Clone Sequence Records
BO10239.3prime Sequence
947 bp (856 high quality bases) assembled on 2006-04-19
> BO10239.3prime
ATGGTCTAGAAAGCTTGCAGGTATCCTTAAACAGTGAACCTTCTGATGTG
ATGTGTTGGCCCCGGAACAAAAGCAATCGAAACGATACTCACGCACAAAG
GACTGGGTAAGTCGCAGAGACAAGGTGCGACAGCGGTGCCGGCACTCACT
GGTGGGTCGCAGGATGATGAACCGCGTGCCTACCGCCTGGTGTATATAGA
CATTGGGGCATTCCGTTTCCGGCAATGTGTAGGCCGGCGCCTGGGCAGTA
TCGATGGCCACATAACGCTCCAGGGCCACGCCCATGCTGGGCAATCGCGT
TGGCCGGGCGAAAATGGGACGCAGGAGTCGCGCGGGCAGCATGCGATTGC
AGCGCCAAAGATTGTGCGCCTGCTGGGTCCAGCTGCTGTTGAACTGCCCA
AAGAGATCCTCAAGATTGTGCACATCCTGGTTGGTCGAGTGCACCCGATA
CGCGTCGCGCTGGAAGATCTGATGATTGCTAGCGTAGATGTTGTAGAAGT
GGCTCAAGTCAATGGACTCCTGCTGGTTGCTCCTAAAGGCGATGGGCGAT
CCCTCCGGCTGATGGCACTTGTGGTTCTGATGGTACTCCAGCGGATGACC
ATTTGCACACTCCTCGCCCTCCAGCCAGACGGTCTCCACTTCGGCACACG
GTCCGCAGCTCAGATCCTCTAGCTGAAAAAACGGATTGCCCATCAGGCAG
GACTCGTCGTAGAGTTCGGTAAGCTGTGGGAATCGTTGGATCAGCGGCAT
GGTCATCCGCCGCCACATGCGCATCCCGGGATAGACCATGGCCTGGACAA
CGCGCTCCTGATGTCCGCCGGTGGAGCTGGTTACCTCATAACGGTAGGCG
GCCACGCAGAGCGACACCACCGTGAGGTAGAACAGCCAGCAGAGGATCTG
TCGTCGTCGGTCCAGCAGATGATGCAGTACCTCAAGCTTGAGGTAGG
BO10239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-PA | 1143 | CG4558-RA | 212..1140 | 947..19 | 4645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-RA | 2115 | CG4558-RA | 429..1357 | 947..19 | 4645 | 100 | Minus |
| CG4558-RB | 1868 | CG4558-RB | 429..1283 | 947..93 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6850198..6851126 | 947..19 | 4645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:56:46 has no hits.
BO10239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:52 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-PA | 212..1143 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:39 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-PA | 212..1143 | 18..947 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:48 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 429..1357 | 19..947 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:15 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 429..1357 | 19..947 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:15 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6850198..6851126 | 19..947 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:48 Download gff for
BO10239.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6744231..6745159 | 19..947 | 100 | | Minus |
BO10239.5prime Sequence
952 bp (802 high quality bases) assembled on 2006-04-19
> BO10239.5prime
GAAGTTATCAGTCGACATGGCGGATCCGGAGGATTATGATCTGAACTTTG
TTCAGCTGAGTCGCCAGCAGGCGCTGCAGCGATATGCGGGTGCAGTGCGT
CAGCTGCGCCGGCTGGCTGATCAGCGGTACGGTGTGCGATCCCTTAGCTT
CGACAATTATGTGCTGTTTCAGTATTTCCGGCAACGCAATTGGCAAACTG
GCGTCACGCCACCCGCCCCCTTAATGGCCTACCTCAAGCTTGAGGTACTG
CATCATCTGCTGGACCGACGACGACAGATCCTCTGCTGGCTGTTCTACCT
CACGGTGGTGTCGCTCTGCGTGGCCGCCTACCGTTATGAGGTAACCAGCT
CCACCGGCGGACATCAGGAGCGCGTTGTCCAGGCCATGGTCTATCCCGGG
ATGCGCATGTGGCGGCGGATGACCATGCCGCTGATCCAACGATTCCCACA
GCTTACCGAACTCTACGACGAGTCCTGCCTGATGGGCAATCCGTTTTTTC
AGCTAGAGGATCTGAGCTGCGGACCGTGTGCCGAAGTGGAGACCGTCTGG
CTGGAGGGCGAGGAGTGTGCAAATGGTCATCCGCTGGAGTACCATCAGAA
CCACAAGTGCCATCAGCCGGAGGGATCGCCCATCGCCTTTAGGAGCAACC
AGCAGGAGTCCATTGACTTGAGCCACTTCTACAACATCTACGCTAGCAAT
CATCAGATCTTCCAGCGCGACGCGTATCGGGTGCACTCGACCAACCAGGA
TGTGCACAATCTTGAGGATCTCTTTGGGCAGTTCAACAGCAGCTGGACCC
AGCAGGCGCACAATCTTTGGCGCTGNCATCGCATGCTGCCCGCGCGACTC
CTGCGTCCCATTTTCGCCCGGNCAACGCGATTGCCCAGCATGGGCGTGGC
CCTGGAGCGTTATGTGGCCATCGATACTGCCCAGGCGCCCGGCTACCCTT
GC
BO10239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-PA | 1143 | CG4558-RA | 1..923 | 17..939 | 4552 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-RB | 1868 | CG4558-RB | 217..1147 | 16..946 | 4588 | 99.5 | Plus |
| CG4558-RA | 2115 | CG4558-RA | 217..1147 | 16..946 | 4588 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6849986..6850916 | 16..946 | 4588 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:02:23 has no hits.
BO10239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:52 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:41 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-PA | 1..937 | 17..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:24:18 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 212..1154 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:39:40 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 212..1154 | 10..952 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:39:40 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6849981..6850923 | 10..952 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:24:18 Download gff for
BO10239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6744014..6744956 | 10..952 | 99 | | Plus |
BO10239.complete Sequence
1174 bp (1174 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631689
> BO10239.complete
GAAGTTATCAGTCGACATGGCGGATCCGGAGGATTATGATCTGAACTTTG
TTCAGCTGAGTCGCCAGCAGGCGCTGCAGCGATATGCGGGTGCAGTGCGT
CAGCTGCGCCGGCTGGCTGATCAGCGGTACGGTGTGCGATCCCTTAGCTT
CGACAATTATGTGCTGTTTCAGTATTTCCGGCAACGCAATTGGCAAACTG
GCGTCACGCCACCCGCCCCCTTAATGGCCTACCTCAAGCTTGAGGTACTG
CATCATCTGCTGGACCGACGACGACAGATCCTCTGCTGGCTGTTCTACCT
CACGGTGGTGTCGCTCTGCGTGGCCGCCTACCGTTATGAGGTAACCAGCT
CCACCGGCGGACATCAGGAGCGCGTTGTCCAGGCCATGGTCTATCCCGGG
ATGCGCATGTGGCGGCGGATGACCATGCCGCTGATCCAACGATTCCCACA
GCTTACCGAACTCTACGACGAGTCCTGCCTGATGGGCAATCCGTTTTTTC
AGCTAGAGGATCTGAGCTGCGGACCGTGTGCCGAAGTGGAGACCGTCTGG
CTGGAGGGCGAGGAGTGTGCAAATGGTCATCCGCTGGAGTACCATCAGAA
CCACAAGTGCCATCAGCCGGAGGGATCGCCCATCGCCTTTAGGAGCAACC
AGCAGGAGTCCATTGACTTGAGCCACTTCTACAACATCTACGCTAGCAAT
CATCAGATCTTCCAGCGCGACGCGTATCGGGTGCACTCGACCAACCAGGA
TGTGCACAATCTTGAGGATCTCTTTGGGCAGTTCAACAGCAGCTGGACCC
AGCAGGCGCACAATCTTTGGCGCTGCAATCGCATGCTGCCCGCGCGACTC
CTGCGTCCCATTTTCGCCCGGCCAACGCGATTGCCCAGCATGGGCGTGGC
CCTGGAGCGTTATGTGGCCATCGATACTGCCCAGGCGCCGGCCTACACAT
TGCCGGAAACGGAATGCCCCAATGTCTATATACACCAGGCGGTAGGCACG
CGGTTCATCATCCTGCGACCCACCAGTGAGTGCCGGCACCGCTGTCGCAC
CTTGTCTCTGCGACTTACCCAGTCCTTTGTGCGTGAGTATCGTTTCGATT
GCTTTTGTTCCGGGGCCAACACATCACATCAGAAGGTTCACTGTTTAAGG
ATACCTGCAAGCTTTCTAGACCAT
BO10239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-RA | 1143 | CG4558-PA | 1..1140 | 17..1156 | 5700 | 100 | Plus |
| CG4558-RB | 1158 | CG4558-PB | 1..1066 | 17..1082 | 5330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-RA | 2115 | CG4558-RA | 217..1357 | 16..1156 | 5705 | 100 | Plus |
| CG4558-RB | 1868 | CG4558-RB | 217..1283 | 16..1082 | 5335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6849986..6851126 | 16..1156 | 5705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:43:42 has no hits.
BO10239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:23 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 1..1143 | 17..1157 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:07 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 209..1354 | 10..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:07 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 218..1357 | 17..1158 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:23 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 210..1355 | 10..1156 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:28 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4558-RA | 218..1357 | 17..1158 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:25:28 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6849987..6851126 | 17..1158 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:07 Download gff for
BO10239.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6744020..6745159 | 17..1158 | 99 | | Plus |
BO10239.pep Sequence
Translation from 16 to 1174
> BO10239.pep
MADPEDYDLNFVQLSRQQALQRYAGAVRQLRRLADQRYGVRSLSFDNYVL
FQYFRQRNWQTGVTPPAPLMAYLKLEVLHHLLDRRRQILCWLFYLTVVSL
CVAAYRYEVTSSTGGHQERVVQAMVYPGMRMWRRMTMPLIQRFPQLTELY
DESCLMGNPFFQLEDLSCGPCAEVETVWLEGEECANGHPLEYHQNHKCHQ
PEGSPIAFRSNQQESIDLSHFYNIYASNHQIFQRDAYRVHSTNQDVHNLE
DLFGQFNSSWTQQAHNLWRCNRMLPARLLRPIFARPTRLPSMGVALERYV
AIDTAQAPAYTLPETECPNVYIHQAVGTRFIILRPTSECRHRCRTLSLRL
TQSFVREYRFDCFCSGANTSHQKVHCLRIPASFLDH
BO10239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4558-PA | 380 | CG4558-PA | 1..380 | 1..380 | 2061 | 100 | Plus |
| CG4558-PB | 385 | CG4558-PB | 1..360 | 1..360 | 1921 | 98.9 | Plus |
