Clone Sequence Records
BO10280.5prime Sequence
485 bp (484 high quality bases) assembled on 2006-04-19
> BO10280.5prime
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGGCAAGCTTTCTAGACC
BO10280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PA | 456 | CG5447-RA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:38:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..584 | 15..469 | 2275 | 100 | Plus |
CG5447-RA | 1392 | CG5447-RA | 130..584 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:38:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 15..178 | 820 | 100 | Plus |
3R | 32079331 | 3R | 26453088..26453241 | 178..331 | 770 | 100 | Plus |
3R | 32079331 | 3R | 26453567..26453706 | 330..469 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 10:38:06 has no hits.
BO10280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:11 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:28 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:21 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 15..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:29 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 15..477 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:29 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26452859..26453022 | 15..178 | 100 | -> | Plus |
3R | 26453089..26453241 | 179..331 | 100 | -> | Plus |
3R | 26453569..26453712 | 332..477 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:21 Download gff for
BO10280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22278581..22278744 | 15..178 | 100 | -> | Plus |
arm_3R | 22278811..22278963 | 179..331 | 100 | -> | Plus |
arm_3R | 22279291..22279434 | 332..477 | 97 | | Plus |
BO10280.3prime Sequence
485 bp (484 high quality bases) assembled on 2006-04-19
> BO10280.3prime
ATGGTCTAGAAAGCTTGCCGTTCGCCCCGGACGATCGAATATTGTAATCT
CTATGACGCGAAGTCCCCGATAAGTGGGATCGATCAGCTGCAGTCCCTTG
GTGTTGTAAATGCGTTCATTTTGGGAAGCCACAAATTTGGATATCTTGCG
AAGGGTCTTTTCATAGTGCGTTTCGGAGCACATATAGATCAAGTAGGCCG
TGATGCAGCCAATGCAGCCCTCGCAATAGGTGCCGCAGGATCCCTCCTCC
GCCTCGGCGTAGAACTCGTTTAGCCTATTGATGGTGGCCTCGAAGACGTG
TCTTTCAATCATGCCCTCCAGCTCAGCGGGCAGCCGTGTATGGAACTTGA
CGGAGGTGCCCTCGCTGTAATCGCGCTGGATGAAGACCTTGCTGAAGACC
ACGCCCCCTCCGGTCGCCTGGAGCGCTGTGGGATTACCGCCCGCTGGAGT
AGTGCCACCGCCTTGGGACATGTCGACTGATAACT
BO10280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PA | 456 | CG5447-RA | 1..453 | 471..19 | 2265 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..584 | 473..19 | 2275 | 100 | Minus |
CG5447-RA | 1392 | CG5447-RA | 130..584 | 473..19 | 2275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 473..310 | 820 | 100 | Minus |
3R | 32079331 | 3R | 26453088..26453241 | 310..157 | 770 | 100 | Minus |
3R | 32079331 | 3R | 26453567..26453706 | 158..19 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:02:24 has no hits.
BO10280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:10 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:26 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-PA | 1..456 | 16..471 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:17 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 11..473 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:59 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 130..590 | 11..473 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:59 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26452859..26453022 | 310..473 | 100 | -> | Minus |
3R | 26453089..26453241 | 157..309 | 100 | -> | Minus |
3R | 26453569..26453712 | 11..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:17 Download gff for
BO10280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22278581..22278744 | 310..473 | 100 | -> | Minus |
arm_3R | 22278811..22278963 | 157..309 | 100 | -> | Minus |
arm_3R | 22279291..22279434 | 11..156 | 97 | | Minus |
BO10280.complete Sequence
487 bp (487 high quality bases) assembled on 2006-03-25
GenBank Submission: FJ631697
> BO10280.complete
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGGCAAGCTTTCTAGACCAT
BO10280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 495 | CG5447-PB | 1..453 | 17..469 | 2265 | 100 | Plus |
CG5447-RA | 456 | CG5447-PA | 1..453 | 17..469 | 2265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-RB | 1392 | CG5447-RB | 130..584 | 15..469 | 2275 | 100 | Plus |
CG5447-RA | 1392 | CG5447-RA | 130..584 | 15..469 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26452859..26453022 | 15..178 | 820 | 100 | Plus |
3R | 32079331 | 3R | 26453088..26453241 | 178..331 | 770 | 100 | Plus |
3R | 32079331 | 3R | 26453567..26453706 | 330..469 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:58:22 has no hits.
BO10280.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:10 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 1..456 | 17..472 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:39 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 131..591 | 15..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:34 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 132..584 | 17..471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:10 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 131..591 | 15..477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:08 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5447-RA | 132..584 | 17..471 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:08 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26453569..26453706 | 332..471 | 98 | | Plus |
3R | 26452861..26453022 | 17..178 | 100 | -> | Plus |
3R | 26453089..26453241 | 179..331 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:34 Download gff for
BO10280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22279291..22279428 | 332..471 | 98 | | Plus |
arm_3R | 22278583..22278744 | 17..178 | 100 | -> | Plus |
arm_3R | 22278811..22278963 | 179..331 | 100 | -> | Plus |
BO10280.pep Sequence
Translation from 16 to 487
> BO10280.pep
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
TASFLDH
BO10280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5447-PB | 164 | CG5447-PB | 1..157 | 1..157 | 802 | 97.5 | Plus |
CG5447-PA | 151 | CG5447-PA | 1..151 | 1..151 | 797 | 100 | Plus |