Clone BO10266 Report

Search the DGRC for BO10266

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:66
Vector:pDNR-Dual
Associated Gene/Transcriptsea-RA
Protein status:BO10266.pep: Imported from assembly
Sequenced Size:985

Clone Sequence Records

BO10266.3prime Sequence

872 bp (839 high quality bases) assembled on 2006-04-19

> BO10266.3prime
ATGGTCTAGAATGCTTGCCACCCACACCTTGTTGAACAGATCCATGAAGG
AGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAAT
CTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGAT
CTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCCT
GCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGCT
GCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCTT
CGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAGA
AGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCCC
TTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGTG
GGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAACT
TCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATACG
CCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTCG
GGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCCG
CTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAGA
CCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGCC
GTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTCA
CATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACCG
CCGGCGACGATGCCCTTAAAGG

BO10266.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 101..951 869..19 4255 100 Minus
CG6782-PC 954 CG6782-RC 101..951 869..19 4255 100 Minus
CG6782-PD 954 CG6782-RD 101..951 869..19 4255 100 Minus
CG6782-PE 954 CG6782-RE 101..951 869..19 4255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 538..1388 869..19 4255 100 Minus
sea-RE 1444 CG6782-RE 322..1172 869..19 4255 100 Minus
sea-RD 1660 CG6782-RD 538..1388 869..19 4255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560168..11560794 19..645 3135 100 Plus
3R 32079331 3R 11560852..11561077 644..869 1130 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:26:49 has no hits.

BO10266.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:43 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 99..954 15..872 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:49 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 99..954 15..872 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:49:28 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 222..1077 15..872 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:52 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 536..1391 15..872 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:52 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560165..11560792 15..643 99 <- Plus
3R 11560852..11561079 644..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:49:28 Download gff for BO10266.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385887..7386514 15..643 99 <- Plus
arm_3R 7386574..7386801 644..872 99   Plus

BO10266.5prime Sequence

936 bp (882 high quality bases) assembled on 2006-04-19

> BO10266.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGGCATCACCTTTTTGATCTACGACTC

BO10266.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6782-PA 954 CG6782-RA 1..920 17..936 4550 99.7 Plus
CG6782-PC 954 CG6782-RC 1..920 17..936 4550 99.7 Plus
CG6782-PD 954 CG6782-RD 1..920 17..936 4550 99.7 Plus
CG6782-PE 954 CG6782-RE 1..920 17..936 4550 99.7 Plus
CG6783-PC 474 CG6783-RC 370..474 16..120 525 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1357 9..936 4580 99.6 Plus
sea-RE 1444 CG6782-RE 214..1141 9..936 4580 99.6 Plus
sea-RD 1660 CG6782-RD 430..1357 9..936 4580 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560199..11560794 936..341 2950 99.7 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2015-02-13 00:29:42 has no hits.

BO10266.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:45 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PA 1..920 17..936 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:50 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6782-PE 1..920 17..936 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:28 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RC 116..1043 9..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:10 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
sea-RD 430..1357 9..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:10 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11560199..11560792 343..936 99 <- Minus
3R 11560852..11561185 9..342 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:28 Download gff for BO10266.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385921..7386514 343..936 99 <- Minus
arm_3R 7386574..7386907 9..342 99   Minus

BO10266.complete Sequence

985 bp assembled on 2011-06-28

> BO10266.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGGCAAGCATTCTAGACCAT

BO10266.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
sea-RE 954 CG6782-PE 1..951 17..967 4755 100 Plus
sea-RD 954 CG6782-PD 1..951 17..967 4755 100 Plus
sea-RC 954 CG6782-PC 1..951 17..967 4755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RC 1660 CG6783-RC 430..1388 9..967 4765 99.8 Plus
sea-RE 1444 CG6782-RE 214..1172 9..967 4765 99.8 Plus
sea-RD 1660 CG6782-RD 430..1388 9..967 4765 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11560168..11560794 967..341 3135 100 Minus
3R 32079331 3R 11560852..11561185 342..9 1640 99.4 Minus
Blast to na_te.dros performed on 2014-11-26 16:03:45 has no hits.

BO10266.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:59 Download gff for BO10266.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RD 433..1383 17..969 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:26 Download gff for BO10266.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RC 124..1074 17..969 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:22 Download gff for BO10266.complete
Subject Subject Range Query Range Percent Splice Strand
sea-RD 438..1388 17..969 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:22 Download gff for BO10266.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11560166..11560792 343..969 99 <- Minus
3R 11560852..11561177 17..342 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:26 Download gff for BO10266.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7385888..7386514 343..969 99 <- Minus
arm_3R 7386574..7386899 17..342 100   Minus

BO10266.pep Sequence

Translation from 16 to 985

> BO10266.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWVASILDH

BO10266.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:12
Subject Length Description Subject Range Query Range Score Percent Strand
sea-PE 317 CG6782-PE 1..317 1..317 1637 100 Plus
sea-PD 317 CG6782-PD 1..317 1..317 1637 100 Plus
sea-PC 317 CG6782-PC 1..317 1..317 1637 100 Plus
sea-PA 317 CG6782-PA 1..317 1..317 1637 100 Plus
GC1-PB 321 CG18347-PB 22..293 34..291 312 30.8 Plus