAGCATTTTGACCTTCGTCATAGTACGCGGGCAGCATGC
CTCGGAATTCGGATTTCAGAAAACGCAGCCGGAAGTTTTTGGCGGGAAAG
AAGAAGCTGCCCGGATATCGATGCCAATCTTTGCCAATACACACGTTGTA
TATTACATCCGGGTCGTACTGCGGTGTCGCCTTAAACTGGTTCAGTTCCA
GCATCAAATCCATCGGAGCATGGTAGTTCCTATACAGGGCAAACACCCTG
GAAAGTCCCAACAATGTGCTGGTCACCATTACCAAGATGGCAATAAACAT
GCTGTGGTCCAGATAATGAACTCCCGCCTTAATTTTGAAGACCACCGATT
TCATACGGAAGAATATGCGCTGATACACATCCACAGTGATGGCTCCGCAN
AGCGAGATTAAAGGATATATGGGAAACAGAAAGCGCTCTTCCTTGTGCGG
TTGGGCAAAAAAGACGAGAAGCCACAGGTACAGGGGAGCCAGCGAGATGT
AGTGGGGGAAATTTAACGTCGACTTTGATTTGGCTGGCACAATCAAATAG
TCTATGACCAGCATTATGGGGTAGTTGAAGTGCCAG
BO10233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-PA | 1872 | CG11851-RA | 1018..1869 | 870..19 | 4241 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-RA | 2363 | CG11851-RA | 1116..1982 | 886..19 | 4304 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25222871..25223737 | 886..19 | 4279 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-06 16:37:36 has no hits.
BO10233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:42 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-PA | 1003..1872 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:25 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-PA | 1003..1872 | 15..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:51 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 1116..1987 | 14..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:18:16 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 1116..1987 | 14..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:18:16 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25222871..25223742 | 14..886 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:51 Download gff for
BO10233.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21048593..21049464 | 14..886 | 99 | | Minus |
BO10233.5prime Sequence
835 bp (805 high quality bases) assembled on 2006-04-19
> BO10233.5prime
GAAGTTATCAGTCGACATGGCGCCTCCGGCTGCTCGCGCTCGCTACATAG
CCAACAAGGCGGACAACCAGATTCTCTCAAAGAAACCGCCCAAAAGACCG
GGCCTAAATGGCAACAACAAGACGAAGGAAGCCACACCGGCCGGCAAAAA
AAAGGATAAGGATGCTAAAAAGCGCAACCAACCCACAAGTGGTGGTCAAG
AGAAGGGGCTTCCCAACCCCATAATGCCCAGTGTTCAGACCGCCTTCAAG
ACCTTCGTGAGCGCCCGGTTGTGCAGCGCCATTTGGGCGTACATAGCCGA
CTGCGACGAGACGTTCAACTACTGGGAGCCGCTGCACTACATCATTAATG
GCCATGGACTCCAGACGTGGGAGTACAGCCCGCAGTTTGGACTCCGATCG
TACACCTACCTATTGCTGCAGGGCGTGCCCGGATACTTTTACCAAAAGTT
GTTCAATCCCAGTCCCATACTCATCTTCTACATGGTGCGATGTATGTTGG
GTTTCGGTTGTGCCGTAATGGAGCGATATATGTACAAGTCGATTTGTCAA
GAGTTTGGAATTCACATCGGTCGTCTGTGGCTGATATTCCAGCTCTTCAG
TGTGGGCATGTTTGTGTCTAGCACCGCTCTACTGCCATCCTCCTTTTCCA
TGTACTTTGGCTGTGCTGCCCTGGCCGCGTGGTGGCAACAAAATTACTGT
TTTGCCATATTCCTGACAGCAATATCCGCTTTGCTTGGTTGGCCATTTGC
TGCGCTTATTGGCATACCGCTGGTGCTGGAGATGCTTTTAAGGCAGCGTG
ATTGGAAGACCTTTGTTCAGTGGACACTGATATCG
BO10233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-PA | 1872 | CG11851-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-RA | 2363 | CG11851-RA | 114..932 | 17..835 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25221917..25222282 | 174..539 | 1830 | 100 | Plus |
| 3R | 32079331 | 3R | 25222335..25222632 | 538..835 | 1490 | 100 | Plus |
| 3R | 32079331 | 3R | 25221702..25221859 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:20:26 has no hits.
BO10233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:43 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:27 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:37 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 104..932 | 10..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:22 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 104..932 | 10..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:22 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25221692..25221859 | 10..174 | 97 | -> | Plus |
| 3R | 25221918..25222280 | 175..537 | 100 | -> | Plus |
| 3R | 25222335..25222632 | 538..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:37 Download gff for
BO10233.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21047414..21047581 | 10..174 | 97 | -> | Plus |
| arm_3R | 21047640..21048002 | 175..537 | 100 | -> | Plus |
| arm_3R | 21048057..21048354 | 538..835 | 100 | | Plus |
BO10233.complete Sequence
1903 bp (1903 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631687
> BO10233.complete
GAAGTTATCAGTCGACATGGCGCCTCCGGCTGCTCGCGCTCGCTACATAG
CCAACAAGGCGGACAACCAGATTCTCTCAAAGAAACCGCCCAAAAGACCG
GGCCTAAATGGCAACAACAAGACGAAGGAAGCCACACCGGCCGGCAAAAA
AAAGGATAAGGATGCTAAAAAGCGCAACCAACCCACAAGTGGTGGTCAAG
AGAAGGGGCTTCCCAACCCCATAATGCCCAGTGTTCAGACCGCCTTCAAG
ACCTTCGTGAGCGCCCGGTTGTGCAGCGCCATTTGGGCGTACATAGCCGA
CTGCGACGAGACGTTCAACTACTGGGAGCCGCTGCACTACATCATTAATG
GCCATGGACTCCAGACGTGGGAGTACAGCCCGCAGTTTGGACTCCGATCG
TACACCTACCTATTGCTGCAGGGCGTGCCCGGATACTTTTACCAAAAGTT
GTTCAATCCCAGTCCCATACTCATCTTCTACATGGTGCGATGTATGTTGG
GTTTCGGTTGTGCCGTAATGGAGCGATATATGTACAAGTCGATTTGTCAA
GAGTTTGGAATTCACATCGGTCGTCTGTGGCTGATATTCCAGCTCTTCAG
TGTGGGCATGTTTGTGTCTAGCACCGCTCTACTGCCATCCTCCTTTTCCA
TGTACTTTGGCTGTGCTGCCCTGGCCGCGTGGTGGCAACAAAATTACTGT
TTTGCCATATTCCTGACAGCAATATCCGCTTTGCTTGGTTGGCCATTTGC
TGCGCTTATTGGCATACCGCTGGTGCTGGAGATGCTTTTAAGGCAGCGTG
ATTGGAAGACCTTTGTTCAGTGGACACTGATATCGGGCGCCACGGTTGCC
ATTCCCATGATTGCAATTGATACCAGCTATTTTGGCAAACTGACATTTGC
TCCTCTAAATATTGTTTGGTACAATGTGTTCACCAGTCACGGACCAAACA
TATTTGGTACGGAACCACTCAGTTACTACATTATCAATGGTTTCCTTAAC
TTTAATATTATTTGGCTCCTGGCACTTCAACTACCCATAATGCTGGTCAT
AGACTATTTGATTGTGCCAGCCAAATCAAAGTCGACGTTAAATTTCCCCC
ACTACATCTCGCTGGCTCCCCTGTACCTGTGGCTTCTCGTCTTTTTTGCC
CAACCGCACAAGGAAGAGCGCTTTCTGTTTCCCATATATCCTTTAATCTC
GCTTTGCGGAGCCATCACTGTGGATGTGTATCAGCGCATATTCTTCCGTA
TGAAATCGGTGGTCTTCAAAATTAAGGCGGGAGTTCATTATCTGGACCAC
AGCATGTTTATTGCCATCTTGGTAATGGTGACCAGCACATTGTTGGGACT
TTCCAGGGTGTTTGCCCTGTATAGGAACTACCATGCTCCGATGGATTTGA
TGCTGGAACTGAACCAGTTTAAGGCGACACCGCAGTACGACCCGGATGTA
ATATACAACGTGTGTATTGGCAAAGATTGGCATCGATATCCGGGCAGCTT
CTTCTTTCCCGCCAAAAACTTCCGGCTGCGTTTTCTGAAATCCGAATTCC
GAGGCATGCTGCCCGCGTACTATGACGAAGGTCAAAATGCTACTAAGGTA
GTGCAACCGTATTTTAACGATCTCAACCAGGAAAATGAGCACATGTACTT
TGACTACGACCGTTGCGATTTCCTCGTCGACTTTGATGAAGGCAAGTATA
CGGCTCTGGAACCCAATTATTCAAAACGATCCAAAGATTGGTCGGTGATG
AAGAGTCTGCCCTTCCTCATTCCGGAGAAGTCGCACAAAGTGTTACGTGC
CTTCTATGTGCCATTCCTGACCGACAATCACATTCAGTACGGAGACTTTA
ATCTGCTCAAGCGAAAGACGAAACGAAATGGCAGGGCAAGCTTTCTAGAC
CAT
BO10233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-RA | 1872 | CG11851-PA | 1..1869 | 17..1885 | 9345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-RA | 2363 | CG11851-RA | 114..1982 | 17..1885 | 9345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25222867..25223737 | 1015..1885 | 4355 | 100 | Plus |
| 3R | 32079331 | 3R | 25222335..25222812 | 538..1015 | 2390 | 100 | Plus |
| 3R | 32079331 | 3R | 25221917..25222282 | 174..539 | 1830 | 100 | Plus |
| 3R | 32079331 | 3R | 25221702..25221859 | 17..174 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:04 has no hits.
BO10233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:25 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 1..1872 | 17..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:16:00 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 100..1983 | 10..1890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:00 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 114..1982 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:25 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 100..1983 | 10..1890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:36 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11851-RA | 114..1982 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:36 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25221702..25221859 | 17..174 | 100 | -> | Plus |
| 3R | 25221918..25222280 | 175..537 | 100 | -> | Plus |
| 3R | 25222335..25222812 | 538..1015 | 100 | -> | Plus |
| 3R | 25222868..25223737 | 1016..1887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:00 Download gff for
BO10233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21047424..21047581 | 17..174 | 100 | -> | Plus |
| arm_3R | 21047640..21048002 | 175..537 | 100 | -> | Plus |
| arm_3R | 21048057..21048534 | 538..1015 | 100 | -> | Plus |
| arm_3R | 21048590..21049459 | 1016..1887 | 99 | | Plus |
BO10233.pep Sequence
Translation from 16 to 1903
> BO10233.pep
MAPPAARARYIANKADNQILSKKPPKRPGLNGNNKTKEATPAGKKKDKDA
KKRNQPTSGGQEKGLPNPIMPSVQTAFKTFVSARLCSAIWAYIADCDETF
NYWEPLHYIINGHGLQTWEYSPQFGLRSYTYLLLQGVPGYFYQKLFNPSP
ILIFYMVRCMLGFGCAVMERYMYKSICQEFGIHIGRLWLIFQLFSVGMFV
SSTALLPSSFSMYFGCAALAAWWQQNYCFAIFLTAISALLGWPFAALIGI
PLVLEMLLRQRDWKTFVQWTLISGATVAIPMIAIDTSYFGKLTFAPLNIV
WYNVFTSHGPNIFGTEPLSYYIINGFLNFNIIWLLALQLPIMLVIDYLIV
PAKSKSTLNFPHYISLAPLYLWLLVFFAQPHKEERFLFPIYPLISLCGAI
TVDVYQRIFFRMKSVVFKIKAGVHYLDHSMFIAILVMVTSTLLGLSRVFA
LYRNYHAPMDLMLELNQFKATPQYDPDVIYNVCIGKDWHRYPGSFFFPAK
NFRLRFLKSEFRGMLPAYYDEGQNATKVVQPYFNDLNQENEHMYFDYDRC
DFLVDFDEGKYTALEPNYSKRSKDWSVMKSLPFLIPEKSHKVLRAFYVPF
LTDNHIQYGDFNLLKRKTKRNGRASFLDH
BO10233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11851-PA | 623 | CG11851-PA | 1..623 | 1..623 | 3351 | 100 | Plus |
| CG12006-PB | 531 | CG12006-PB | 30..329 | 102..416 | 164 | 26.4 | Plus |
| CG12006-PA | 561 | CG12006-PA | 30..329 | 102..416 | 164 | 26.4 | Plus |
