Clone Sequence Records
BO10277.3prime Sequence
965 bp (843 high quality bases) assembled on 2006-04-19
> BO10277.3prime
ATGGTCTAGAAAGCTTGCGCCCGTTGATTGGCAGACACTTTCCCAGACCC
TAAGCTTCTGCAGCTCCGGCAGCTCCATCATCTTAATGTTCTCCGAGATG
TTGAGGCACTCCAAAGCGGATTTGCTGTTGAGTGGCTTCCATTCTTTGGC
TCGCGGAAGCTGATCCTGGATGAGCTTGCAATTAGGATTCGATGTCCTCG
CGAAGCTTGTCAACATGTCAATCATCCTCTCGATGGTGAGGAACTCGGGC
GTGTGCTTGTCCAGCTTCCAGGAGAAGTCGCCGTACCACAGGTAGGAGTG
ATCATCGACGTGGGCTACGCCCCGCAACTTGTCACCGCAGTACTTCAAAC
GCTGGTGATTGAACGTGGGAGAGTCAAAATCGAATCGATAGAGGTATGTG
GAAGCACTGGAGCTCTTTACACGGGATCTCAGCGTTTTAAGAATGGGATG
CCAAAACACTTTATAGCTGGCGTACTCACAGTACGCTTTTAAGGACTCTG
GCGACATGGCAGAAGGATCATTACCGCCAAAGTGGGTCTCCTGGAGTCGC
TGGCCCAGATGTCGAGCTAGAGCCTGGGGCAGATTACGCTTCACATCCAG
TGGCAGCATGTGCTCGGGTTCTTTTTTCAGGCTGGTCAGCAAGTACGGAG
CCATTTGGACGCGGGCGTACATCAGCAAGCCCTCGAAGGAAGTGCCGCTC
ATCAGTACCGGAATCCTATTTCCCCAGGCCTTGTCCAGCAGTTCCTGCGG
ATGATTGGGCAGCGCGCAGTGCTCCGTTTTATATGGCTCCACCATAGGTC
CAAACTGAAAGACGCAATCGTCCAGGTGCTCCTCTGCGCTAAGTAGATAT
GGTCGAACCAGTTTCTCTCCCGGCAATTTTTGCAGGAAGTCAAGAACATG
GCGTCGGTCACGTGCTCGGCACTTTCAATTCCCGGTTGACAGCTAACCGA
TGCGGTAGATTCTTG
BO10277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1257-PA | 1632 | alpha-Est3-RA | 757..1629 | 891..19 | 4365 | 100 | Minus |
| CG1257-PA | 1632 | alpha-Est3-RA | 714..756 | 933..891 | 165 | 95.3 | Minus |
| CG1257-PA | 1632 | alpha-Est3-RA | 681..712 | 965..934 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-RD | 1726 | CG1257-RD | 704..1652 | 965..19 | 4665 | 99.6 | Minus |
| alpha-Est3-RC | 1878 | CG1257-RC | 856..1804 | 965..19 | 4665 | 99.6 | Minus |
| alpha-Est3-RB | 1834 | CG1257-RB | 812..1760 | 965..19 | 4665 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7539563..7540055 | 475..965 | 2335 | 99.2 | Plus |
| 3R | 32079331 | 3R | 7539046..7539503 | 19..476 | 2290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:12:32 has no hits.
BO10277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:04 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1257-PA | 681..1632 | 18..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:17 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1257-PA | 681..1632 | 18..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:23:23 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RB | 812..1760 | 19..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:47 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RB | 812..1760 | 19..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:47 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7539046..7539501 | 19..474 | 100 | <- | Plus |
| 3R | 7539563..7540055 | 475..965 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:23:23 Download gff for
BO10277.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3364768..3365223 | 19..474 | 100 | <- | Plus |
| arm_3R | 3365285..3365777 | 475..965 | 99 | | Plus |
BO10277.5prime Sequence
882 bp (780 high quality bases) assembled on 2006-04-19
> BO10277.5prime
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATA
BO10277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1257-PA | 1632 | alpha-Est3-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-RD | 1726 | CG1257-RD | 22..889 | 15..882 | 4340 | 100 | Plus |
| alpha-Est3-RB | 1834 | CG1257-RB | 130..997 | 15..882 | 4340 | 100 | Plus |
| alpha-Est3-RA | 1825 | CG1257-RA | 121..988 | 15..882 | 4340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7539870..7540464 | 882..288 | 2975 | 100 | Minus |
| 3R | 32079331 | 3R | 7540868..7541134 | 289..23 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:07:02 has no hits.
BO10277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:05 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1257-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:18 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1257-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 16:25:35 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 110..987 | 5..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:32:36 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 110..987 | 5..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:32:36 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7539871..7540462 | 290..881 | 100 | <- | Minus |
| 3R | 7540868..7541134 | 23..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 16:25:35 Download gff for
BO10277.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3365593..3366184 | 290..881 | 100 | <- | Minus |
| arm_3R | 3366590..3366856 | 23..289 | 100 | | Minus |
BO10277.complete Sequence
1663 bp (1663 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631696
> BO10277.complete
GAAGTTATCAGTCGACATGGAGAGCTTGCAGGTGAACACGACCAGCGGAC
CGGTGCTCGGAAAACAATGTACAGGTGTCTACGGCGATGAGTACGTCAGC
TTCGAGCGGATTCCGTACGCGCAGCCGCCGGTGGGGCACCTCCGGTTCAT
GGCCCCCCTGCCCGTGGAGCCCTGGAGCCAGCCCTTGGATTGCACCAAGC
CCGGCCAGAAGCCACTCCAATTCAACCACTACTCCAAACAGCTGGAGGGC
GTCGAGGATTGCCTGTATCTGAATGTCTACGCCAAGGAGCTGGACTCACC
AAGGCCACTACCGCTGATTGTGTTCTTTTTTGGCGGTGGTTTCGAAAAGG
GCGACCCCACCAAGGAGCTGCATAGTCCTGACTACTTCATGATGCGCGAT
GTGGTCGTAGTCACAGTTTCCTATCGCGTGGGTCCCCTTGGATTCCTAAG
CCTGAACGATCCTGCCGTGGGAGTGCCCGGAAATGCTGGTCTGAAGGATC
AGCTGCTGGCAATGGAATGGATCAAGGAAAACGCAGAACGATTTAATGGC
GATCCCAAGAACGTGACCGCTTTTGGCGAAAGCGCCGGAGCCGCATCAGT
CCACTACTTGATGCTGAATCCCAAGGCTGAGGGTCTGTTCCACAAGGCCA
TACTGCAATCGGGCAATGTACTCTGCTCCTGGGCCCTCTGTACCATCAAG
AATCTACCGCATCGGTTAGCTGTCAACCTGGGAATGGAAAGTGCCGAGCA
CGTGACCGACGCCATGGTCTTGGACTTCCTGCAAAAATTGCCGGGAGAGA
AACTGGTTCGACCATATCTACTTAGCGCAGAGGAGCACCTGGACGATTGC
GTCTTTCAGTTTGGACCTATGGTGGAGCCATATAAAACGGAGCACTGCGC
GCTGCCCAATCATCCGCAGGAACTGCTGGACAAGGCCTGGGGAAATAGGA
TTCCGGTACTGATGAGCGGCACTTCCTTCGAGGGCTTGCTGATGTACGCC
CGCGTCCAAATGGCTCCGTACTTGCTGACCAGCCTGAAAAAAGAACCCGA
GCACATGCTGCCACTGGATGTGAAGCGTAATCTGCCCCAGGCTCTAGCTC
GACATCTGGGCCAGCGACTCCAGGAGACCCACTTTGGCGGTAATGATCCT
TCTGCCATGTCGCCAGAGTCCTTAAAAGCGTACTGTGAGTACGCCAGCTA
TAAAGTGTTTTGGCATCCCATTCTTAAAACGCTGAGATCCCGTGTAAAGA
GCTCCAGTGCTTCCACATACCTCTATCGATTCGATTTTGACTCTCCCACG
TTCAATCACCAGCGTTTGAAGTACTGCGGTGACAAGTTGCGGGGCGTAGC
CCACGTCGATGATCACTCCTACCTGTGGTACGGCGACTTCTCCTGGAAGC
TGGACAAGCACACGCCCGAGTTCCTCACCATCGAGAGGATGATTGACATG
TTGACAAGCTTCGCGAGGACATCGAATCCTAATTGCAAGCTCATCCAGGA
TCAGCTTCCGCGAGCCAAAGAATGGAAGCCACTCAACAGCAAATCCGCTT
TGGAGTGCCTCAACATCTCGGAGAACATTAAGATGATGGAGCTGCCGGAG
CTGCAGAAGCTTAGGGTCTGGGAAAGTGTCTGCCAATCAACGGGCGCAAG
CTTTCTAGACCAT
BO10277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-RD | 1632 | CG1257-PD | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| alpha-Est3-RB | 1632 | CG1257-PB | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| alpha-Est3-RA | 1632 | CG1257-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-RD | 1726 | CG1257-RD | 22..1652 | 15..1645 | 8155 | 100 | Plus |
| alpha-Est3-RB | 1834 | CG1257-RB | 130..1760 | 15..1645 | 8155 | 100 | Plus |
| alpha-Est3-RA | 1825 | CG1257-RA | 121..1751 | 15..1645 | 8155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7539563..7540464 | 1189..288 | 4510 | 100 | Minus |
| 3R | 32079331 | 3R | 7539046..7539503 | 1645..1188 | 2290 | 100 | Minus |
| 3R | 32079331 | 3R | 7540868..7541134 | 289..23 | 1335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:45:58 has no hits.
BO10277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:50:24 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 1..1632 | 17..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:22:09 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 106..1747 | 5..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:52 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 123..1751 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:50:25 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 106..1747 | 5..1645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:21 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha-Est3-RA | 123..1751 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:21 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7539044..7539501 | 1190..1647 | 99 | <- | Minus |
| 3R | 7539563..7540462 | 290..1189 | 100 | <- | Minus |
| 3R | 7540868..7541134 | 23..289 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:52 Download gff for
BO10277.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3364766..3365223 | 1190..1647 | 99 | <- | Minus |
| arm_3R | 3365285..3366184 | 290..1189 | 100 | <- | Minus |
| arm_3R | 3366590..3366856 | 23..289 | 100 | | Minus |
BO10277.pep Sequence
Translation from 16 to 1663
> BO10277.pep
MESLQVNTTSGPVLGKQCTGVYGDEYVSFERIPYAQPPVGHLRFMAPLPV
EPWSQPLDCTKPGQKPLQFNHYSKQLEGVEDCLYLNVYAKELDSPRPLPL
IVFFFGGGFEKGDPTKELHSPDYFMMRDVVVVTVSYRVGPLGFLSLNDPA
VGVPGNAGLKDQLLAMEWIKENAERFNGDPKNVTAFGESAGAASVHYLML
NPKAEGLFHKAILQSGNVLCSWALCTIKNLPHRLAVNLGMESAEHVTDAM
VLDFLQKLPGEKLVRPYLLSAEEHLDDCVFQFGPMVEPYKTEHCALPNHP
QELLDKAWGNRIPVLMSGTSFEGLLMYARVQMAPYLLTSLKKEPEHMLPL
DVKRNLPQALARHLGQRLQETHFGGNDPSAMSPESLKAYCEYASYKVFWH
PILKTLRSRVKSSSASTYLYRFDFDSPTFNHQRLKYCGDKLRGVAHVDDH
SYLWYGDFSWKLDKHTPEFLTIERMIDMLTSFARTSNPNCKLIQDQLPRA
KEWKPLNSKSALECLNISENIKMMELPELQKLRVWESVCQSTGASFLDH
BO10277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha-Est3-PD | 543 | CG1257-PD | 1..543 | 1..543 | 2917 | 100 | Plus |
| alpha-Est3-PB | 543 | CG1257-PB | 1..543 | 1..543 | 2917 | 100 | Plus |
| alpha-Est3-PA | 543 | CG1257-PA | 1..543 | 1..543 | 2917 | 100 | Plus |
| alpha-Est5-PA | 542 | CG1089-PA | 7..535 | 1..538 | 1277 | 46.2 | Plus |
| alpha-Est5-PB | 543 | CG1089-PB | 8..536 | 1..538 | 1277 | 46.2 | Plus |
