Clone Sequence Records
BO10245.3prime Sequence
953 bp (771 high quality bases) assembled on 2006-04-19
> BO10245.3prime
ATGGTCTAGAAAGCTTGCGTGTAGTAGGAAAAGGGCAGGATTCTCCAGAT
ACTGCTTCCAAACGTTGGAGAAGCTGGCCATGGTCACGCCGTCGATGACG
CGATGGTCGGCGGACCAGCTTACGCTCATCACATACGCCTTGACCACCTC
ATCCTTGTCGTTGAAACGCGGCACCGCCTTGGTCCTACCCATAGCACCGA
TGGCCACCTGCGGCGCCATTATACAAGGATGTGTGTAGGTACCGCCAATC
ACTCCTATGTTGGAAAGCGAGAAGGTGCCATCGGCAAAGTCTGCCGGAGA
CAGGGAGCCAGTCCTACCGCGCTCCACCAGTGCATTCAGATCCTTGGCAA
TCTCGATAATAGTCTTTGTCTGGCAGTTCTTAATATTCGGCACCACTAGA
CCCTGTGGTGTATCGATGGCAACGCTTATGTTGTGGGCACCCTTGAAGAC
CAGCGATTCGCTGGCCAAATCCAGGGAGCTGTTAACAATTGGATATTTGG
ACAGCGCAATGCTAGCAGCCTTGATGCAGAACGGCATGAACGTGAGCTTG
GGCACGCCATTCTCCTTGGCCACTAACTGCAGTTGGTTACGGAATTGCAT
CAACTGGGTCATGTCGATTTCGTCGCTGTAAGCAAAATGGGGGATTTTCA
GGGATTCCGTCATCGATTTCAGCATGGCCTTGCGCACTCCCTTGAGCACT
TCGACGCGATCAGCGGGCACAGAAACACTTGCTGCTCCACTTGGAGCAGC
ACTAGGCGTTTTCGCCAATAGTGTGGGATGTGGAACGTTAGTACCGGGAG
GAACTTGGCCCAGAAACTCCAGAATATCACCCTTAAGCACACGACCATTC
TTTCCCGTTGCTGGCACCTTGGCCAGATCCAACTGGTGTTCCTTGGCCAG
ACGACGAACCGAGGGCGTGGCGGGTATGATCACACGACCTTCTGTGGGCG
TCG
BO10245.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-PA | 1389 | CG5599-RA | 452..1386 | 953..19 | 4675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 10:04:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-RA | 1872 | CG5599-RA | 554..1488 | 953..19 | 4675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 10:04:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15087552..15087951 | 649..250 | 2000 | 100 | Minus |
X | 23542271 | X | 15087182..15087486 | 953..649 | 1525 | 100 | Minus |
X | 23542271 | X | 15088014..15088245 | 250..19 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 10:04:18 has no hits.
BO10245.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:01 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-PA | 452..1389 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:54 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-PA | 452..1389 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 16:23:46 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 554..1488 | 19..953 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 12:01:14 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 554..1488 | 19..953 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 12:01:14 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15087182..15087486 | 649..953 | 100 | -> | Minus |
X | 15087553..15087951 | 250..648 | 100 | -> | Minus |
X | 15088015..15088245 | 19..249 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 16:23:46 Download gff for
BO10245.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14981215..14981519 | 649..953 | 100 | -> | Minus |
arm_X | 14981586..14981984 | 250..648 | 100 | -> | Minus |
arm_X | 14982048..14982278 | 19..249 | 100 | | Minus |
BO10245.5prime Sequence
857 bp (770 high quality bases) assembled on 2006-04-19
> BO10245.5prime
GAAGTTATCAGTCGACATGGCAACACACCTCCTCCGAAACGGCGCTACAT
GTTGGCTGCTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGC
CTGCATGTGACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGA
CATTGGCGAGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAG
AGGGCGACACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGAC
AAGGCATCGGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGAT
TCACCACAAAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATT
TCGATGTGGTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCT
TCCTCCTCCACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCA
ATCAGCTGAAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCG
CCACGCCCTCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCC
AAGGTGCCAGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCT
GGAGTTTCTGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACAC
TATTGGCGAAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCT
GTGCCCGCTGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCT
GAAATCGATGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACG
AAATCGACATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTG
GGCAAGG
BO10245.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-PA | 1389 | CG5599-RA | 1..841 | 17..857 | 4180 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-RA | 1872 | CG5599-RA | 103..943 | 17..857 | 4190 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15086802..15087486 | 88..772 | 3425 | 100 | Plus |
X | 23542271 | X | 15087552..15087637 | 772..857 | 415 | 98.8 | Plus |
X | 23542271 | X | 15086227..15086303 | 17..93 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:20:18 has no hits.
BO10245.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:02 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:45:55 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-PA | 1..841 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 13:35:34 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 103..943 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:02:00 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 103..943 | 17..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:02:00 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15086227..15086298 | 17..88 | 100 | -> | Plus |
X | 15086803..15087486 | 89..772 | 100 | -> | Plus |
X | 15087553..15087637 | 773..857 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 13:35:34 Download gff for
BO10245.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14980260..14980331 | 17..88 | 100 | -> | Plus |
arm_X | 14980836..14981519 | 89..772 | 100 | -> | Plus |
arm_X | 14981586..14981670 | 773..857 | 98 | | Plus |
BO10245.complete Sequence
1420 bp assembled on 2007-10-17
GenBank Submission: FJ631692
> BO10245.complete
GAAGTTATCAGTCGACATGGCAACACACCTCCTCCGAAACGGCGCTACAT
GTTGGCTGCTCAGGAACTGCATTTCCCAACGTGCCGCGTTGAGACGCTGC
CTGCATGTGACCTCAAGCCTGGACAAGACGGTCTCCTTCAACCTCAGCGA
CATTGGCGAGGGAATCCGCGAGGTAACCGTCAAGGAGTGGTTCGTGAAAG
AGGGCGACACCGTGGAGCAGTTCGACAATCTCTGCGAGGTGCAATCGGAC
AAGGCATCGGTGACCATCACCAGTCGCTATGATGGCAAGATAACCAAGAT
TCACCACAAAATCGATGAGATTGCTCTGGTCGGCAAGCCTCTGCTCGATT
TCGATGTGGTGAATGAAGACGAAGATGAGCCGGAGGACTCTTCTTCCTCT
TCCTCCTCCACATCTTCCGATAGTTCAGCAAGCGAAAACGAGGAGAAGCA
ATCAGCTGAAGCATCTGCGACGCCCACAGAAGGTCGTGTGATCATACCCG
CCACGCCCTCGGTTCGTCGTCTGGCCAAGGAACACCAGTTGGATCTGGCC
AAGGTGCCAGCAACGGGAAAGAATGGTCGTGTGCTTAAGGGTGATATTCT
GGAGTTTCTGGGCCAAGTTCCTCCCGGTACTAACGTTCCACATCCCACAC
TATTGGCGAAAACGCCTAGTGCTGCTCCAAGTGGAGCAGCAAGTGTTTCT
GTGCCCGCTGATCGCGTCGAAGTGCTCAAGGGAGTGCGCAAGGCCATGCT
GAAATCGATGACGGAATCCCTGAAAATCCCCCATTTTGCTTACAGCGACG
AAATCGACATGACCCAGTTGATGCAATTCCGTAACCAACTGCAGTTAGTG
GCCAAGGAGAATGGCGTGCCCAAGCTCACGTTCATGCCGTTCTGCATCAA
GGCTGCTAGCATTGCGCTGTCCAAATATCCAATTGTTAACAGCTCCCTGG
ATTTGGCCAGCGAATCGCTGGTCTTCAAGGGTGCCCACAACATAAGCGTT
GCCATCGATACACCACAGGGTCTAGTGGTGCCGAATATTAAGAACTGCCA
GACAAAGACTATTATCGAGATTGCCAAGGATCTGAATGCACTGGTGGAGC
GCGGTAGGACTGGCTCCCTGTCTCCGGCAGACTTTGCCGATGGCACCTTC
TCGCTTTCCAACATAGGAGTGATTGGCGGTACCTACACACATCCTTGTAT
AATGGCGCCGCAGGTGGCCATCGGTGCTATGGGTAGGACCAAGGCGGTGC
CGCGTTTCAACGACAAGGATGAGGTGGTCAAGGCGTATGTGATGAGCGTA
AGCTGGTCCGCCGACCATCGCGTCATCGACGGCGTGACCATGGCCAGCTT
CTCCAACGTTTGGAAGCAGTATCTGGAGAATCCTGCCCTTTTCCTACTAC
ACGCAAGCTTTCTAGACCAT
BO10245.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-RA | 1389 | CG5599-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-RA | 1872 | CG5599-RA | 103..1488 | 17..1402 | 6930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15086802..15087486 | 88..772 | 3425 | 100 | Plus |
X | 23542271 | X | 15087552..15087951 | 772..1171 | 2000 | 100 | Plus |
X | 23542271 | X | 15088014..15088245 | 1171..1402 | 1160 | 100 | Plus |
X | 23542271 | X | 15086227..15086303 | 17..93 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:45:40 has no hits.
BO10245.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:56:01 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 1..1389 | 17..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:06:25 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 90..1475 | 17..1402 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:43:50 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 103..1488 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:38 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 90..1475 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:05 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5599-RA | 103..1488 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:05 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15086227..15086298 | 17..88 | 100 | -> | Plus |
X | 15086803..15087486 | 89..772 | 100 | -> | Plus |
X | 15087553..15087951 | 773..1171 | 100 | -> | Plus |
X | 15088015..15088245 | 1172..1404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:43:50 Download gff for
BO10245.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14980260..14980331 | 17..88 | 100 | -> | Plus |
arm_X | 14980836..14981519 | 89..772 | 100 | -> | Plus |
arm_X | 14981586..14981984 | 773..1171 | 100 | -> | Plus |
arm_X | 14982048..14982278 | 1172..1404 | 99 | | Plus |
BO10245.pep Sequence
Translation from 16 to 1420
> BO10245.pep
MATHLLRNGATCWLLRNCISQRAALRRCLHVTSSLDKTVSFNLSDIGEGI
REVTVKEWFVKEGDTVEQFDNLCEVQSDKASVTITSRYDGKITKIHHKID
EIALVGKPLLDFDVVNEDEDEPEDSSSSSSSTSSDSSASENEEKQSAEAS
ATPTEGRVIIPATPSVRRLAKEHQLDLAKVPATGKNGRVLKGDILEFLGQ
VPPGTNVPHPTLLAKTPSAAPSGAASVSVPADRVEVLKGVRKAMLKSMTE
SLKIPHFAYSDEIDMTQLMQFRNQLQLVAKENGVPKLTFMPFCIKAASIA
LSKYPIVNSSLDLASESLVFKGAHNISVAIDTPQGLVVPNIKNCQTKTII
EIAKDLNALVERGRTGSLSPADFADGTFSLSNIGVIGGTYTHPCIMAPQV
AIGAMGRTKAVPRFNDKDEVVKAYVMSVSWSADHRVIDGVTMASFSNVWK
QYLENPALFLLHASFLDH
BO10245.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:39:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5599-PA | 462 | CG5599-PA | 1..462 | 1..462 | 2348 | 100 | Plus |
CG5261-PF | 512 | CG5261-PF | 75..512 | 33..461 | 354 | 25.7 | Plus |
CG5261-PB | 512 | CG5261-PB | 75..512 | 33..461 | 354 | 25.7 | Plus |
CG5261-PA | 421 | CG5261-PA | 5..421 | 54..461 | 353 | 26.5 | Plus |
CG5261-PD | 489 | CG5261-PD | 75..489 | 33..461 | 345 | 26.3 | Plus |