Clone BO10242 Report

Search the DGRC for BO10242

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:42
Vector:pDNR-Dual
Associated Gene/Transcriptpigeon-RA
Protein status:BO10242.pep: validated full length
Sequenced Size:2779

Clone Sequence Records

BO10242.3prime Sequence

961 bp (831 high quality bases) assembled on 2006-04-19

> BO10242.3prime
ATGGTCTAGAAAGCTTGCAGCCTCCAGTTTCAGCTGATCGATGGAGCTTA
GAGTAGTTTCAATAAGCAGATTGTAGTCCAATTCGTTTAGACTGGCCTTC
GCAGTCAGCAGGTCCAGAAAGGAGTCCAGTGGCGAAAGGGCTTCGGCAGT
TAGATCGCTCCGCGCATTATTTCGCGATTGATTCACGCAGGCCGTGGGTC
GCTGCTGGTGCAACACCTCCTGCTGCTGACCCGACAGAATGTTGGCCGCA
TGCTCGCGTCCGCGGATCATAAGGCTGTCCGGATGCTGCCAGCATTTGAG
TAACCTTTGAGCACGCTGCTTGGGCAGAGCAGACAAAAGTGATAGCTTCC
GCTCAATGCCCAGTGGAGAATCTTCAATATCGAAAACAATGGCCTTCATC
ACATCCACTTGCAGTTCGAACACATGATTTTCCACATACTGCAGAAACAT
ATCATAGCCCAGCGCACGATAGCCCAAGTAGGTGAAGAACGAGGAGAAAC
CCTCGGGCAGGGGAAACGCAATCGATTCCACAGCCAGGCAATAGCGCTCG
AGGATTAGAAACAGAGAGTGCTGTTGATTGGCAGCCATTTGGTCAATCAA
CTGAAAACCCCTCGAGGTCTCCATGCGCGCATCTAGGCCTGCAGCACGAC
AAACCAGAGAGCAAAGAGCCCGCGAGAGTTCAAGCTGCGCGGAAACGAAC
TGGGAGGCCACCGCATGCACATGAGCTGGAGCCTGGGAGCGCTCGAAAAA
GGTCTCCTTCAGCCAGCGGAAGCCAGTGTTGGGCTTTGACGTGTGCTTCA
CCAGGTGAACGCTCAGCTCGCGCAGATACACAGAAATGACGTGCTCCTGC
TTGCTGGCTGTGCATCCCTCCAGTTCGATAAAGGGCAGCACTTCGTTGCT
GAATGGAAAGCACTTCCGCTACTATAGTCACCAATCCACCGGTGCCCGTG
TCTGGCGAAAG

BO10242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10739-PA 2748 pigeon-RA 1855..2745 909..19 4455 100 Minus
CG10739-PA 2748 pigeon-RA 1801..1829 961..933 145 100 Minus
CG10739-PA 2748 pigeon-RA 1829..1856 934..907 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 3187 CG10739-RA 1887..2831 961..19 4675 99.8 Minus
pigeon-RB 3334 CG10739-RB 1887..2694 961..156 3990 99.8 Minus
pigeon-RB 3334 CG10739-RB 2833..2978 164..19 700 98.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19188298..19188531 829..596 1170 100 Minus
2L 23513712 2L 19188875..19189100 381..156 1130 100 Minus
2L 23513712 2L 19188591..19188805 595..381 1075 100 Minus
2L 23513712 2L 19189445..19189582 156..19 690 100 Minus
2L 23513712 2L 19188108..19188242 961..829 575 98.5 Minus
Blast to na_te.dros performed on 2015-02-12 12:54:52 has no hits.

BO10242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:55 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1801..2748 16..961 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:45 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1801..2748 16..961 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:55:11 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 1887..2838 10..961 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:20:10 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 1887..2838 10..961 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:20:10 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19188108..19188242 829..961 98 -> Minus
2L 19188299..19188531 596..828 100 -> Minus
2L 19188591..19188805 381..595 100 -> Minus
2L 19188876..19189100 156..380 100 -> Minus
2L 19189446..19189589 10..155 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:55:11 Download gff for BO10242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19188108..19188242 829..961 98 -> Minus
arm_2L 19188299..19188531 596..828 100 -> Minus
arm_2L 19188591..19188805 381..595 100 -> Minus
arm_2L 19188876..19189100 156..380 100 -> Minus
arm_2L 19189446..19189589 10..155 97   Minus

BO10242.5prime Sequence

953 bp (839 high quality bases) assembled on 2006-04-19

> BO10242.5prime
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGCAGACAACTCCTACTTTAAGCCCCACGCTCTCCGC
CTTTCAGTTTAACGAANAACAGCCAACGGAAACAGTGCTTAATATACCCC
TCAATTTGCCAAAGCTGCCCAATGGCTCCAAAGAGGAATCGCCNAGCTAC
GATGACGATGCNGNTCCCTTGCGCGTGCACGATAGTTCGCTAAATCTCAT
CATACTGGCGGACACCTCGGGCATGTTTTTCGTCTGTCACTACTACCTGT
ACC

BO10242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10739-PA 2748 pigeon-RA 1..937 17..953 4609 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RB 3334 CG10739-RB 87..1023 17..953 4641 99.6 Plus
pigeon-RA 3187 CG10739-RA 87..1023 17..953 4641 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19186249..19186655 79..485 2035 100 Plus
2L 23513712 2L 19186719..19187020 486..787 1499 99.7 Plus
2L 23513712 2L 19187078..19187244 787..953 802 98.2 Plus
2L 23513712 2L 19186129..19186192 17..80 320 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:18:24 has no hits.

BO10242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:56 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1..937 17..953 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:46 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10739-PA 1..937 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 16:32:28 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..1023 17..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:55:53 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..1023 17..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:55:53 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19186129..19186192 17..80 100 -> Plus
2L 19186251..19186655 81..485 100 -> Plus
2L 19186719..19187020 486..787 99 -> Plus
2L 19187079..19187244 788..953 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 16:32:28 Download gff for BO10242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19186129..19186192 17..80 100 -> Plus
arm_2L 19186251..19186655 81..485 100 -> Plus
arm_2L 19186719..19187020 486..787 99 -> Plus
arm_2L 19187079..19187244 788..953 98   Plus

BO10242.complete Sequence

2779 bp assembled on 2007-10-05

GenBank Submission: FJ631690

> BO10242.complete
GAAGTTATCAGTCGACATGCTGCGGCAGGAGAACTTGGCAGCCAACTTCT
GCGGTCTCCTGGCCAGCCAGGGCTATAAAGAGAAGGCAAACGAGTGGCGC
ATTTTGGGCCAGGAACAGGATGGATCTCTGCTCACGTCCTGGATATTCGA
GTACGCGGACGAGGATCAGCGCAAGGAGACGTGCATTGGCCACTTTCACG
CCACCAAGAAGCAGCTGCGACTCCTTTGGACCCTCGACAATTGCCGTGAG
ATCGTCCAGGCAACGATTAACAGCAGTGTCACATTGCTGTCCTTCGTGGA
GAAAACTGAGGGCAAGCTCTATCAGGCCTTTGTCGTGGAGGTAAGGAGCT
CCGAAGGTGGCACGGCCACGCCCCTCAACTCGGAGCCCTCCAACCGCCAG
ATGATGACGCAGTTCCTGTGGCGCGTCGAGAGTGCCACGCGCACCTGCTG
GCAGGACAAGCTACTGGTGCTCACCCACGAGGAATCCATCAAGCAGTACA
GCTGCGTGGTCAAGCAGAGCTCCACCACATGCTCGACTGGCGGAGGCGAG
GGCAGCGCCTGGAGGCTAGACACCAGCATACTGACCTACGAAACGCTGGC
CAGGAACTTTAGCTGGGCCCAGTGGGATCCCGAGTGCCAGGCTCTTTATT
ACATTCACTTGAAGCCGAAGGCCAAGAGCCTCAGTCTGCTGGACGAGAGG
GAGGAGGCTGGCGAGCAGACAACTCCTACTTTAAGCCCCACGCTCTCCGC
CTTTCAGTTTAACGAAAAACAGCCAACGGAAACAGTGCTTAATATACCCC
TCAATTTGCCAAAGCTGCCCAATGGCTCCAAAGAGGAATCGCCAAGCTAC
GATGACGATGCGGTTCCCTTGCGCGTGCACGATAGTTCGCTAAATCTCAT
CATACTGGCGGACACCTCGGGCATGTTTTTCGTCTGTCACTACTACCTGT
ACCAGCCGATGCAGTCGGAGCAAAGGGATGTGCACTTTGCCTACTCGGTG
ACTTTGCTTCACCACGGCTATGTGGTGCACTGCGTCATGCCCGGTGTGCC
GTGGCAAAAGGCCCGTCTGCTGAGGCCAACATTTGCGCTACACGGCCAGC
ATCACTTGCTGGTGTCGTCCGCCTTTTTTGTCCACCTCTTGGACGTGGGA
CTGCAGCACGAACCGAACTGCCATATCGTGTGTGCAGCCCACAATCGAAG
TCCCGATATCACACAGCTGGTGCCTTTGCGAAAGTGGGGAGCTCTGGCTT
ATGATGCGGCCACCTTGGATCTGGTCTCGTTGTCCGTGCCCAAATCCCAT
TTGATAGAGGCTTTCCGCAATGACAGTTCGCTGGACAATAGAATCAGCAT
TATCCACTACTTCCTTTTGCACTCGAACGATATGGATGTGTTGGCCGAGC
TGCTGAACAATATCTTGGAGCGACCACTCTCCCTGGATACGGTGGCTTTG
CTGAAGGAGGCTCTTGTGGCTGGCAGCTATGCGGCTGCTGTTCGCGGACT
ACCAGAGGATGCCAAGCCACTGATGCGACTACTGCCATTGACTACTGCCT
TAGCCTCGCGACCAATCCACGCAAAGGTGGCCGATATAAGCGTGGGTCTC
TCTCATGAAACCCTGCACAATACCAGCATGATGCTGCTCTCGCCACAGCA
GCGCCTTTCACCTTATCGCACGGACATCTGGACTCGCTTATGGGACCTTC
TCAACGAGTCAGCCAAGCAGGAGCAGCCTAGATTCAGTGCTGAGCAGGTG
ACGGAGAAGTTGATCTTTAGTTTGGCCTGCTACCAGCCGGAGGCTCTGTC
CAGATGCACCACGCCACTTTCGCCAGACACGGGCACCGGTGGATTTGGTG
ACTATAGTAGCGGAAGTGCTTTTCCATTCAGCAACGAAGTGCTGCCCTTT
ATCGAACTGGAGGGATGCACAGCCAGCAAGCAGGAGCACGTCATTTCTGT
GTATCTGCGCGAGCTGAGCGTTCACCTGGTGAAGCACACGTCAAAGCCCA
ACACTGGCTTCCGCTGGCTGAAGGAGACCTTTTTCGAGCGCTCCCAGGCT
CCAGCTCATGTGCATGCGGTGGCCTCCCAGTTCGTTTCCGCGCAGCTTGA
ACTCTCGCGGGCTCTTTGCTCTCTGGTTTGTCGTGCTGCAGGCCTAGATG
CGCGCATGGAGACCTCGAGGGGTTTTCAGTTGATTGACCAAATGGCTGCC
AATCAACAGCACTCTCTGTTTCTAATCCTCGAGCGCTATTGCCTGGCTGT
GGAATCGATTGCGTTTCCCCTGCCCGAGGGTTTCTCCTCGTTCTTCACCT
ACTTGGGCTATCGTGCGCTGGGCTATGATATGTTTCTGCAGTATGTGGAA
AATCATGTGTTCGAACTGCAAGTGGATGTGATGAAGGCCATTGTTTTCGA
TATTGAAGATTCTCCACTGGGCATTGAGCGGAAGCTATCACTTTTGTCTG
CTCTGCCCAAGCAGCGTGCTCAAAGGTTACTCAAATGCTGGCAGCATCCG
GACAGCCTTATGATCCGCGGACGCGAGCATGCGGCCAACATTCTGTCGGG
TCAGCAGCAGGAGGTGTTGCACCAGCAGCGACCCACGGCCTGCGTGAATC
AATCGCGAAATAATGCGCGGAGCGATCTAACTGCCGAAGCCCTTTCGCCA
CTGGACTCCTTTCTGGACCTGCTGACTGCGAAGGCCAGTCTAAACGAATT
GGACTACAATCTGCTTATTGAAACTACTCTAAGCTCCATCGATCAGCTGA
AACTGGAGGCTGCAAGCTTTCTAGACCAT

BO10242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 2748 CG10739-PA 1..2745 17..2761 13725 100 Plus
pigeon-RB 2733 CG10739-PB 1..2608 17..2624 13040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-RA 3187 CG10739-RA 87..2831 17..2761 13725 100 Plus
pigeon-RB 3334 CG10739-RB 87..2694 17..2624 13040 100 Plus
pigeon-RB 3334 CG10739-RB 2833..2978 2616..2761 700 98.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19187078..19188242 787..1951 5825 100 Plus
2L 23513712 2L 19186249..19186655 79..485 2035 100 Plus
2L 23513712 2L 19186719..19187020 486..787 1510 100 Plus
2L 23513712 2L 19188298..19188531 1951..2184 1170 100 Plus
2L 23513712 2L 19188875..19189100 2399..2624 1130 100 Plus
2L 23513712 2L 19188591..19188805 2185..2399 1075 100 Plus
2L 23513712 2L 19189445..19189582 2624..2761 690 100 Plus
2L 23513712 2L 19186129..19186192 17..80 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:25 has no hits.

BO10242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:01 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 1..2748 17..2764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:56 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 89..2840 17..2770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:43 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..2831 17..2763 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:01 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 89..2840 17..2770 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:32 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
pigeon-RA 87..2831 17..2763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:32 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19189446..19189582 2625..2763 98   Plus
2L 19186129..19186192 17..80 100 -> Plus
2L 19186251..19186655 81..485 100 -> Plus
2L 19186719..19187020 486..787 100 -> Plus
2L 19187079..19188242 788..1951 100 -> Plus
2L 19188299..19188531 1952..2184 100 -> Plus
2L 19188591..19188805 2185..2399 100 -> Plus
2L 19188876..19189100 2400..2624 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:43 Download gff for BO10242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19186129..19186192 17..80 100 -> Plus
arm_2L 19186251..19186655 81..485 100 -> Plus
arm_2L 19186719..19187020 486..787 100 -> Plus
arm_2L 19187079..19188242 788..1951 100 -> Plus
arm_2L 19188299..19188531 1952..2184 100 -> Plus
arm_2L 19188591..19188805 2185..2399 100 -> Plus
arm_2L 19188876..19189100 2400..2624 100 -> Plus
arm_2L 19189446..19189582 2625..2763 98   Plus

BO10242.pep Sequence

Translation from 16 to 2779

> BO10242.pep
MLRQENLAANFCGLLASQGYKEKANEWRILGQEQDGSLLTSWIFEYADED
QRKETCIGHFHATKKQLRLLWTLDNCREIVQATINSSVTLLSFVEKTEGK
LYQAFVVEVRSSEGGTATPLNSEPSNRQMMTQFLWRVESATRTCWQDKLL
VLTHEESIKQYSCVVKQSSTTCSTGGGEGSAWRLDTSILTYETLARNFSW
AQWDPECQALYYIHLKPKAKSLSLLDEREEAGEQTTPTLSPTLSAFQFNE
KQPTETVLNIPLNLPKLPNGSKEESPSYDDDAVPLRVHDSSLNLIILADT
SGMFFVCHYYLYQPMQSEQRDVHFAYSVTLLHHGYVVHCVMPGVPWQKAR
LLRPTFALHGQHHLLVSSAFFVHLLDVGLQHEPNCHIVCAAHNRSPDITQ
LVPLRKWGALAYDAATLDLVSLSVPKSHLIEAFRNDSSLDNRISIIHYFL
LHSNDMDVLAELLNNILERPLSLDTVALLKEALVAGSYAAAVRGLPEDAK
PLMRLLPLTTALASRPIHAKVADISVGLSHETLHNTSMMLLSPQQRLSPY
RTDIWTRLWDLLNESAKQEQPRFSAEQVTEKLIFSLACYQPEALSRCTTP
LSPDTGTGGFGDYSSGSAFPFSNEVLPFIELEGCTASKQEHVISVYLREL
SVHLVKHTSKPNTGFRWLKETFFERSQAPAHVHAVASQFVSAQLELSRAL
CSLVCRAAGLDARMETSRGFQLIDQMAANQQHSLFLILERYCLAVESIAF
PLPEGFSSFFTYLGYRALGYDMFLQYVENHVFELQVDVMKAIVFDIEDSP
LGIERKLSLLSALPKQRAQRLLKCWQHPDSLMIRGREHAANILSGQQQEV
LHQQRPTACVNQSRNNARSDLTAEALSPLDSFLDLLTAKASLNELDYNLL
IETTLSSIDQLKLEAASFLDH

BO10242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
pigeon-PA 915 CG10739-PA 1..915 1..915 4746 100 Plus
pigeon-PB 910 CG10739-PB 1..871 1..871 4531 99.9 Plus