Clone BO10243 Report

Search the DGRC for BO10243

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:43
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO10243.pep: validated full length
Sequenced Size:430

Clone Sequence Records

BO10243.5prime Sequence

428 bp (427 high quality bases) assembled on 2006-04-19

> BO10243.5prime
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACAGCAAGCTTTCTAGACC

BO10243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30282-PA 399 CG30282-RA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-12 13:50:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489433..21489828 412..17 1980 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:50:03 has no hits.

BO10243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:58 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..416 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:50 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 17..416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:42 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489429..21489835 11..416 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 17:48:42 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489429..21489835 11..416 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:36 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376934..17377340 11..416 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:37:36 Download gff for BO10243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376934..17377340 11..416 98   Minus

BO10243.3prime Sequence

428 bp (427 high quality bases) assembled on 2006-04-19

> BO10243.3prime
ATGGTCTAGAAAGCTTGCTGTGCATCTCTTGGGCATTTTGCAAAACATTT
TTACATGCGCCGGCTGTTGTTTCAAATTCCAGTTCAAGTCACAACCATGA
TGGGGCAAGTGGCAAGTGGCAAGTGGAGGTGCGGCAAGTGGCTCGGCGGA
TTGCCGCTGAATAATCCACCCAACCGGGCCGCAAAAAAGAAAAAAAAACG
AACATTCACATTCAGAGCGGTTAAGTGTTACGCTGGAGCGTAACCAAAGT
GTCGTCGTTGCTGTTTTTGTCGCCCGCCTTTCGCTCAAGTGCAAATCTCC
AGATGGAATAAAAAAGCGTAAAAAATTTGTACCACCACCCCCCTTCCCAA
CCCACTTGAGATTCCGCATGTCCTGTGTGTGTTTCGGTTTGGTTTTCCAG
GGATTACGCGGCATGTCGACTGATAACT

BO10243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG30282-PA 399 CG30282-RA 1..396 414..19 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 15:53:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489433..21489828 19..414 1980 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:53:48 has no hits.

BO10243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:33:57 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 15..414 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:48 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30282-PA 1..399 15..414 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:19 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489429..21489835 15..420 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:07:19 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21489429..21489835 15..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:59:22 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376934..17377340 15..420 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-14 14:59:22 Download gff for BO10243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376934..17377340 15..420 98   Plus

BO10243.complete Sequence

430 bp (430 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631691

> BO10243.complete
GAAGTTATCAGTCGACATGCCGCGTAATCCCTGGAAAACCAAACCGAAAC
ACACACAGGACATGCGGAATCTCAAGTGGGTTGGGAAGGGGGGTGGTGGT
ACAAATTTTTTACGCTTTTTTATTCCATCTGGAGATTTGCACTTGAGCGA
AAGGCGGGCGACAAAAACAGCAACGACGACACTTTGGTTACGCTCCAGCG
TAACACTTAACCGCTCTGAATGTGAATGTTCGTTTTTTTTTCTTTTTTGC
GGCCCGGTTGGGTGGATTATTCAGCGGCAATCCGCCGAGCCACTTGCCGC
ACCTCCACTTGCCACTTGCCACTTGCCCCATCATGGTTGTGACTTGAACT
GGAATTTGAAACAACAGCCGGCGCATGTAAAAATGTTTTGCAAAATGCCC
AAGAGATGCACAGCAAGCTTTCTAGACCAT

BO10243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 15:30:36 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 15:30:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21489433..21489828 412..17 1980 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:30:36 has no hits.

BO10243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:37 Download gff for BO10243.complete
Subject Subject Range Query Range Percent Splice Strand
H-RA 138..159 159..180 95   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 14:07:37 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:35 Download gff for BO10243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21489431..21489828 17..414 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:35 Download gff for BO10243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21489431..21489828 17..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:45 Download gff for BO10243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376936..17377333 17..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:45 Download gff for BO10243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17376936..17377333 17..414 99   Minus

BO10243.pep Sequence

Translation from 16 to 430

> BO10243.pep
MPRNPWKTKPKHTQDMRNLKWVGKGGGGTNFLRFFIPSGDLHLSERRATK
TATTTLWLRSSVTLNRSECECSFFFLFCGPVGWIIQRQSAEPLAAPPLAT
CHLPHHGCDLNWNLKQQPAHVKMFCKMPKRCTASFLDH
Sequence BO10243.pep has no blast hits.