Clone BO10274 Report

Search the DGRC for BO10274

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:74
Vector:pDNR-Dual
Associated Gene/Transcripttw-RA
Protein status:BO10274.pep: validated full length
Sequenced Size:2329

Clone Sequence Records

BO10274.3prime Sequence

873 bp (872 high quality bases) assembled on 2006-04-19

> BO10274.3prime
ATGGTCTAGAAAGCTTGCGAACTCCCAGGTAGAAAGCCACTTGAGATTGT
ACATTGTAGAGTTCGGCTCGTTGGCTAGAGGACCACTCATTCCGTAAGCA
AGTGGCGAGAAGGCGGCAAAACTATACACCAGGATCGAGAGAACCAGTCC
GAGGATAACGTGGTGAATCCATTTGGGCAGAACCCTCAAAATGTAGTTGT
ACATAACGCCCGTCAGCAAGGAGTTGAAGATCAAGGCCGGAAAATAGTGG
TGGAAGTAGAGCACCCGTCCCATCGCCCAGAAGGGCAAATAGTGGAGCAT
CCAGCCCAGAAAAAGCCAGGCGGCCGCCCTTAAGGACTGCGCCGGGTTGG
GTGCCTCCGGGGACCCACTGGGAACTGCCTTTGGGACTATCTCCTTCGCC
GGAGTACAACAACTGCAGATGTCCGTGGTGGAGTGCTCACTCTCCTCGTC
CTGGGCCACTGTTTCCGAATCGGGAACTTGGGCTTGATTTTGGGCCGCCG
ATCGGGCGAAGCCAGCTCTTCTTTGCTGAACAACTGCGTTGCACAGGAAA
ACCGTGACGAAAAGGGCCAGGAAAACCAGATTACTCCACCAAATCAACGG
GTTTCCCAGCAAGTAGATGCGGTAACTGCTGCCGGAGAAGAACTGGCCCC
TGTAGTTGATTGGCCACTGCCAGGGTCTGCTGGTGACCTCGCCTTCTTTG
GGCTTGAGTCCTGCGTTTCCCTGCAGCATTACGGCGTGGGATTCGAGGAA
GCGGGCAAAGAAGCCGGGCGCATACACGCTAAAGCTTACACTGGGCATCA
ACTTGTGCTCGTTGTCCTCGACGTTCCACTGCGAGTTCTTGTCGCGCACG
TTGGGATTGCATGACACCTCCTG

BO10274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12311-PA 2298 Pomt2-RA 1441..2295 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 1600..2454 873..19 4275 100 Minus
tw-RB 2840 CG12311-RB 1600..2454 873..19 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 787085..787525 649..209 2205 100 Minus
X 23542271 X 787638..787829 210..19 960 100 Minus
X 23542271 X 786874..787023 797..648 750 100 Minus
X 23542271 X 786734..786809 873..798 380 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:57:19 has no hits.

BO10274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:00 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
Pomt2-PA 1441..2298 18..873 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:11 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12311-PA 1441..2298 18..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 14:12:29 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 1600..2459 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:36:40 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 1600..2459 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:36:40 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
X 787086..787524 210..648 100 -> Minus
X 787639..787834 11..209 97   Minus
X 786734..786809 798..873 100 -> Minus
X 786874..787022 649..797 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 14:12:29 Download gff for BO10274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 680767..680842 798..873 100 -> Minus
arm_X 680907..681055 649..797 100 -> Minus
arm_X 681119..681557 210..648 100 -> Minus
arm_X 681672..681867 11..209 97   Minus

BO10274.5prime Sequence

912 bp (873 high quality bases) assembled on 2006-04-19

> BO10274.5prime
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCCGCAGCGCAACGG
AGATGGGGTCTA

BO10274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12311-PA 2298 Pomt2-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:06:18
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 160..1055 17..912 4420 99.7 Plus
tw-RB 2840 CG12311-RB 160..1055 17..912 4420 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 785716..786119 509..912 1915 98.3 Plus
X 23542271 X 784905..785015 17..127 555 100 Plus
X 23542271 X 785547..785655 401..509 545 100 Plus
X 23542271 X 785386..785492 294..400 535 100 Plus
X 23542271 X 785233..785318 210..295 430 100 Plus
X 23542271 X 785089..785173 126..210 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:06:16 has no hits.

BO10274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:00 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
Pomt2-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:13 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12311-PA 1..895 17..911 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:28:07 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..1054 17..911 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:41 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..1054 17..911 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:41 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
X 784905..785014 17..126 100 -> Plus
X 785090..785173 127..210 100 -> Plus
X 785234..785318 211..295 100 -> Plus
X 785388..785492 296..400 100 -> Plus
X 785547..785655 401..509 100 -> Plus
X 785717..786118 510..911 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:28:07 Download gff for BO10274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 678938..679047 17..126 100 -> Plus
arm_X 679123..679206 127..210 100 -> Plus
arm_X 679267..679351 211..295 100 -> Plus
arm_X 679421..679525 296..400 100 -> Plus
arm_X 679580..679688 401..509 100 -> Plus
arm_X 679750..680151 510..911 99   Plus

BO10274.complete Sequence

2329 bp (2329 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631695

> BO10274.complete
GAAGTTATCAGTCGACATGGCAGCAAGTGTTGTTAAAACCCCCAAGTGCC
CCAGACGAGGATCTGTCAAAGATGTGGCCCAAAACGCACCTAGAACAGCA
CCCACATCTAGCAAAGAGGCCAATTGGAACTGGTGGCTTCTCCTGGCTAC
CGTCTTCCTGGTGACCTTCGCCACCCGCTTCTATAAGGTCACCGAGCCGG
ATCACATATGTTGGGATGAGACGCACTTTGGCAAGATGGGCAGTTGGTAC
ATTAACAGAACCTTTTTTTTCGATGTCCATCCACCGCTAGGAAAGATGCT
CATTGGCCTCTCTGGCTACTTGACGGGCTACAATGGAACGTTTCCGTTTG
AGAAGCCAGGTGACAAGTACAACGAGACGCGGTACCAGGGCATGCGATAT
TTCTGCACCACACTGGGAGCTCTGATCATGCCCATGGGATTCGATACTGT
CTACGATTTGACCCGTTCCCATGAAGCTGCCTTGCTTGCGGCTGCCTATC
TTATTTTCGATGTGGGGCTCTTGACCCTGAACCAGTACATCCTGCTGGAC
CCCATTCTGTTATTCTTCATGATGGCCTCCGTCTGGGGCATGGTCAAGGT
ATCGAAGTCCACGGCCTCCGGAGGATCGTACGGTCTACGCTGGTGGCTCT
GGCTCTTCCTCACCGGCACCATGTTGTCCTGCACGATTAGCGTTAAGTTC
GTGGGTCTGTTTGTGGTGCTGCTGGTCGGTCTGCATACAGCCACTGAACT
GTGGCTCATCCTCGGCGATTTGGGGCAGCCCATTTTGGAGACTGTTAAGC
AGTTGGCCTGCCGGGCCATCACCCTGATTGTCTGGCCCGTTCTCCTCTAC
ATCCTGTTCTTCTACATTCACCTGAGTGTCCTTAACCGCAGCGGCAACGG
AGATGGGTTCTATAGTTCGGCCTTTCAGTCCAGGCTGATCGGCAACTCCC
TATATAATGCCAGCATGCCCAGAGATGTCGCCTACGGATCGCTAGTGACA
ATCAAGAACCACAAGACGGGCGGAGGCTACCTGCACTCGCATCATCACCT
GTATCCCAAGGGATCTGGCGCTAGGCAGCAGCAGGTTACCACTTACACCC
ACAAGGACGAGAACAACAAGTGGCTAATCAGGCCGCACAACAAGCCGGGT
CCACCAAAGGGCAAGGTACAGATCCTCCGGCACGGGGACCTCGTCCGCCT
GACTCACATGGCGACCAGGAGAAATCTGCATTCCCACAACGAACCTGCAC
CCATGACCAAGAAGCATTTGCAGGTCACAGGCTATGGCGAGTTGGGACTA
GGCGATGCCAACGACGTCTGGCGCGTGTTGATTGTGGGCGGCAAGGTCAA
CGAAACGGTACACACGGTCACTTCCCGTCTCAAGTTCATCCACCTGCTGC
AGAACTGCGCCCTGACCTCCAGTGGGAAGCAGCTACCGAAATGGGGGTTC
GAACAGCAGGAGGTGTCATGCAATCCCAACGTGCGCGACAAGAACTCGCA
GTGGAACGTCGAGGACAACGAGCACAAGTTGATGCCCAGTGTAAGCTTTA
GCGTGTATGCGCCCGGCTTCTTTGCCCGCTTCCTCGAATCCCACGCCGTA
ATGCTGCAGGGAAACGCAGGACTCAAGCCCAAAGAAGGCGAGGTCACCAG
CAGACCCTGGCAGTGGCCAATCAACTACAGGGGCCAGTTCTTCTCCGGCA
GCAGTTACCGCATCTACTTGCTGGGAAACCCGTTGATTTGGTGGAGTAAT
CTGGTTTTCCTGGCCCTTTTCGTCACGGTTTTCCTGTGCAACGCAGTTGT
TCAGCAAAGAAGAGCTGGCTTCGCCCGATCGGCGGCCCAAAATCAAGCCC
AAGTTCCCGATTCGGAAACAGTGGCCCAGGACGAGGAGAGTGAGCACTCC
ACCACGGACATCTGCAGTTGTTGTACTCCGGCGAAGGAGATAGTCCCAAA
GGCAGTTCCCAGTGGGTCCCCGGAGGCACCCAACCCGGCGCAGTCCTTAA
GGGCGGCCGCCTGGCTTTTTCTGGGCTGGATGCTCCACTATTTGCCCTTC
TGGGCGATGGGACGGGTGCTCTACTTCCACCACTATTTTCCGGCCTTGAT
CTTCAACTCCTTGCTGACGGGCGTTATGTACAACTACATTTTGAGGGTTC
TGCCCAAATGGATTCACCACGTTATCCTCGGACTGGTTCTCTCGATCCTG
GTGTATAGTTTTGCCGCCTTCTCGCCACTTGCTTACGGAATGAGTGGTCC
TCTAGCCAACGAGCCGAACTCTACAATGTACAATCTCAAGTGGCTTTCTA
CCTGGGAGTTCGCAAGCTTTCTAGACCAT

BO10274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2298 CG12311-PA 1..2295 17..2311 11475 100 Plus
tw-RB 2298 CG12311-PB 1..2295 17..2311 11475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
tw-RA 2671 CG12311-RA 160..2454 17..2311 11475 100 Plus
tw-RB 2840 CG12311-RB 160..2454 17..2311 11475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 785716..786498 509..1291 3915 100 Plus
X 23542271 X 787085..787525 1681..2121 2205 100 Plus
X 23542271 X 786567..786809 1290..1532 1215 100 Plus
X 23542271 X 787638..787829 2120..2311 960 100 Plus
X 23542271 X 786874..787023 1533..1682 750 100 Plus
X 23542271 X 784905..785015 17..127 555 100 Plus
X 23542271 X 785547..785655 401..509 545 100 Plus
X 23542271 X 785386..785492 294..400 535 100 Plus
X 23542271 X 785233..785318 210..295 430 100 Plus
X 23542271 X 785089..785173 126..210 425 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:49:00 has no hits.

BO10274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:58:19 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RA 1..2298 17..2312 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:15:53 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RA 115..2414 17..2319 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:35 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..2454 17..2313 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:58:20 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RA 115..2414 17..2319 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:18 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
tw-RB 160..2454 17..2313 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:18 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
X 787639..787829 2121..2313 98   Plus
X 784905..785014 17..126 100 -> Plus
X 785090..785173 127..210 100 -> Plus
X 785234..785318 211..295 100 -> Plus
X 785388..785492 296..400 100 -> Plus
X 785547..785655 401..509 100 -> Plus
X 785717..786498 510..1291 100 -> Plus
X 786569..786809 1292..1532 100 -> Plus
X 786874..787022 1533..1681 100 -> Plus
X 787086..787524 1682..2120 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:35 Download gff for BO10274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 680602..680842 1292..1532 100 -> Plus
arm_X 680907..681055 1533..1681 100 -> Plus
arm_X 678938..679047 17..126 100 -> Plus
arm_X 679123..679206 127..210 100 -> Plus
arm_X 679267..679351 211..295 100 -> Plus
arm_X 679421..679525 296..400 100 -> Plus
arm_X 679580..679688 401..509 100 -> Plus
arm_X 679750..680531 510..1291 100 -> Plus
arm_X 681119..681557 1682..2120 100 -> Plus
arm_X 681672..681862 2121..2313 98   Plus

BO10274.pep Sequence

Translation from 16 to 2329

> BO10274.pep
MAASVVKTPKCPRRGSVKDVAQNAPRTAPTSSKEANWNWWLLLATVFLVT
FATRFYKVTEPDHICWDETHFGKMGSWYINRTFFFDVHPPLGKMLIGLSG
YLTGYNGTFPFEKPGDKYNETRYQGMRYFCTTLGALIMPMGFDTVYDLTR
SHEAALLAAAYLIFDVGLLTLNQYILLDPILLFFMMASVWGMVKVSKSTA
SGGSYGLRWWLWLFLTGTMLSCTISVKFVGLFVVLLVGLHTATELWLILG
DLGQPILETVKQLACRAITLIVWPVLLYILFFYIHLSVLNRSGNGDGFYS
SAFQSRLIGNSLYNASMPRDVAYGSLVTIKNHKTGGGYLHSHHHLYPKGS
GARQQQVTTYTHKDENNKWLIRPHNKPGPPKGKVQILRHGDLVRLTHMAT
RRNLHSHNEPAPMTKKHLQVTGYGELGLGDANDVWRVLIVGGKVNETVHT
VTSRLKFIHLLQNCALTSSGKQLPKWGFEQQEVSCNPNVRDKNSQWNVED
NEHKLMPSVSFSVYAPGFFARFLESHAVMLQGNAGLKPKEGEVTSRPWQW
PINYRGQFFSGSSYRIYLLGNPLIWWSNLVFLALFVTVFLCNAVVQQRRA
GFARSAAQNQAQVPDSETVAQDEESEHSTTDICSCCTPAKEIVPKAVPSG
SPEAPNPAQSLRAAAWLFLGWMLHYLPFWAMGRVLYFHHYFPALIFNSLL
TGVMYNYILRVLPKWIHHVILGLVLSILVYSFAAFSPLAYGMSGPLANEP
NSTMYNLKWLSTWEFASFLDH

BO10274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
tw-PA 765 CG12311-PA 1..765 1..765 4125 100 Plus
tw-PB 765 CG12311-PB 1..765 1..765 4125 100 Plus
rt-PA 886 CG6097-PA 179..753 45..598 677 30 Plus
CG11999-PA 216 CG11999-PA 44..139 339..438 161 38.6 Plus