Clone BO10280 Report

Search the DGRC for BO10280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:102
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG5447-RA
Protein status:BO10280.pep: validated full length
Sequenced Size:487

Clone Sequence Records

BO10280.5prime Sequence

485 bp (484 high quality bases) assembled on 2006-04-19

> BO10280.5prime
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGGCAAGCTTTCTAGACC

BO10280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 456 CG5447-RA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..584 15..469 2275 100 Plus
CG5447-RA 1392 CG5447-RA 130..584 15..469 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 15..178 820 100 Plus
3R 32079331 3R 26453088..26453241 178..331 770 100 Plus
3R 32079331 3R 26453567..26453706 330..469 700 100 Plus
Blast to na_te.dros performed on 2015-02-04 10:38:06 has no hits.

BO10280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:11 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:28 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:27:21 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 15..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:38:29 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 15..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:38:29 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26452859..26453022 15..178 100 -> Plus
3R 26453089..26453241 179..331 100 -> Plus
3R 26453569..26453712 332..477 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:27:21 Download gff for BO10280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278581..22278744 15..178 100 -> Plus
arm_3R 22278811..22278963 179..331 100 -> Plus
arm_3R 22279291..22279434 332..477 97   Plus

BO10280.3prime Sequence

485 bp (484 high quality bases) assembled on 2006-04-19

> BO10280.3prime
ATGGTCTAGAAAGCTTGCCGTTCGCCCCGGACGATCGAATATTGTAATCT
CTATGACGCGAAGTCCCCGATAAGTGGGATCGATCAGCTGCAGTCCCTTG
GTGTTGTAAATGCGTTCATTTTGGGAAGCCACAAATTTGGATATCTTGCG
AAGGGTCTTTTCATAGTGCGTTTCGGAGCACATATAGATCAAGTAGGCCG
TGATGCAGCCAATGCAGCCCTCGCAATAGGTGCCGCAGGATCCCTCCTCC
GCCTCGGCGTAGAACTCGTTTAGCCTATTGATGGTGGCCTCGAAGACGTG
TCTTTCAATCATGCCCTCCAGCTCAGCGGGCAGCCGTGTATGGAACTTGA
CGGAGGTGCCCTCGCTGTAATCGCGCTGGATGAAGACCTTGCTGAAGACC
ACGCCCCCTCCGGTCGCCTGGAGCGCTGTGGGATTACCGCCCGCTGGAGT
AGTGCCACCGCCTTGGGACATGTCGACTGATAACT

BO10280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 14:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PA 456 CG5447-RA 1..453 471..19 2265 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..584 473..19 2275 100 Minus
CG5447-RA 1392 CG5447-RA 130..584 473..19 2275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 473..310 820 100 Minus
3R 32079331 3R 26453088..26453241 310..157 770 100 Minus
3R 32079331 3R 26453567..26453706 158..19 700 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:02:24 has no hits.

BO10280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:35:10 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:47:26 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-PA 1..456 16..471 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 10:19:17 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 11..473 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:00:59 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 130..590 11..473 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:00:59 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26452859..26453022 310..473 100 -> Minus
3R 26453089..26453241 157..309 100 -> Minus
3R 26453569..26453712 11..156 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 10:19:17 Download gff for BO10280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22278581..22278744 310..473 100 -> Minus
arm_3R 22278811..22278963 157..309 100 -> Minus
arm_3R 22279291..22279434 11..156 97   Minus

BO10280.complete Sequence

487 bp (487 high quality bases) assembled on 2006-03-25

GenBank Submission: FJ631697

> BO10280.complete
GAAGTTATCAGTCGACATGTCCCAAGGCGGTGGCACTACTCCAGCGGGCG
GTAATCCCACAGCGCTCCAGGCGACCGGAGGGGGCGTGGTCTTCAGCAAG
GTCTTCATCCAGCGCGATTACAGCGAGGGCACCTCCGTCAAGTTCCATAC
ACGGCTGCCCGCTGAGCTGGAGGGCATGATTGAAAGACACGTCTTCGAGG
CCACCATCAATAGGCTAAACGAGTTCTACGCCGAGGCGGAGGAGGGATCC
TGCGGCACCTATTGCGAGGGCTGCATTGGCTGCATCACGGCCTACTTGAT
CTATATGTGCTCCGAAACGCACTATGAAAAGACCCTTCGCAAGATATCCA
AATTTGTGGCTTCCCAAAATGAACGCATTTACAACACCAAGGGACTGCAG
CTGATCGATCCCACTTATCGGGGACTTCGCGTCATAGAGATTACAATATT
CGATCGTCCGGGGCGAACGGCAAGCTTTCTAGACCAT

BO10280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:58:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 495 CG5447-PB 1..453 17..469 2265 100 Plus
CG5447-RA 456 CG5447-PA 1..453 17..469 2265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-RB 1392 CG5447-RB 130..584 15..469 2275 100 Plus
CG5447-RA 1392 CG5447-RA 130..584 15..469 2275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26452859..26453022 15..178 820 100 Plus
3R 32079331 3R 26453088..26453241 178..331 770 100 Plus
3R 32079331 3R 26453567..26453706 330..469 700 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:58:22 has no hits.

BO10280.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:10 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 1..456 17..472 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:28:39 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 131..591 15..477 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:34 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 132..584 17..471 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:10 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 131..591 15..477 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:08 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
CG5447-RA 132..584 17..471 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:08 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26453569..26453706 332..471 98   Plus
3R 26452861..26453022 17..178 100 -> Plus
3R 26453089..26453241 179..331 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:34 Download gff for BO10280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22279291..22279428 332..471 98   Plus
arm_3R 22278583..22278744 17..178 100 -> Plus
arm_3R 22278811..22278963 179..331 100 -> Plus

BO10280.pep Sequence

Translation from 16 to 487

> BO10280.pep
MSQGGGTTPAGGNPTALQATGGGVVFSKVFIQRDYSEGTSVKFHTRLPAE
LEGMIERHVFEATINRLNEFYAEAEEGSCGTYCEGCIGCITAYLIYMCSE
THYEKTLRKISKFVASQNERIYNTKGLQLIDPTYRGLRVIEITIFDRPGR
TASFLDH

BO10280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5447-PB 164 CG5447-PB 1..157 1..157 802 97.5 Plus
CG5447-PA 151 CG5447-PA 1..151 1..151 797 100 Plus