Clone BO10250 Report

Search the DGRC for BO10250

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG8223-RA
Protein status:BO10250.pep: Imported from assembly
Sequenced Size:1510

Clone Sequence Records

BO10250.3prime Sequence

976 bp (882 high quality bases) assembled on 2006-04-19

> BO10250.3prime
ATGGTCTAGAAAGCTTGCGACGGCGGCACGCTTGGCCGGCGAGCACAGGG
CCTCAGCCTCCGAGCTGGGATCCTCCGGCTTCTTGCGCTTGATCAAATGT
GTGATGTCTGTGGGCTTGGCCGAACTGCTGCTAATGGTCGATGAGGAGGC
CGCCGCAGCACCTTTGGAGGAGGACGACGAAGAGCTGGCGGCTCCATTGG
CTGACGACGACGACGAGGAGGAGGCAGCAGCTGCATCACCACTGCTCATT
GGCTTGATGTAGCTATCCAGGGCAGCTCGCACTTCAGCAATGGTCTGGGC
CTGCATCTCTTCGATTTCCTGGATCTTGGCCAAAATCTCCTGCTTAGTTT
CCTCCAAATCCAACATATTGTTTCTGTCGCGCTCGCTAGGTTCGTCCTTG
CCCTTAATCTCGGCGATTTCCTCCTCGATCAACACGCTTGATTGACGCAG
TGCTGTCGCTCCTTCCTTGTTGAGTTGCTGCATCAAATAGGTCAGCCCGA
TCTTGTAATGCAACTCGGCCAAAGCACGTCGGTTTCTTGTGGGCAGCTCT
CCGTGGATCTTCAGTGCTTTCTCATAATCTTCGCGTGCCGCCTCTAGTAT
TCCATTCTCAAACTCAATGTTAGCCAGCTCAGTCTGAACCTCAGCCAAGT
AGGGGAGTCCACTGAGCCCTTGGCGCGAGAAGATCTGAGCAGCCGCCTCT
AGAATTTCCCAGGCCAACTGCAAACTTCCGCTAACTCCTTCCTCTTCTTC
GGGTTCTTCCTCTACAGCAGGTGCTGCACCATTGGAACAACTAGCTGTGA
CCTCACCATTCGATGTGCTCGGTCGCTCGTCATCGTTGACGGCAGCTCCG
CCACCGCCATTGCTGCTGCTGACCTCATCCACGCCGGTCGGTACCTTCTT
AGAGGGCTTTTCATCACTTTGAGCTTGCTCGGCTTCCCCGGTAGAGTCTG
CCTCATCGGACCCTTCCTTGATGGTG

BO10250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PA 1479 CG8223-RA 519..1476 976..19 4790 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 988..1945 976..19 4790 100 Minus
CG8223-RA 1999 CG8223-RA 734..1691 976..19 4790 100 Minus
CG34135-RC 7398 CG34135-RC 3552..3955 573..976 2020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:20:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752715..8753118 976..573 2020 100 Minus
3R 32079331 3R 8753180..8753458 573..295 1395 100 Minus
3R 32079331 3R 8753519..8753796 296..19 1390 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:20:39 has no hits.

BO10250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:12 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 519..1479 18..976 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:07 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 519..1479 18..976 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:48:22 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 734..1691 19..976 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:51:56 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 734..1691 19..976 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:51:56 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8752715..8753118 573..976 100 -> Minus
3R 8753181..8753458 295..572 100 -> Minus
3R 8753521..8753796 19..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:48:22 Download gff for BO10250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4578437..4578840 573..976 100 -> Minus
arm_3R 4578903..4579180 295..572 100 -> Minus
arm_3R 4579243..4579518 19..294 100   Minus

BO10250.5prime Sequence

867 bp (764 high quality bases) assembled on 2006-04-19

> BO10250.5prime
GAAGTTATCAGTCGTCATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GNGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGC

BO10250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PA 1479 CG8223-RA 1..851 17..867 4236 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 470..1320 17..867 4244 99.9 Plus
CG8223-RA 1999 CG8223-RA 216..1066 17..867 4244 99.9 Plus
CG34135-RC 7398 CG34135-RC 3623..4156 867..334 2659 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752514..8753047 334..867 2659 99.8 Plus
3R 32079331 3R 8752082..8752398 17..333 1585 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:53:02 has no hits.

BO10250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:14 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:08 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-PA 1..851 17..867 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 03:46:31 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 211..1066 12..867 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:33:02 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 211..1066 12..867 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:33:02 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8752077..8752398 12..333 99 -> Plus
3R 8752514..8753047 334..867 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 03:46:31 Download gff for BO10250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4577799..4578120 12..333 99 -> Plus
arm_3R 4578236..4578769 334..867 99   Plus

BO10250.complete Sequence

1510 bp assembled on 2011-06-28

GenBank Submission: KX797417

> BO10250.complete
GAAGTTATCAGTCGTCATGTCTGCTGAAGCCGAAGCAATCGTCACAACGG
CAACTGCCGATGTATCATCCCCAAGCAAGACAGTGGCTGTGGAGCCCGTT
GCTGCTGATACAACTCCGGACAATGCTCCGGCTGTGTCCACCGAGGGAAG
CGGAAAGGCAGAGCAGGAACGGGCAGAGAAAATACTTAAAGGCAAGGAGC
TGTTCAGCCAGGGATCGCGCAACTTCCTGGTCAAGAGCTACGACGAGGCA
GCTGACGAGCTGAGCCAGGTGTGCCAACTGTACGAGGAAGTCTACGGGGA
ACTGGCCGATGAGCTGGGTCAGCCCCTATTGCTCTATGCAAAGGCATTAA
TTGCAATGGCCTTGGACGAGAACAAAGTGATTGATGTGCCTGACGAGGCT
GCCGATGATGATGACGAGGATGTGGACGACGACGAGGAAGAAAGTGCCGA
AGATGGAGCGGCTAAGAAGGAGGAAAAGAAAGACACCAAGGAGGCAGCAA
ATGGTGCAAGCAGCTCTAACGGCAAGGAACTGGACACCATCAAGGAAGGG
TCCGATGAGGCAGACTCTACCGGGGAAGCCGAGCAAGCTCAAAGTGATGA
AAAGCCCTCTAAGAAGGTACCGACCGGCGTGGATGAGGTCAGCAGCAGCA
ATGGCGGTGGCGGAGCTGCCGTCAACGATGACGAGCGACCGAGCACATCG
AATGGTGAGGTCACAGCTAGTTGTTCCAATGGTGCAGCACCTGCTGTAGA
GGAAGAACCCGAAGAAGAGGAAGGAGTTAGCGGAAGTTTGCAGTTGGCCT
GGGAAATTCTAGAGGCGGCTGCTCAGATCTTCTCGCGCCAAGGGCTCAGT
GGACTCCCCTACTTGGCTGAGGTTCAGACTGAGCTGGCTAACATTGAGTT
TGAGAATGGAATACTAGAGGCGGCACGCGAAGATTATGAGAAAGCACTGA
AGATCCACGGAGAGCTGCCCACAAGAAACCGACGTGCTTTGGCCGAGTTG
CATTACAAGATCGGGCTGACCTATTTGATGCAGCAACTCAACAAGGAAGG
AGCGACAGCACTGCGTCAATCAAGCGTGTTGATCGAGGAGGAAATCGCCG
AGATTAAGGGCAAGGACGAACCTAGCGAGCGCGACAGAAACAATATGTTG
GATTTGGAGGAAACTAAGCAGGAGATTTTGGCCAAGATCCAGGAAATCGA
AGAGATGCAGGCCCAGACCATTGCTGAAGTGCGAGCTGCCCTGGATAGCT
ACATCAAGCCAATGAGCAGTGGTGATGCAGCTGCTGCCTCCTCCTCGTCG
TCGTCGTCAGCCAATGGAGCCGCCAGCTCTTCGTCGTCCTCCTCCAAAGG
TGCTGCGGCGGCCTCCTCATCGACCATTAGCAGCAGTTCGGCCAAGCCCA
CAGACATCACACATTTGATCAAGCGCAAGAAGCCGGAGGATCCCAGCTCG
GAGGCTGAGGCCCTGTGCTCGCCGGCCAAGCGTGCCGCCGTCGCAAGCTT
TCTAGACCAT

BO10250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 1479 CG8223-PB 1..1476 17..1492 7380 100 Plus
CG8223-RA 1479 CG8223-PA 1..1476 17..1492 7380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-RB 2253 CG8223-RB 470..1945 17..1492 7380 100 Plus
CG8223-RA 1999 CG8223-RA 216..1691 17..1492 7380 100 Plus
CG34135-RC 7398 CG34135-RC 3552..4156 938..334 3025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8752514..8753118 334..938 3025 100 Plus
3R 32079331 3R 8752082..8752398 17..333 1585 100 Plus
3R 32079331 3R 8753180..8753458 938..1216 1395 100 Plus
3R 32079331 3R 8753519..8753796 1215..1492 1390 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:20:21 has no hits.

BO10250.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:35 Download gff for BO10250.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 208..1683 17..1494 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:20 Download gff for BO10250.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 216..1691 17..1494 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:44 Download gff for BO10250.complete
Subject Subject Range Query Range Percent Splice Strand
CG8223-RA 216..1691 17..1494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:44 Download gff for BO10250.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8752082..8752398 17..333 100 -> Plus
3R 8752514..8753118 334..938 100 -> Plus
3R 8753181..8753458 939..1216 100 -> Plus
3R 8753521..8753796 1217..1494 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:20 Download gff for BO10250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4577804..4578120 17..333 100 -> Plus
arm_3R 4578236..4578840 334..938 100 -> Plus
arm_3R 4578903..4579180 939..1216 100 -> Plus
arm_3R 4579243..4579518 1217..1494 99   Plus

BO10250.pep Sequence

Translation from 16 to 1510

> BO10250.pep
MSAEAEAIVTTATADVSSPSKTVAVEPVAADTTPDNAPAVSTEGSGKAEQ
ERAEKILKGKELFSQGSRNFLVKSYDEAADELSQVCQLYEEVYGELADEL
GQPLLLYAKALIAMALDENKVIDVPDEAADDDDEDVDDDEEESAEDGAAK
KEEKKDTKEAANGASSSNGKELDTIKEGSDEADSTGEAEQAQSDEKPSKK
VPTGVDEVSSSNGGGGAAVNDDERPSTSNGEVTASCSNGAAPAVEEEPEE
EEGVSGSLQLAWEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGIL
EAAREDYEKALKIHGELPTRNRRALAELHYKIGLTYLMQQLNKEGATALR
QSSVLIEEEIAEIKGKDEPSERDRNNMLDLEETKQEILAKIQEIEEMQAQ
TIAEVRAALDSYIKPMSSGDAAAASSSSSSSANGAASSSSSSSKGAAAAS
SSTISSSSAKPTDITHLIKRKKPEDPSSEAEALCSPAKRAAVASFLDH

BO10250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8223-PB 492 CG8223-PB 1..492 1..492 2415 100 Plus
CG8223-PA 492 CG8223-PA 1..492 1..492 2415 100 Plus
tn-PC 1517 CG15105-PC 490..817 140..473 166 23.9 Plus