Clone Sequence Records
BO10253.3prime Sequence
922 bp (751 high quality bases) assembled on 2006-04-19
> BO10253.3prime
ATGGTCTAGAAAGCTTGCGGAAATGTCTCTCAATGTGTTCGGCTTGGTGC
CGTCCATGTCGAAGCAGCGGCAGTTGCACGACGACACGGGGCACTCTGAA
TTTTGCTTGAACCACTGCATGATGTGCTCGGTGTGTCCGCCGTGGCGACA
GGTCTGACACCAGGAAAACCACTTTGAGAAGGGCTTGGTCTGCCAGCCGG
GCACGTCGGGCGTGGTGGTCGGGGTCTCCCCATTGCTCATGTTCACCATT
GTGCCCATGTGCATTAGGCAGAGCGAGCAGCGGGGCAGGGGTTTCCGGCA
GCTGGGGCATGAGGAGAGCCTGTTGGTGCTGGTGGTGGTGCTCCGTGGAC
GCGGCTCGTCCAGCAAGGCGTTGGACACAGACTTGCCGCAAAAGTTGCAC
GACAGAAATACGGTGCGGGAACTGCGGGAGGATGGGCGGATGCTCTCGAT
CTTGATGTCCAGCTCGGCCCGCTTCTCCCACAAGCCCCAGCTATTGAGGT
GATCCAAGTAGCTGGCGATCCAGTACTGGATGCGCTTGTCCTCGAAAAGC
TCTTGCCGGAAGTAGTTAATGGCCACCAGGGCTACCGTCTGCACATCGAA
GCTGGTGTCCATATAGGACTGCAGTATATCGATTCCGTCCTGCGACTCTC
CAGTGAGCAACAAGCCATTTAGATCGCCACCATCTATGGCCGCCTGGATT
TGCTGCGCAACATAGTCAGCCAGCTTGGTCTCCGATAGATATTTGCAGGC
GAAGGCCATGCGGTCTGATAACGAAACGCCTTCCTCTTTGAGCACTGCAT
CAAAATTGTCCTTCTCCATCGTTAGAAAGGAGAAGACAGCCCTTAAGTGT
GGATCGTGTATCTGCATGTTGGCGCTGGATCGCTGATTCCGCACGTGNAA
CTGCAGCGATCTGCATTGAACT
BO10253.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7074-PA | 2604 | mio-RA | 1728..2601 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2956 | CG7074-RA | 1836..2738 | 920..19 | 4479 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2219775..2220259 | 590..106 | 2425 | 100 | Minus |
| 2L | 23513712 | 2L | 2219384..2219716 | 920..589 | 1604 | 99.4 | Minus |
| 2L | 23513712 | 2L | 2220320..2220407 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:57:25 has no hits.
BO10253.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:19 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-PA | 1696..2604 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:15 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7074-PA | 1696..2604 | 18..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 10:16:57 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 1833..2746 | 9..922 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:28 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 1833..2746 | 9..922 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:28 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2220320..2220415 | 9..106 | 95 | | Minus |
| 2L | 2219381..2219716 | 589..922 | 99 | -> | Minus |
| 2L | 2219777..2220258 | 107..588 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 10:16:57 Download gff for
BO10253.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2219381..2219716 | 589..922 | 99 | -> | Minus |
| arm_2L | 2219777..2220258 | 107..588 | 100 | -> | Minus |
| arm_2L | 2220320..2220415 | 9..106 | 95 | | Minus |
BO10253.5prime Sequence
901 bp (833 high quality bases) assembled on 2006-04-19
> BO10253.5prime
GAAGTTATCAGTCGACATGAGCGGCAATACACACGGACTCAGCTGGTTTC
CACATTTTCCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATAC
GAAGTGCGCCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATAT
ATCCGTGAACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCG
TGGCCGCCTCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCG
GATGGCAAAGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTG
GGAGTACACACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACG
AGCTGGATGCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGAC
ACCTGCATCACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGC
CAACTTCTTCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAA
ATCATCGCACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTC
GATCTGAGGCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGT
GCAGGGACTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGG
ACTCGGTGATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGG
CAGATTCAGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAG
GACAAGCCTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCT
ACGACATCCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTA
AAACGACAGATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTT
T
BO10253.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7074-PA | 2604 | mio-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2956 | CG7074-RA | 138..1022 | 17..901 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 12:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2218174..2218514 | 561..901 | 1705 | 100 | Plus |
| 2L | 23513712 | 2L | 2217830..2218081 | 309..560 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 2217598..2217771 | 135..308 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 2217427..2217546 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 12:46:15 has no hits.
BO10253.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:20 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:17 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7074-PA | 1..885 | 17..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 14:02:55 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 128..1022 | 7..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 14:43:28 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 128..1022 | 7..901 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 14:43:28 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2217417..2217544 | 7..134 | 96 | -> | Plus |
| 2L | 2217598..2217771 | 135..308 | 100 | -> | Plus |
| 2L | 2217830..2218081 | 309..560 | 100 | -> | Plus |
| 2L | 2218174..2218514 | 561..901 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 14:02:55 Download gff for
BO10253.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2218174..2218514 | 561..901 | 100 | | Plus |
| arm_2L | 2217830..2218081 | 309..560 | 100 | -> | Plus |
| arm_2L | 2217417..2217544 | 7..134 | 96 | -> | Plus |
| arm_2L | 2217598..2217771 | 135..308 | 100 | -> | Plus |
BO10253.complete Sequence
2635 bp (2635 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631694
> BO10253.complete
GAAGTTATCAGTCGACATGAGCGGCAATACACACGGACTCAGCTGGTTTC
CACATTTTCCCGACAAATTCGTATCCTGGGGCCAGGAAATCCATTTATAC
GAAGTGCGCCGCAAAGATGATCACAGCCAAAAAAGTCGCCTGCCTTATAT
ATCCGTGAACTACCTCGCCAACGAGTCGCGCTATCAATATGCCCGCTGCG
TGGCCGCCTCCTACCACAGTGACCAGCCCATAATTGCAGTGGGTCTGGCG
GATGGCAAAGTCGGGATTTGCAACTTCCGGGACACCTACGACAGCAGCTG
GGAGTACACACCGCGTCAGCAGCGCATGTGCACCTGCCTCGCCTGGAACG
AGCTGGATGCCAATATCCTGGCCATTGGACACGATCGCCATCGAAATGAC
ACCTGCATCACCATCTGGGACATTGAGCGTGGAGTTCCCAAGGAGACGGC
CAACTTCTTCGGCGTCGGCGAGTCGGCCAACTCCATTTGCTGGGATCGAA
ATCATCGCACGGTCATTGCGGGAATGAGCCAGAAGATGATAAAGCTGTTC
GATCTGAGGCAGAGTAACGCCACCTGTCAAAGCATTCAAACAAAGACAGT
GCAGGGACTTTCCGTATCCCCCAATGGCAACTATCTCTGCAGCTATGTGG
ACTCGGTGATCACTCTGTGGGATCCGCGAAATATCAAGAGTCCCCTCAGG
CAGATTCAGTCCTCGAAAAACCATTTGCAGATCGCTTGGTGTCCGACCAG
GACAAGCCTGCTTTCCTCGCTGCAACGCGATTCCTCCTACATCACTCTCT
ACGACATCCGGAGTGTGGACACGGACAATTCCGGAGAGATCTACCACGTA
AAACGACAGATTAGCCCCTTTCCGGCTAGATACCAGCACAGTGGAAAGTT
TTCGTTTGTTAATTGCCTGTCGTGGCATTCGAGGGATTTCGAGAGAGCTC
TGCTTTTGGCAGATGCGCTGAACATCCTGGACTTTCGACTGCCAGCCACC
TTGCACACGGCGCACAGCAATCGCCGGAAATTGCCACTTCTGATGCAGCG
TCCGCTCTACACACCCGCCTCGCCGACTTCCACTGCGGCCACGCCCACTC
AGCAGCAGCCCACGAGCAGCTGCAGCACGAATAGCGGGAGTTCCCTGGAC
TTTAGCACTCCTGGTGGTTCGCCCTTCAATGTGGACCTGCTGAAACCGGA
ACTCTTTGAGCTGGATCTGGTGGACGAGACGCGTCAGCGCGCTCTAGAGG
ATTACGGCATCAAACCCGATAACAAGCGATTCGGCGAACTCCACTTGACA
CCGTATCTGCGAAATGTGTGGTCCACTTTGAACAATGTCTACAGCGAGGA
TCGACTGACGGGCTTAAAGGCCACTTTGGGCATTAACTTGGGACACACCT
CGGAGGCCTTGATGGCCAGCTCCCGCATTGAATCTCAGGTGCTCCAGTGG
CCAGAGGGCATCAACAACTCCAACAAACTGATATGCTACAGGAGTGAGCA
GCGCGACCTGGCCCTCCAACTTTGCGGTTGGGCCTTTGAGCAGGAGCTGG
ATCGCTTTATAGACCAGTTGTATGCAAACAAGGAGTACAGCCGGGCAGCC
ATGATCTGCGTGTTCCACTTGAAAATTTTCCATGCCTGCAACATCCTATC
GTCGGCGGCGGACAACATGAGGGATCCCAGCATGTACAGGATCACCGTCA
TCGCCTTGTCCAGTTTCAATGCAGATCGCTGCAGTTCCACGTGGCGGAAT
CAGCGATCCAGCGCCAACATGCAGATACACGATCCACACTTAAGGGCTGT
CTTCTCCTTTCTAACGATGGAGAAGGACAATTTTGATGCAGTGCTCAAAG
AGGAAGGCGTTTCGTTATCAGACCGCATGGCCTTCGCCTGCAAATATCTA
TCGGAGACCAAGCTGGCTGACTATGTTGCGCAGCAAATCCAGGCGGCCAT
AGATGGTGGCGATCTAAATGGCTTGTTGCTCACTGGAGAGTCGCAGGACG
GAATCGATATACTGCAGTCCTATATGGACACCAGCTTCGATGTGCAGACG
GTAGCCCTGGTGGCCATTAACTACTTCCGGCAAGAGCTTTTCGAGGACAA
GCGCATCCAGTACTGGATCGCCAGCTACTTGGATCACCTCAATAGCTGGG
GCTTGTGGGAGAAGCGGGCCGAGCTGGACATCAAGATCGAGAGCATCCGC
CCATCCTCCCGCAGTTCCCGCACCGTATTTCTGTCGTGCAACTTTTGCGG
CAAGTCTGTGTCCAACGCCTTGCTGGACGAGCCGCGTCCACGGAGCACCA
CCACCAGCACCAACAGGCTCTCCTCATGCCCCAGCTGCCGGAAACCCCTG
CCCCGCTGCTCGCTCTGCCTAATGCACATGGGCACAATGGTGAACATGAG
CAATGGGGAGACCCCGACCACCACGCCCGACGTGCCCGGCTGGCAGACCA
AGCCCTTCTCAAAGTGGTTTTCCTGGTGTCAGACCTGTCGCCACGGCGGA
CACACCGAGCACATCATGCAGTGGTTCAAGCAAAATTCAGAGTGCCCCGT
GTCGTCGTGCAACTGCCGCTGCTTCGACATGGACGGCACCAAGCCGAACA
CATTGAGAGACATTTCCGCAAGCTTTCTAGACCAT
BO10253.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2604 | CG7074-PA | 1..2601 | 17..2617 | 13005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-RA | 2956 | CG7074-RA | 138..2738 | 17..2617 | 13005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2218174..2219105 | 561..1492 | 4660 | 100 | Plus |
| 2L | 23513712 | 2L | 2219158..2219716 | 1489..2047 | 2795 | 100 | Plus |
| 2L | 23513712 | 2L | 2219775..2220259 | 2046..2530 | 2425 | 100 | Plus |
| 2L | 23513712 | 2L | 2217830..2218081 | 309..560 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 2217598..2217771 | 135..308 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 2217427..2217546 | 17..136 | 600 | 100 | Plus |
| 2L | 23513712 | 2L | 2220320..2220407 | 2530..2617 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:18:19 has no hits.
BO10253.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:18 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 1..2604 | 17..2618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:51 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 55..2673 | 7..2627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:09 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 138..2738 | 17..2619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:18 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 55..2673 | 7..2627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:23 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mio-RA | 138..2738 | 17..2619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:23 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2217830..2218081 | 309..560 | 100 | -> | Plus |
| 2L | 2217427..2217544 | 17..134 | 100 | -> | Plus |
| 2L | 2217598..2217771 | 135..308 | 100 | -> | Plus |
| 2L | 2218174..2219104 | 561..1491 | 100 | -> | Plus |
| 2L | 2219161..2219716 | 1492..2047 | 100 | -> | Plus |
| 2L | 2219777..2220258 | 2048..2529 | 100 | -> | Plus |
| 2L | 2220320..2220407 | 2530..2619 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:09 Download gff for
BO10253.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2217427..2217544 | 17..134 | 100 | -> | Plus |
| arm_2L | 2217598..2217771 | 135..308 | 100 | -> | Plus |
| arm_2L | 2217830..2218081 | 309..560 | 100 | -> | Plus |
| arm_2L | 2218174..2219104 | 561..1491 | 100 | -> | Plus |
| arm_2L | 2219161..2219716 | 1492..2047 | 100 | -> | Plus |
| arm_2L | 2219777..2220258 | 2048..2529 | 100 | -> | Plus |
| arm_2L | 2220320..2220407 | 2530..2619 | 97 | | Plus |
BO10253.pep Sequence
Translation from 16 to 2635
> BO10253.pep
MSGNTHGLSWFPHFPDKFVSWGQEIHLYEVRRKDDHSQKSRLPYISVNYL
ANESRYQYARCVAASYHSDQPIIAVGLADGKVGICNFRDTYDSSWEYTPR
QQRMCTCLAWNELDANILAIGHDRHRNDTCITIWDIERGVPKETANFFGV
GESANSICWDRNHRTVIAGMSQKMIKLFDLRQSNATCQSIQTKTVQGLSV
SPNGNYLCSYVDSVITLWDPRNIKSPLRQIQSSKNHLQIAWCPTRTSLLS
SLQRDSSYITLYDIRSVDTDNSGEIYHVKRQISPFPARYQHSGKFSFVNC
LSWHSRDFERALLLADALNILDFRLPATLHTAHSNRRKLPLLMQRPLYTP
ASPTSTAATPTQQQPTSSCSTNSGSSLDFSTPGGSPFNVDLLKPELFELD
LVDETRQRALEDYGIKPDNKRFGELHLTPYLRNVWSTLNNVYSEDRLTGL
KATLGINLGHTSEALMASSRIESQVLQWPEGINNSNKLICYRSEQRDLAL
QLCGWAFEQELDRFIDQLYANKEYSRAAMICVFHLKIFHACNILSSAADN
MRDPSMYRITVIALSSFNADRCSSTWRNQRSSANMQIHDPHLRAVFSFLT
MEKDNFDAVLKEEGVSLSDRMAFACKYLSETKLADYVAQQIQAAIDGGDL
NGLLLTGESQDGIDILQSYMDTSFDVQTVALVAINYFRQELFEDKRIQYW
IASYLDHLNSWGLWEKRAELDIKIESIRPSSRSSRTVFLSCNFCGKSVSN
ALLDEPRPRSTTTSTNRLSSCPSCRKPLPRCSLCLMHMGTMVNMSNGETP
TTTPDVPGWQTKPFSKWFSWCQTCRHGGHTEHIMQWFKQNSECPVSSCNC
RCFDMDGTKPNTLRDISASFLDH
BO10253.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mio-PA | 867 | CG7074-PA | 1..867 | 1..867 | 4645 | 100 | Plus |
