Clone BO10245 Report

Search the DGRC for BO10245

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG5599-RA
Protein status:BO10245.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO10245.3prime Sequence

953 bp (771 high quality bases) assembled on 2006-04-19

> BO10245.3prime
ATGGTCTAGAAAGCTTGCGTGTAGTAGGAAAAGGGCAGGATTCTCCAGAT
ACTGCTTCCAAACGTTGGAGAAGCTGGCCATGGTCACGCCGTCGATGACG
CGATGGTCGGCGGACCAGCTTACGCTCATCACATACGCCTTGACCACCTC
ATCCTTGTCGTTGAAACGCGGCACCGCCTTGGTCCTACCCATAGCACCGA
TGGCCACCTGCGGCGCCATTATACAAGGATGTGTGTAGGTACCGCCAATC
ACTCCTATGTTGGAAAGCGAGAAGGTGCCATCGGCAAAGTCTGCCGGAGA
CAGGGAGCCAGTCCTACCGCGCTCCACCAGTGCATTCAGATCCTTGGCAA
TCTCGATAATAGTCTTTGTCTGGCAGTTCTTAATATTCGGCACCACTAGA
CCCTGTGGTGTATCGATGGCAACGCTTATGTTGTGGGCACCCTTGAAGAC
CAGCGATTCGCTGGCCAAATCCAGGGAGCTGTTAACAATTGGATATTTGG
ACAGCGCAATGCTAGCAGCCTTGATGCAGAACGGCATGAACGTGAGCTTG
GGCACGCCATTCTCCTTGGCCACTAACTGCAGTTGGTTACGGAATTGCAT
CAACTGGGTCATGTCGATTTCGTCGCTGTAAGCAAAATGGGGGATTTTCA
GGGATTCCGTCATCGATTTCAGCATGGCCTTGCGCACTCCCTTGAGCACT
TCGACGCGATCAGCGGGCACAGAAACACTTGCTGCTCCACTTGGAGCAGC
ACTAGGCGTTTTCGCCAATAGTGTGGGATGTGGAACGTTAGTACCGGGAG
GAACTTGGCCCAGAAACTCCAGAATATCACCCTTAAGCACACGACCATTC
TTTCCCGTTGCTGGCACCTTGGCCAGATCCAACTGGTGTTCCTTGGCCAG
ACGACGAACCGAGGGCGTGGCGGGTATGATCACACGACCTTCTGTGGGCG
TCG

BO10245.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-PA 1389 CG5599-RA 452..1386 953..19 4675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:04:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-RA 1872 CG5599-RA 554..1488 953..19 4675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15087552..15087951 649..250 2000 100 Minus
X 23542271 X 15087182..15087486 953..649 1525 100 Minus
X 23542271 X 15088014..15088245 250..19 1160 100 Minus
Blast to na_te.dros performed on 2015-02-01 10:04:18 has no hits.

BO10245.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:01 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-PA 452..1389 18..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:54 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-PA 452..1389 18..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:23:46 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 554..1488 19..953 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:01:14 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 554..1488 19..953 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:01:14 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15087182..15087486 649..953 100 -> Minus
X 15087553..15087951 250..648 100 -> Minus
X 15088015..15088245 19..249 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:23:46 Download gff for BO10245.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14981215..14981519 649..953 100 -> Minus
arm_X 14981586..14981984 250..648 100 -> Minus
arm_X 14982048..14982278 19..249 100   Minus

BO10245.5prime Sequence

857 bp (770 high quality bases) assembled on 2006-04-19

> BO10245.5prime
GAAGTTATCAGTCGACATGGCAACACACCTCCTCCGAAACGGCGCTACAT
GTTGGCTGCTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGC
CTGCATGTGACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGA
CATTGGCGAGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAG
AGGGCGACACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGAC
AAGGCATCGGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGAT
TCACCACAAAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATT
TCGATGTGGTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCT
TCCTCCTCCACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCA
ATCAGCTGAAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCG
CCACGCCCTCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCC
AAGGTGCCAGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCT
GGAGTTTCTGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACAC
TATTGGCGAAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCT
GTGCCCGCTGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCT
GAAATCGATGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACG
AAATCGACATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTG
GGCAAGG

BO10245.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-PA 1389 CG5599-RA 1..841 17..857 4180 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-RA 1872 CG5599-RA 103..943 17..857 4190 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15086802..15087486 88..772 3425 100 Plus
X 23542271 X 15087552..15087637 772..857 415 98.8 Plus
X 23542271 X 15086227..15086303 17..93 370 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 06:20:18 has no hits.

BO10245.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:02 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:55 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:34 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 103..943 17..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:00 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 103..943 17..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:00 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15086227..15086298 17..88 100 -> Plus
X 15086803..15087486 89..772 100 -> Plus
X 15087553..15087637 773..857 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:34 Download gff for BO10245.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14980260..14980331 17..88 100 -> Plus
arm_X 14980836..14981519 89..772 100 -> Plus
arm_X 14981586..14981670 773..857 98   Plus

BO10245.complete Sequence

1420 bp assembled on 2007-10-17

GenBank Submission: FJ631692

> BO10245.complete
GAAGTTATCAGTCGACATGGCAACACACCTCCTCCGAAACGGCGCTACAT
GTTGGCTGCTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGC
CTGCATGTGACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGA
CATTGGCGAGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAG
AGGGCGACACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGAC
AAGGCATCGGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGAT
TCACCACAAAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATT
TCGATGTGGTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCT
TCCTCCTCCACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCA
ATCAGCTGAAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCG
CCACGCCCTCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCC
AAGGTGCCAGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCT
GGAGTTTCTGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACAC
TATTGGCGAAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCT
GTGCCCGCTGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCT
GAAATCGATGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACG
AAATCGACATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTG
GCCAAGGAGAATGGCGTGCCCAAGCTCACGTTCATGCCGTTCTGCATCAA
GGCTGCTAGCATTGCGCTGTCCAAATATCCAATTGTTAACAGCTCCCTGG
ATTTGGCCAGCGAATCGCTGGTCTTCAAGGGTGCCCACAACATAAGCGTT
GCCATCGATACACCACAGGGTCTAGTGGTGCCGAATATTAAGAACTGCCA
GACAAAGACTATTATCGAGATTGCCAAGGATCTGAATGCACTGGTGGAGC
GCGGTAGGACTGGCTCCCTGTCTCCGGCAGACTTTGCCGATGGCACCTTC
TCGCTTTCCAACATAGGAGTGATTGGCGGTACCTACACACATCCTTGTAT
AATGGCGCCGCAGGTGGCCATCGGTGCTATGGGTAGGACCAAGGCGGTGC
CGCGTTTCAACGACAAGGATGAGGTGGTCAAGGCGTATGTGATGAGCGTA
AGCTGGTCCGCCGACCATCGCGTCATCGACGGCGTGACCATGGCCAGCTT
CTCCAACGTTTGGAAGCAGTATCTGGAGAATCCTGCCCTTTTCCTACTAC
ACGCAAGCTTTCTAGACCAT

BO10245.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-RA 1389 CG5599-PA 1..1386 17..1402 6930 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-RA 1872 CG5599-RA 103..1488 17..1402 6930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15086802..15087486 88..772 3425 100 Plus
X 23542271 X 15087552..15087951 772..1171 2000 100 Plus
X 23542271 X 15088014..15088245 1171..1402 1160 100 Plus
X 23542271 X 15086227..15086303 17..93 370 98.7 Plus
Blast to na_te.dros performed on 2014-11-26 15:45:40 has no hits.

BO10245.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:01 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 1..1389 17..1403 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:25 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 90..1475 17..1402 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:50 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 103..1488 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:38 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 90..1475 17..1404 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:05 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
CG5599-RA 103..1488 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:05 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
X 15086227..15086298 17..88 100 -> Plus
X 15086803..15087486 89..772 100 -> Plus
X 15087553..15087951 773..1171 100 -> Plus
X 15088015..15088245 1172..1404 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:50 Download gff for BO10245.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14980260..14980331 17..88 100 -> Plus
arm_X 14980836..14981519 89..772 100 -> Plus
arm_X 14981586..14981984 773..1171 100 -> Plus
arm_X 14982048..14982278 1172..1404 99   Plus

BO10245.pep Sequence

Translation from 16 to 1420

> BO10245.pep
MATHLLRNGATCWLLRNCISQRAALRRCLHVTSSLDKTVSFNLSDIGEGI
REVTVKEWFVKEGDTVEQFDNLCEVQSDKASVTITSRYDGKITKIHHKID
EIALVGKPLLDFDVVNEDEDEPEDSSSSSSSTSSDSSASENEEKQSAEAS
ATPTEGRVIIPATPSVRRLAKEHQLDLAKVPATGKNGRVLKGDILEFLGQ
VPPGTNVPHPTLLAKTPSAAPSGAASVSVPADRVEVLKGVRKAMLKSMTE
SLKIPHFAYSDEIDMTQLMQFRNQLQLVAKENGVPKLTFMPFCIKAASIA
LSKYPIVNSSLDLASESLVFKGAHNISVAIDTPQGLVVPNIKNCQTKTII
EIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVIGGTYTHPCIMAPQV
AIGAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASFSNVWK
QYLENPALFLLHASFLDH

BO10245.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5599-PA 462 CG5599-PA 1..462 1..462 2348 100 Plus
CG5261-PF 512 CG5261-PF 75..512 33..461 354 25.7 Plus
CG5261-PB 512 CG5261-PB 75..512 33..461 354 25.7 Plus
CG5261-PA 421 CG5261-PA 5..421 54..461 353 26.5 Plus
CG5261-PD 489 CG5261-PD 75..489 33..461 345 26.3 Plus