Clone Sequence Records
BO10266.3prime Sequence
872 bp (839 high quality bases) assembled on 2006-04-19
> BO10266.3prime
ATGGTCTAGAATGCTTGCCACCCACACCTTGTTGAACAGATCCATGAAGG
AGTCGTAGATCATAAAGGTGATGGCCACATCCAGGCACACACGACCTAAT
CTTGGCACGGTGCCCTTGTAGAAGGCGGCGGGACCTTCGTTCTTCAAGAT
CTCCACCGCACAGTGGGCAGTGTTCTTGTATTTCGATGCTTCCAGACCCT
GCATCCTCGTCTTGACCACATCCAGCGGCGTATTACCGAACACAGAGGCT
GCTCCGGCGATAGCTCCAAACACTCCAACCACCAACTTGGGCACTGGCTT
CGTGTGATCGTCACCCTTGTACAAATCCTTAAGGGACTCCAGTACGAAGA
AGCGAATGGCCTGGTTGGAGCCCTGTTTCAGAATGGTGGGCGTTAGGCCC
TTGTAGATACCAGAGATGCCCTCCGACTTGATGATTTGGCCAACGCCGTG
GGCGAATCCCCTGAACTTGGGATTGCCGCTGCGCTGATCGTTGATGAACT
TCACCTTGATGGTCTCCATCGGGGTCACTGCCACGATGGCCTCACATACG
CCAGCTCCTAAGCCGCAAAGCAACTTTCCGGAGTTGCTCAGTTGTCCTCG
GGAGTCCACGGCGTTCGATTTCAGGAATTCAAAAGCACCGAATCTCGCCG
CTGACTTAGGAATGCTGCCGTAGACGAGCACACTGAGACCTCGGTAGAGA
CCCAGGAATCCACGTTCTCCCACCGTCTTCTTAACGCAATCAAAGATGCC
GTTGTACTTCTTCGCCGCTCCCTTCTCGTCCAGCTGCAGTTGTGTCTTCA
CATACTCGGTGGGATAGGTGATGCAGATCTCGATGCCGCCCGTAATACCG
CCGGCGACGATGCCCTTAAAGG
BO10266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 101..951 | 869..19 | 4255 | 100 | Minus |
CG6782-PC | 954 | CG6782-RC | 101..951 | 869..19 | 4255 | 100 | Minus |
CG6782-PD | 954 | CG6782-RD | 101..951 | 869..19 | 4255 | 100 | Minus |
CG6782-PE | 954 | CG6782-RE | 101..951 | 869..19 | 4255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:26:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 538..1388 | 869..19 | 4255 | 100 | Minus |
sea-RE | 1444 | CG6782-RE | 322..1172 | 869..19 | 4255 | 100 | Minus |
sea-RD | 1660 | CG6782-RD | 538..1388 | 869..19 | 4255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560168..11560794 | 19..645 | 3135 | 100 | Plus |
3R | 32079331 | 3R | 11560852..11561077 | 644..869 | 1130 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:26:49 has no hits.
BO10266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:43 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 99..954 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:49 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 99..954 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 19:49:28 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 222..1077 | 15..872 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:52 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 536..1391 | 15..872 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:52 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560165..11560792 | 15..643 | 99 | <- | Plus |
3R | 11560852..11561079 | 644..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 19:49:28 Download gff for
BO10266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385887..7386514 | 15..643 | 99 | <- | Plus |
arm_3R | 7386574..7386801 | 644..872 | 99 | | Plus |
BO10266.5prime Sequence
936 bp (882 high quality bases) assembled on 2006-04-19
> BO10266.5prime
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGGCATCACCTTTTTGATCTACGACTC
BO10266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6782-PA | 954 | CG6782-RA | 1..920 | 17..936 | 4550 | 99.7 | Plus |
CG6782-PC | 954 | CG6782-RC | 1..920 | 17..936 | 4550 | 99.7 | Plus |
CG6782-PD | 954 | CG6782-RD | 1..920 | 17..936 | 4550 | 99.7 | Plus |
CG6782-PE | 954 | CG6782-RE | 1..920 | 17..936 | 4550 | 99.7 | Plus |
CG6783-PC | 474 | CG6783-RC | 370..474 | 16..120 | 525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1357 | 9..936 | 4580 | 99.6 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1141 | 9..936 | 4580 | 99.6 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1357 | 9..936 | 4580 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560199..11560794 | 936..341 | 2950 | 99.7 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:29:42 has no hits.
BO10266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:34:45 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PA | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:46:50 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6782-PE | 1..920 | 17..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:59:28 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 116..1043 | 9..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:46:10 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 430..1357 | 9..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:46:10 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560199..11560792 | 343..936 | 99 | <- | Minus |
3R | 11560852..11561185 | 9..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:59:28 Download gff for
BO10266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385921..7386514 | 343..936 | 99 | <- | Minus |
arm_3R | 7386574..7386907 | 9..342 | 99 | | Minus |
BO10266.complete Sequence
985 bp assembled on 2011-06-28
> BO10266.complete
GAAGTTATCAGTCGACATGGATCGCTCCGCCTTCGCGTCCCTTGTCAGCC
CGTACCGCCGACGTCCGTGGATGACGGAGCACGGAGCGGCGGCTGCGGAC
AGCGGCCAGGTGGGCCTTAAGGGCATCGTCGCCGGCGGTATTACGGGCGG
CATCGAGATCTGCATCACCTATCCCACCGAGTATGTGAAGACACAACTGC
AGCTGGACGAGAAGGGAGCGGCGAAGAAGTACAACGGCATCTTTGATTGC
GTTAAGAAGACGGTGGGAGAACGTGGATTCCTGGGTCTCTACCGAGGTCT
CAGTGTGCTCGTCTACGGCAGCATTCCTAAGTCAGCGGCGAGATTCGGTG
CTTTTGAATTCCTGAAATCGAACGCCGTGGACTCCCGAGGACAACTGAGC
AACTCCGGAAAGTTGCTTTGCGGCTTAGGAGCTGGCGTATGTGAGGCCAT
CGTGGCAGTGACCCCGATGGAGACCATCAAGGTGAAGTTCATCAACGATC
AGCGCAGCGGCAATCCCAAGTTCAGGGGATTCGCCCACGGCGTTGGCCAA
ATCATCAAGTCGGAGGGCATCTCTGGTATCTACAAGGGCCTAACGCCCAC
CATTCTGAAACAGGGCTCCAACCAGGCCATTCGCTTCTTCGTACTGGAGT
CCCTTAAGGATTTGTACAAGGGTGACGATCACACGAAGCCAGTGCCCAAG
TTGGTGGTTGGAGTGTTTGGAGCTATCGCCGGAGCAGCCTCTGTGTTCGG
TAATACGCCGCTGGATGTGGTCAAGACGAGGATGCAGGGTCTGGAAGCAT
CGAAATACAAGAACACTGCCCACTGTGCGGTGGAGATCTTGAAGAACGAA
GGTCCCGCCGCCTTCTACAAGGGCACCGTGCCAAGATTAGGTCGTGTGTG
CCTGGATGTGGCCATCACCTTTATGATCTACGACTCCTTCATGGATCTGT
TCAACAAGGTGTGGGTGGCAAGCATTCTAGACCAT
BO10266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-RE | 954 | CG6782-PE | 1..951 | 17..967 | 4755 | 100 | Plus |
sea-RD | 954 | CG6782-PD | 1..951 | 17..967 | 4755 | 100 | Plus |
sea-RC | 954 | CG6782-PC | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RC | 1660 | CG6783-RC | 430..1388 | 9..967 | 4765 | 99.8 | Plus |
sea-RE | 1444 | CG6782-RE | 214..1172 | 9..967 | 4765 | 99.8 | Plus |
sea-RD | 1660 | CG6782-RD | 430..1388 | 9..967 | 4765 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:03:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11560168..11560794 | 967..341 | 3135 | 100 | Minus |
3R | 32079331 | 3R | 11560852..11561185 | 342..9 | 1640 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:03:45 has no hits.
BO10266.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:15:59 Download gff for
BO10266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 433..1383 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:26 Download gff for
BO10266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RC | 124..1074 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:22 Download gff for
BO10266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sea-RD | 438..1388 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:22 Download gff for
BO10266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11560166..11560792 | 343..969 | 99 | <- | Minus |
3R | 11560852..11561177 | 17..342 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:26 Download gff for
BO10266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7385888..7386514 | 343..969 | 99 | <- | Minus |
arm_3R | 7386574..7386899 | 17..342 | 100 | | Minus |
BO10266.pep Sequence
Translation from 16 to 985
> BO10266.pep
MDRSAFASLVSPYRRRPWMTEHGAAAADSGQVGLKGIVAGGITGGIEICI
TYPTEYVKTQLQLDEKGAAKKYNGIFDCVKKTVGERGFLGLYRGLSVLVY
GSIPKSAARFGAFEFLKSNAVDSRGQLSNSGKLLCGLGAGVCEAIVAVTP
METIKVKFINDQRSGNPKFRGFAHGVGQIIKSEGISGIYKGLTPTILKQG
SNQAIRFFVLESLKDLYKGDDHTKPVPKLVVGVFGAIAGAASVFGNTPLD
VVKTRMQGLEASKYKNTAHCAVEILKNEGPAAFYKGTVPRLGRVCLDVAI
TFMIYDSFMDLFNKVWVASILDH
BO10266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:48:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sea-PE | 317 | CG6782-PE | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PD | 317 | CG6782-PD | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PC | 317 | CG6782-PC | 1..317 | 1..317 | 1637 | 100 | Plus |
sea-PA | 317 | CG6782-PA | 1..317 | 1..317 | 1637 | 100 | Plus |
GC1-PB | 321 | CG18347-PB | 22..293 | 34..291 | 312 | 30.8 | Plus |