Clone Sequence Records
BO10238.3prime Sequence
949 bp (771 high quality bases) assembled on 2006-04-19
> BO10238.3prime
ATGGTCTAGAAAGCTTGCGCGCAGATTTAGCTGCCTCTGCTGGCCACGAT
CGTAGAATAAAAGATAGGCGGGGACGCTCAACACCTCGTCGATGCTCACC
TCCCGCACAATTGTATCCGATGTGTAGTACCACCGATGTGCGTTCCGCAA
CGAGCCACGCCTGTAGGTTACAAAGTGACCGCTGTTTGCCTCCCCGGAGT
GCACCACCACGGCCAGAAGCCGGTAAAGATTCTTGGGGAACATCGTGCCA
AAGCCCTCGCCACCACCAACGCCATTGTTCATCGGCAGGCTGGAGGAATA
CAGCGACATTGTCGAGCCCCAGGGAGTGCCAGCCTGGCTATTGAGATGCG
GCTGCACGAAGCTGTAGGGCGCCATGGAGAGGCTCTCGGGGAAGTGTACA
TAGTCCTTCCGCTTGCACACCTGTCCAGTTGGCAGCCACACCGTCCGCGC
CACATGGATGCACAGGCAGGCCGGTAGTTTAGCGAACGTAACCGATTTGG
TGTGCGTGGTGGTCTCGTTGCAGGAGTCACACTTGACATCGCTCAGATCC
TCCGATGTGATATACTCGCTAAGCAAGTGGCCCAAACTCAAGCCAGTTCT
GCGTTGCGGCGGCAGATTTAGCGTTATGCTGTCGAACTTATCGTACCGAA
CGGCCGACTTGGAGCCGCAGCCATTGCACACGATCTGTGCGCCCATGGCG
CCCTGAAACGGATGCGCCACTTGGCTGGGCATCATGTTGGACCAGATGGA
CACCCGACCTGGTCCGCGATGCAGGCGCTCTAGCGATCGACAGGAGCTGG
ACACCCGGCGATTCAGACCCTCATCCTGCTGCTGTTGGGATTGTGGAAGT
CGCGGTCGCGACGAACGCTCGCCGCCCAACATAGGCGTAGCCAAGGAATC
GGGATTGCTGACGAGCGGAAAGCCAAAGGGTGTCCCTGGCGAAACGGCA
BO10238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-PA | 1677 | CG3016-RA | 744..1674 | 949..19 | 4630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 16:37:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 904..1834 | 949..19 | 4640 | 99.9 | Minus |
| CG3016-RA | 2436 | CG3016-RA | 1073..2003 | 949..19 | 4640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 16:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878045..5878661 | 333..949 | 3070 | 99.8 | Plus |
| X | 23542271 | X | 5877604..5877808 | 132..336 | 1025 | 100 | Plus |
| X | 23542271 | X | 5877433..5877548 | 19..134 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 16:37:48 has no hits.
BO10238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:50 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-PA | 745..1677 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:36 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-PA | 745..1677 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 10:25:54 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 1074..2003 | 19..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 19:18:19 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 1074..2003 | 19..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 19:18:19 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5877433..5877547 | 19..133 | 100 | <- | Plus |
| X | 5877606..5877805 | 134..333 | 100 | <- | Plus |
| X | 5878046..5878660 | 334..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 10:25:54 Download gff for
BO10238.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5771466..5771580 | 19..133 | 100 | <- | Plus |
| arm_X | 5771639..5771838 | 134..333 | 100 | <- | Plus |
| arm_X | 5772079..5772693 | 334..948 | 99 | | Plus |
BO10238.5prime Sequence
946 bp (866 high quality bases) assembled on 2006-04-19
> BO10238.5prime
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATG
AGAGCACCAGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGAT
TCGCCTGCCTCTGTTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGT
GCTTCTGGATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCA
GCAATCCGGATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCG
CGACCGCGACTTCCACAATCCAACAGCAGCAGGATGAGGGTCTGAATCGG
CGGGTGTCCAGCTCCTGTCGATCGCTAGAGCGCCTGCATCGCGGAC
BO10238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-PA | 1677 | CG3016-RA | 1..855 | 17..871 | 4275 | 100 | Plus |
| CG3016-PA | 1677 | CG3016-RA | 855..931 | 870..946 | 360 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 160..1091 | 16..946 | 4620 | 99.8 | Plus |
| CG3016-RA | 2436 | CG3016-RA | 329..1260 | 16..946 | 4620 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878474..5879323 | 946..98 | 4185 | 99.8 | Minus |
| X | 23542271 | X | 5879375..5879459 | 100..16 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:04:57 has no hits.
BO10238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:51 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-PA | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:38 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-PA | 1..931 | 17..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:34:22 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 326..1260 | 10..946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:39:10 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 326..1260 | 10..946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:39:10 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5878474..5879322 | 99..946 | 99 | <- | Minus |
| X | 5879377..5879462 | 10..98 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:34:22 Download gff for
BO10238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5772507..5773355 | 99..946 | 99 | <- | Minus |
| arm_X | 5773410..5773495 | 10..98 | 96 | | Minus |
BO10238.complete Sequence
1708 bp (1708 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631688
> BO10238.complete
GAAGTTATCAGTCGACATGGAGAGCGAGAAGATTCTAATGGCCGCCGGAG
TGACGGTAGCCGCCGTAGTCGGAGCCTTCGTTTTCTGGGGTCCTTCGGGT
TCCCGTTTGCGTCAACGACGCGGCCAAATTGCCGGTCTCCACAACTTTGG
ACTGACCTGCTTCCTAAACACCCTGCTACAGGCGATGGCCGCCTGTCCCC
AGTTCATTGCCTGGCTGCAATTGTACAACAACGCCTCGCCGGATCGAAAA
AGCTTAATTACGTCGATGTTAAACACTCTGGAAGTGGTCAATGGCACCCA
TGCCACTCTGCGCGGCGATCCCTATTCACCGGGAGCCGTTCTCCGGGCTC
TGAATGCCCTGGGCTGGGTGATTCCACAGGAGGAGCACGACGCCCACGAG
CTGTTCCACGTGCTATTGACCTGCCTGGAGGAGGAGGCCATACGACCACA
GCCCCTCGGCTGTCTGTCGGATGCTCTGCCCACGGATAACGATGATAACA
GCAGCTTGGCAGGCACAGCAACGCCAGTAGGGGGCTTTCGATCATTTAGC
TCCATGGCAGCGGGACTGGGAGCCAGCCAGAGGATCGGGGATCAACCGAA
CCGGCCCTCCAGTGCCATGCTCACTGATTTCTTAAACATGGAGTATGATG
AGAGCACCAGTTTGCAGCGATTGGTGCGTTCCGAGGCCCACACACCGGAT
TCGCCTGCCTCTGTTTGCGAACGCGACGGAAACGATCGCCTGGGATCCGT
GCTTCTGGATGCCGTTTCGCCAGGGACACCCTTTGGCTTTCCGCTCGTCA
GCAATCCGGATTCCTTGGCTACGCCTATGTTGGGCGGCGAGCGTTCGTCG
CGACCGCGACTTCCACAATCCCAACAGCAGCAGGATGAGGGTCTGAATCG
CCGGGTGTCCAGCTCCTGTCGATCGCTAGAGCGCCTGCATCGCGGACCAG
GTCGGGTGTCCATCTGGTCCAACATGATGCCCAGCCAAGTGGCGCATCCG
TTTCAGGGCGCCATGGGCGCACAGATCGTGTGCAATGGCTGCGGCTCCAA
GTCGGCCGTTCGGTACGATAAGTTCGACAGCATAACGCTAAATCTGCCGC
CGCAACGCAGAACTGGCTTGAGTTTGGGCCACTTGCTTAGCGAGTATATC
ACATCGGAGGATCTGAGCGATGTCAAGTGTGACTCCTGCAACGAGACCAC
CACGCACACCAAATCGGTTACGTTCGCTAAACTACCGGCCTGCCTGTGCA
TCCATGTGGCGCGGACGGTGTGGCTGCCAACTGGACAGGTGTGCAAGCGG
AAGGACTATGTACACTTCCCCGAGAGCCTCTCCATGGCGCCCTACAGCTT
CGTGCAGCCGCATCTCAATAGCCAGGCTGGCACTCCCTGGGGCTCGACAA
TGTCGCTGTATTCCTCCAGCCTGCCGATGAACAATGGCGTTGGTGGTGGC
GAGGGCTTTGGCACGATGTTCCCCAAGAATCTTTACCGGCTTCTGGCCGT
GGTGGTGCACTCCGGGGAGGCAAACAGCGGTCACTTTGTAACCTACAGGC
GTGGCTCGTTGCGGAACGCACATCGGTGGTACTACACATCGGATACAATT
GTGCGGGAGGTGAGCATCGACGAGGTGTTGAGCGTCCCCGCCTATCTTTT
ATTCTACGATCGTGGCCAGCAGAGGCAGCTAAATCTGCGCGCAAGCTTTC
TAGACCAT
BO10238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 1677 | CG3016-PB | 1..1674 | 17..1690 | 8370 | 100 | Plus |
| CG3016-RA | 1677 | CG3016-PA | 1..1674 | 17..1690 | 8370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-RB | 2267 | CG3016-RB | 160..1834 | 16..1690 | 8375 | 100 | Plus |
| CG3016-RA | 2436 | CG3016-RA | 329..2003 | 16..1690 | 8375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5878045..5879323 | 1376..98 | 6395 | 100 | Minus |
| X | 23542271 | X | 5877604..5877808 | 1577..1373 | 1025 | 100 | Minus |
| X | 23542271 | X | 5877433..5877548 | 1690..1575 | 580 | 100 | Minus |
| X | 23542271 | X | 5879375..5879459 | 100..16 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:17:12 has no hits.
BO10238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:13 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 1..1677 | 17..1691 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:48 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 372..2049 | 10..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:20:18 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 330..2003 | 17..1692 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:13 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 372..2049 | 10..1690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:14:53 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3016-RA | 330..2003 | 17..1692 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:14:53 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5877431..5877547 | 1576..1692 | 98 | <- | Minus |
| X | 5877606..5877805 | 1376..1575 | 100 | <- | Minus |
| X | 5878046..5879322 | 99..1375 | 100 | <- | Minus |
| X | 5879377..5879458 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:20:18 Download gff for
BO10238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5771639..5771838 | 1376..1575 | 100 | <- | Minus |
| arm_X | 5771464..5771580 | 1576..1692 | 98 | <- | Minus |
| arm_X | 5772079..5773355 | 99..1375 | 100 | <- | Minus |
| arm_X | 5773410..5773491 | 17..98 | 100 | | Minus |
BO10238.pep Sequence
Translation from 16 to 1708
> BO10238.pep
MESEKILMAAGVTVAAVVGAFVFWGPSGSRLRQRRGQIAGLHNFGLTCFL
NTLLQAMAACPQFIAWLQLYNNASPDRKSLITSMLNTLEVVNGTHATLRG
DPYSPGAVLRALNALGWVIPQEEHDAHELFHVLLTCLEEEAIRPQPLGCL
SDALPTDNDDNSSLAGTATPVGGFRSFSSMAAGLGASQRIGDQPNRPSSA
MLTDFLNMEYDESTSLQRLVRSEAHTPDSPASVCERDGNDRLGSVLLDAV
SPGTPFGFPLVSNPDSLATPMLGGERSSRPRLPQSQQQQDEGLNRRVSSS
CRSLERLHRGPGRVSIWSNMMPSQVAHPFQGAMGAQIVCNGCGSKSAVRY
DKFDSITLNLPPQRRTGLSLGHLLSEYITSEDLSDVKCDSCNETTTHTKS
VTFAKLPACLCIHVARTVWLPTGQVCKRKDYVHFPESLSMAPYSFVQPHL
NSQAGTPWGSTMSLYSSSLPMNNGVGGGEGFGTMFPKNLYRLLAVVVHSG
EANSGHFVTYRRGSLRNAHRWYYTSDTIVREVSIDEVLSVPAYLLFYDRG
QQRQLNLRASFLDH
BO10238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3016-PB | 558 | CG3016-PB | 1..558 | 1..558 | 2933 | 100 | Plus |
| CG3016-PA | 558 | CG3016-PA | 1..558 | 1..558 | 2933 | 100 | Plus |
| Ubpy-PB | 367 | CG5798-PB | 167..357 | 323..547 | 208 | 27.2 | Plus |
| Ubpy-PA | 896 | CG5798-PA | 696..886 | 323..547 | 208 | 27.2 | Plus |
